2NWXA

Crystal structure of gltph in complex with l-aspartate and sodium ions
Total Genus 147
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
147
Knots found
sequence length
405
structure length
400
Chain Sequence
VLQKILIGLILGAIVGLILGHYGYAHAVHTYVKPFGDLFVRLLKMLVMPIVFASLVVGAASISPARLGRVGVKIVVYYLLTSAFAVTLGIIMARLFNPGAGIHLAVGGQQFPPLVHILLDIVPTNPFGALANGQVLPTIFFAIILGIAITYLMNSENEKVRKSAETLLDAINGLAEAMYKIVNGVMQYAPIGVFALIAYVMAEQGVHVVGELAKVTAAVYVGLTLQILLVYFVLLKIYGIDPISFIKHAKDAMLTAFVTRSSSGTLPVTMRVAKEMGISEGIYSFTLPLGATINMDGTALYQGVCTFFIANALGSHLTVGQQLTIVLTAVLASIGTAGVPGAGAIMLAMVLHSVGLPLTDPNVAAAYAMILGIDAILDMGRTMVNVTGDLTGTAIVAKTE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transport protein
molecule keywords 425aa long hypothetical proton glutamate symport protein
publication title Coupling substrate and ion binding to extracellular gate of a sodium-dependent aspartate transporter.
pubmed doi rcsb
source organism Pyrococcus horikoshii
total genus 147
structure length 400
sequence length 405
chains with identical sequence B, C
other databases KnotProt 2.0: S +31 +31
ec nomenclature
pdb deposition date 2006-11-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00375 SDF Sodium:dicarboxylate symporter family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.3860.10 Mainly Alpha Orthogonal Bundle Proton glutamate symport protein Sodium:dicarboxylate symporter 2nwxA00
5E9SA 3KBCA 2NWWA 4P19A 4OYFA 2NWXA 5CFYA 5DWYA 1XFHA 4P3JA 3V8FA 4OYEA 4P1AA 2NWLA 4KY0A
chains in the Genus database with same CATH superfamily
5E9SA 3KBCA 2NWWA 4P19A 4OYFA 2NWXA 5CFYA 5DWYA 1XFHA 4P3JA 3V8FA 4OYEA 4P1AA 2NWLA 4KY0A
chains in the Genus database with same CATH topology
5E9SA 3KBCA 2NWWA 4P19A 4OYFA 2NWXA 5CFYA 5DWYA 1XFHA 4P3JA 3V8FA 4OYEA 4P1AA 2NWLA 4KY0A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5E9S A;  3KBC A;  2NWW A;  4P19 A;  4OYF A;  2NWX A;  5CFY A;  5DWY A;  1XFH A;  4P3J A;  3V8F A;  4OYE A;  4P1A A;  2NWL A;  4KY0 A; 
#chains in the Genus database with same CATH topology
 5E9S A;  3KBC A;  2NWW A;  4P19 A;  4OYF A;  2NWX A;  5CFY A;  5DWY A;  1XFH A;  4P3J A;  3V8F A;  4OYE A;  4P1A A;  2NWL A;  4KY0 A; 
#chains in the Genus database with same CATH homology
 5E9S A;  3KBC A;  2NWW A;  4P19 A;  4OYF A;  2NWX A;  5CFY A;  5DWY A;  1XFH A;  4P3J A;  3V8F A;  4OYE A;  4P1A A;  2NWL A;  4KY0 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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