2NUMA

Soluble domain of rieske iron-sulfur protein
Total Genus 35
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
35
sequence length
141
structure length
141
Chain Sequence
LASIFVDVSSVEPGVQLTVKFLGKPIFIRRRTEADIELGRSVQLGQLVDTNARNANIDAGAEATDQNRTLDEAGEWLVMWGVCTHLGCVPIGGVSGDFGGWFCPCHGSHFDSAGRIRKGPAPENLPIPLAKFIDETTIQLG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords Ubiquinol-cytochrome c reductase iron-sulfur subunit
publication title Atomic resolution structures of rieske iron-sulfur protein: role of hydrogen bonds in tuning the redox potential of iron-sulfur clusters.
pubmed doi rcsb
source organism Rhodobacter sphaeroides
total genus 35
structure length 141
sequence length 141
ec nomenclature ec 7.1.1.8: Quinol--cytochrome-c reductase.
pdb deposition date 2006-11-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00355 Rieske Rieske [2Fe-2S] domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 2numA00
2QPZA 2YIUC 2HMMA 3L75E 3BCCE 4HM0A 1SQQE 4NBED 3GTSA 2QJYC 5KLVE 2DE6D 2NUMA 2E4PA 3N0QA 4HM6A 4QUQA 1UUVA 1NTME 4NBBD 2HMLA 3CX5E 2JO6A 2XSOA 1L0LE 1UUWA 1PP9E 1ULIA 3FOUA 3EQQA 3VMID 2GBXA 3GKEA 1P84E 3H1JE 4NB8D 2XSHA 1EZVE 2BCCE 4QUPA 4PD4E 3C0DA 3H1HE 2I7FA 4NBDD 4QCKA 2DE5D 4HKVA 2HMOA 1NTKE 4QURA 1NDOA 2ZYLA 3GL0A 4PV1D 4H0LD 3L70E 5AEUA 2NUKA 4QDFA 3GZYA 1BE3E 2XR8A 3L71E 4HM3A 4AIVA 2NWFA 4EMJB 5BOKA 1O7NA 3VMHD 2IBZE 2E76D 1WQLA 1SQXE 2E75D 4HM1A 4NBFD 3VMGD 1NYKA 2DE7D 3D89A 4H44D 3VCAA 4H13D 1KYOE 2ZT9D 4HJLA 2B24A 3H1LE 3TGUE 1RIEA 4NBHD 2JZAA 1G8KB 4HM2A 1RFSA 4AAYB 2BMQA 4HM7A 2QJPC 5KLIC 2A06E 2YFLA 5AEWA 2B1XA 1BCCE 2YFJA 1ULJA 3GL2A 4NBCD 3VCPA 3AZCA 1O7PA 3GTEA 1EG9A 5KKZC 2XRXA 1Q90C 3GB4A 2E4QA 3CWBE 2GBWA 2NVEA 2FYUE 2QJKC 1O7MA 3H1IE 3CXHE 1PPJE 2Q3WA 1NU1E 2HMNA 3EN1A 1O7HA 3L74E 4HM5A 1FQTA 1SQPE 4U3FE 2YVJB 4P1BH 3L72E 1G8JB 2BMOA 2E74D 2NVGA 2NVFA 3L73E 4HM8A 4NBAD 2FYNC 1JM1A 1ZRTE 4NBGD 4QDDA 1O7WA 2CKFA 3H1KE 4NB9D 1VM9A 1VF5D 1NTZE 4P1CH 1KB9E 1SQVE 2BMRA 1VCKA 2HMKA 3GCEA 5CXMA 1SJGA 3DQYA 2HMJA 2YFIA 3GOBA 1SQBE 2D2CD 1L0NE 4QDCA 1O7GA 3GZXA 4QDFB 4OGQD 5HL4A 4HM4A
chains in the Genus database with same CATH superfamily
2QPZA 2YIUC 2HMMA 3L75E 3BCCE 4HM0A 1SQQE 4NBED 3GTSA 2QJYC 5KLVE 2DE6D 2NUMA 2E4PA 3N0QA 4HM6A 4QUQA 1UUVA 1NTME 4NBBD 2HMLA 3CX5E 2JO6A 2XSOA 1L0LE 1UUWA 1PP9E 1ULIA 3FOUA 3EQQA 3VMID 2GBXA 3GKEA 1P84E 3H1JE 4NB8D 2XSHA 1EZVE 2BCCE 4QUPA 4PD4E 3C0DA 3H1HE 2I7FA 4NBDD 4QCKA 2DE5D 4HKVA 2HMOA 1NTKE 4QURA 1NDOA 2ZYLA 3GL0A 4PV1D 4H0LD 3L70E 5AEUA 2NUKA 4QDFA 3GZYA 1BE3E 2XR8A 3L71E 4HM3A 4AIVA 2NWFA 4EMJB 5BOKA 1O7NA 3VMHD 2IBZE 2E76D 1WQLA 1SQXE 2E75D 4HM1A 4NBFD 3VMGD 1NYKA 2DE7D 3D89A 4H44D 3VCAA 4H13D 1KYOE 2ZT9D 4HJLA 2B24A 3H1LE 3TGUE 1RIEA 4NBHD 2JZAA 1G8KB 4HM2A 1RFSA 4AAYB 2BMQA 4HM7A 2QJPC 5KLIC 2A06E 2YFLA 5AEWA 2B1XA 1BCCE 2YFJA 1ULJA 3GL2A 4NBCD 3VCPA 3AZCA 1O7PA 3GTEA 1EG9A 5KKZC 2XRXA 1Q90C 3GB4A 2E4QA 3CWBE 2GBWA 2NVEA 2FYUE 2QJKC 1O7MA 3H1IE 3CXHE 1PPJE 2Q3WA 1NU1E 2HMNA 3EN1A 1O7HA 3L74E 4HM5A 1FQTA 1SQPE 4U3FE 2YVJB 4P1BH 3L72E 1G8JB 2BMOA 2E74D 2NVGA 2NVFA 3L73E 4HM8A 4NBAD 2FYNC 1JM1A 1ZRTE 4NBGD 4QDDA 1O7WA 2CKFA 3H1KE 4NB9D 1VM9A 1VF5D 1NTZE 4P1CH 1KB9E 1SQVE 2BMRA 1VCKA 2HMKA 3GCEA 5CXMA 1SJGA 3DQYA 2HMJA 2YFIA 3GOBA 1SQBE 2D2CD 1L0NE 4QDCA 1O7GA 3GZXA 4QDFB 4OGQD 5HL4A 4HM4A
chains in the Genus database with same CATH topology
2QPZA 2YIUC 2HMMA 3L75E 3BCCE 4HM0A 1SQQE 4NBED 3GTSA 2QJYC 5KLVE 2DE6D 2NUMA 2E4PA 3N0QA 4HM6A 4QUQA 1UUVA 1NTME 4NBBD 2HMLA 3CX5E 2JO6A 2XSOA 1L0LE 1UUWA 1PP9E 1ULIA 3FOUA 3EQQA 3VMID 2GBXA 3GKEA 1P84E 3H1JE 4NB8D 2XSHA 1EZVE 2BCCE 4QUPA 4PD4E 3C0DA 3H1HE 2I7FA 4NBDD 4QCKA 2DE5D 4HKVA 2HMOA 1NTKE 4QURA 1NDOA 2ZYLA 3GL0A 4PV1D 4H0LD 3L70E 5AEUA 2NUKA 4QDFA 3GZYA 1BE3E 2XR8A 3L71E 4HM3A 4AIVA 2NWFA 4EMJB 5BOKA 1O7NA 3VMHD 2IBZE 2E76D 1WQLA 1SQXE 2E75D 4HM1A 4NBFD 3VMGD 1NYKA 2DE7D 3D89A 4H44D 3VCAA 4H13D 1KYOE 2ZT9D 4HJLA 2B24A 3H1LE 3TGUE 1RIEA 4NBHD 2JZAA 1G8KB 4HM2A 1RFSA 4AAYB 2BMQA 4HM7A 2QJPC 5KLIC 2A06E 2YFLA 5AEWA 2B1XA 1BCCE 2YFJA 1ULJA 3GL2A 4NBCD 3VCPA 3AZCA 1O7PA 3GTEA 1EG9A 5KKZC 2XRXA 1Q90C 3GB4A 2E4QA 3CWBE 2GBWA 2NVEA 2FYUE 2QJKC 1O7MA 3H1IE 3CXHE 1PPJE 2Q3WA 1NU1E 2HMNA 3EN1A 1O7HA 3L74E 4HM5A 1FQTA 1SQPE 4U3FE 2YVJB 4P1BH 3L72E 1G8JB 2BMOA 2E74D 2NVGA 2NVFA 3L73E 4HM8A 4NBAD 2FYNC 1JM1A 1ZRTE 4NBGD 4QDDA 1O7WA 2CKFA 3H1KE 4NB9D 1VM9A 1VF5D 1NTZE 4P1CH 1KB9E 1SQVE 2BMRA 1VCKA 2HMKA 3GCEA 5CXMA 1SJGA 3DQYA 2HMJA 2YFIA 3GOBA 1SQBE 2D2CD 1L0NE 4QDCA 1O7GA 3GZXA 4QDFB 4OGQD 5HL4A 4HM4A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2QPZ A;  2YIU C;  2HMM A;  3L75 E;  3BCC E;  4HM0 A;  1SQQ E;  4NBE D;  3GTS A;  2QJY C;  5KLV E;  2DE6 D;  2NUM A;  2E4P A;  3N0Q A;  4HM6 A;  4QUQ A;  1UUV A;  1NTM E;  4NBB D;  2HML A;  3CX5 E;  2JO6 A;  2XSO A;  1L0L E;  1UUW A;  1PP9 E;  1ULI A;  3FOU A;  3EQQ A;  3VMI D;  2GBX A;  3GKE A;  1P84 E;  3H1J E;  4NB8 D;  2XSH A;  1EZV E;  2BCC E;  4QUP A;  4PD4 E;  3C0D A;  3H1H E;  2I7F A;  4NBD D;  4QCK A;  2DE5 D;  4HKV A;  2HMO A;  1NTK E;  4QUR A;  1NDO A;  2ZYL A;  3GL0 A;  4PV1 D;  4H0L D;  3L70 E;  5AEU A;  2NUK A;  4QDF A;  3GZY A;  1BE3 E;  2XR8 A;  3L71 E;  4HM3 A;  4AIV A;  2NWF A;  4EMJ B;  5BOK A;  1O7N A;  3VMH D;  2IBZ E;  2E76 D;  1WQL A;  1SQX E;  2E75 D;  4HM1 A;  4NBF D;  3VMG D;  1NYK A;  2DE7 D;  3D89 A;  4H44 D;  3VCA A;  4H13 D;  1KYO E;  2ZT9 D;  4HJL A;  2B24 A;  3H1L E;  3TGU E;  1RIE A;  4NBH D;  2JZA A;  1G8K B;  4HM2 A;  1RFS A;  4AAY B;  2BMQ A;  4HM7 A;  2QJP C;  5KLI C;  2A06 E;  2YFL A;  5AEW A;  2B1X A;  1BCC E;  2YFJ A;  1ULJ A;  3GL2 A;  4NBC D;  3VCP A;  3AZC A;  1O7P A;  3GTE A;  1EG9 A;  5KKZ C;  2XRX A;  1Q90 C;  3GB4 A;  2E4Q A;  3CWB E;  2GBW A;  2NVE A;  2FYU E;  2QJK C;  1O7M A;  3H1I E;  3CXH E;  1PPJ E;  2Q3W A;  1NU1 E;  2HMN A;  3EN1 A;  1O7H A;  3L74 E;  4HM5 A;  1FQT A;  1SQP E;  4U3F E;  2YVJ B;  4P1B H;  3L72 E;  1G8J B;  2BMO A;  2E74 D;  2NVG A;  2NVF A;  3L73 E;  4HM8 A;  4NBA D;  2FYN C;  1JM1 A;  1ZRT E;  4NBG D;  4QDD A;  1O7W A;  2CKF A;  3H1K E;  4NB9 D;  1VM9 A;  1VF5 D;  1NTZ E;  4P1C H;  1KB9 E;  1SQV E;  2BMR A;  1VCK A;  2HMK A;  3GCE A;  5CXM A;  1SJG A;  3DQY A;  2HMJ A;  2YFI A;  3GOB A;  1SQB E;  2D2C D;  1L0N E;  4QDC A;  1O7G A;  3GZX A;  4QDF B;  4OGQ D;  5HL4 A;  4HM4 A; 
#chains in the Genus database with same CATH topology
 2QPZ A;  2YIU C;  2HMM A;  3L75 E;  3BCC E;  4HM0 A;  1SQQ E;  4NBE D;  3GTS A;  2QJY C;  5KLV E;  2DE6 D;  2NUM A;  2E4P A;  3N0Q A;  4HM6 A;  4QUQ A;  1UUV A;  1NTM E;  4NBB D;  2HML A;  3CX5 E;  2JO6 A;  2XSO A;  1L0L E;  1UUW A;  1PP9 E;  1ULI A;  3FOU A;  3EQQ A;  3VMI D;  2GBX A;  3GKE A;  1P84 E;  3H1J E;  4NB8 D;  2XSH A;  1EZV E;  2BCC E;  4QUP A;  4PD4 E;  3C0D A;  3H1H E;  2I7F A;  4NBD D;  4QCK A;  2DE5 D;  4HKV A;  2HMO A;  1NTK E;  4QUR A;  1NDO A;  2ZYL A;  3GL0 A;  4PV1 D;  4H0L D;  3L70 E;  5AEU A;  2NUK A;  4QDF A;  3GZY A;  1BE3 E;  2XR8 A;  3L71 E;  4HM3 A;  4AIV A;  2NWF A;  4EMJ B;  5BOK A;  1O7N A;  3VMH D;  2IBZ E;  2E76 D;  1WQL A;  1SQX E;  2E75 D;  4HM1 A;  4NBF D;  3VMG D;  1NYK A;  2DE7 D;  3D89 A;  4H44 D;  3VCA A;  4H13 D;  1KYO E;  2ZT9 D;  4HJL A;  2B24 A;  3H1L E;  3TGU E;  1RIE A;  4NBH D;  2JZA A;  1G8K B;  4HM2 A;  1RFS A;  4AAY B;  2BMQ A;  4HM7 A;  2QJP C;  5KLI C;  2A06 E;  2YFL A;  5AEW A;  2B1X A;  1BCC E;  2YFJ A;  1ULJ A;  3GL2 A;  4NBC D;  3VCP A;  3AZC A;  1O7P A;  3GTE A;  1EG9 A;  5KKZ C;  2XRX A;  1Q90 C;  3GB4 A;  2E4Q A;  3CWB E;  2GBW A;  2NVE A;  2FYU E;  2QJK C;  1O7M A;  3H1I E;  3CXH E;  1PPJ E;  2Q3W A;  1NU1 E;  2HMN A;  3EN1 A;  1O7H A;  3L74 E;  4HM5 A;  1FQT A;  1SQP E;  4U3F E;  2YVJ B;  4P1B H;  3L72 E;  1G8J B;  2BMO A;  2E74 D;  2NVG A;  2NVF A;  3L73 E;  4HM8 A;  4NBA D;  2FYN C;  1JM1 A;  1ZRT E;  4NBG D;  4QDD A;  1O7W A;  2CKF A;  3H1K E;  4NB9 D;  1VM9 A;  1VF5 D;  1NTZ E;  4P1C H;  1KB9 E;  1SQV E;  2BMR A;  1VCK A;  2HMK A;  3GCE A;  5CXM A;  1SJG A;  3DQY A;  2HMJ A;  2YFI A;  3GOB A;  1SQB E;  2D2C D;  1L0N E;  4QDC A;  1O7G A;  3GZX A;  4QDF B;  4OGQ D;  5HL4 A;  4HM4 A; 
#chains in the Genus database with same CATH homology
 2QPZ A;  2YIU C;  2HMM A;  3L75 E;  3BCC E;  4HM0 A;  1SQQ E;  4NBE D;  3GTS A;  2QJY C;  5KLV E;  2DE6 D;  2NUM A;  2E4P A;  3N0Q A;  4HM6 A;  4QUQ A;  1UUV A;  1NTM E;  4NBB D;  2HML A;  3CX5 E;  2JO6 A;  2XSO A;  1L0L E;  1UUW A;  1PP9 E;  1ULI A;  3FOU A;  3EQQ A;  3VMI D;  2GBX A;  3GKE A;  1P84 E;  3H1J E;  4NB8 D;  2XSH A;  1EZV E;  2BCC E;  4QUP A;  4PD4 E;  3C0D A;  3H1H E;  2I7F A;  4NBD D;  4QCK A;  2DE5 D;  4HKV A;  2HMO A;  1NTK E;  4QUR A;  1NDO A;  2ZYL A;  3GL0 A;  4PV1 D;  4H0L D;  3L70 E;  5AEU A;  2NUK A;  4QDF A;  3GZY A;  1BE3 E;  2XR8 A;  3L71 E;  4HM3 A;  4AIV A;  2NWF A;  4EMJ B;  5BOK A;  1O7N A;  3VMH D;  2IBZ E;  2E76 D;  1WQL A;  1SQX E;  2E75 D;  4HM1 A;  4NBF D;  3VMG D;  1NYK A;  2DE7 D;  3D89 A;  4H44 D;  3VCA A;  4H13 D;  1KYO E;  2ZT9 D;  4HJL A;  2B24 A;  3H1L E;  3TGU E;  1RIE A;  4NBH D;  2JZA A;  1G8K B;  4HM2 A;  1RFS A;  4AAY B;  2BMQ A;  4HM7 A;  2QJP C;  5KLI C;  2A06 E;  2YFL A;  5AEW A;  2B1X A;  1BCC E;  2YFJ A;  1ULJ A;  3GL2 A;  4NBC D;  3VCP A;  3AZC A;  1O7P A;  3GTE A;  1EG9 A;  5KKZ C;  2XRX A;  1Q90 C;  3GB4 A;  2E4Q A;  3CWB E;  2GBW A;  2NVE A;  2FYU E;  2QJK C;  1O7M A;  3H1I E;  3CXH E;  1PPJ E;  2Q3W A;  1NU1 E;  2HMN A;  3EN1 A;  1O7H A;  3L74 E;  4HM5 A;  1FQT A;  1SQP E;  4U3F E;  2YVJ B;  4P1B H;  3L72 E;  1G8J B;  2BMO A;  2E74 D;  2NVG A;  2NVF A;  3L73 E;  4HM8 A;  4NBA D;  2FYN C;  1JM1 A;  1ZRT E;  4NBG D;  4QDD A;  1O7W A;  2CKF A;  3H1K E;  4NB9 D;  1VM9 A;  1VF5 D;  1NTZ E;  4P1C H;  1KB9 E;  1SQV E;  2BMR A;  1VCK A;  2HMK A;  3GCE A;  5CXM A;  1SJG A;  3DQY A;  2HMJ A;  2YFI A;  3GOB A;  1SQB E;  2D2C D;  1L0N E;  4QDC A;  1O7G A;  3GZX A;  4QDF B;  4OGQ D;  5HL4 A;  4HM4 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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