The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
90
|
sequence length |
368
|
structure length |
300
|
Chain Sequence |
DPMKIADLMTLLDHHVPFSTAESWDNVGLLIGDEDVEVTGVLTALDCTLEVVNEAIEKGYNTIISHHPLIFKGVTSLKANGYGLIIRKLIQHDINLIAMHTNLDVNPYGVNMMLAKVMGLKNISIINNQQDVYYKVQEFMIDAYQKSRAEQLIKQTPVFDFIEIKQTSLYGLGVMAEVDNQMTLEDFAADIKSKLNIPSVRFVGESNQKIKRIAIIGGSGIGYEYQAVQQGADVFVTGDIKHHDALDAKIHGVNLIDINHYSEYVMKEGLKTLLMNWFNIEKINIDVEASTINTDPFQYI
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Structure of a conserved hypothetical protein SA1388 from S. aureus reveals a capped hexameric toroid with two PII domain lids and a dinuclear metal center.
pubmed doi rcsb |
| molecule keywords |
UPF0135 protein SA1388
|
| molecule tags |
Unknown function
|
| source organism |
Staphylococcus aureus subsp. aureus
|
| total genus |
90
|
| structure length |
300
|
| sequence length |
368
|
| chains with identical sequence |
B
|
| ec nomenclature | |
| pdb deposition date | 2006-11-20 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF01784 | NIF3 | NIF3 (NGG1p interacting factor 3) |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Single Sheet | Rubrerythrin, domain 2 | Rubrerythrin, domain 2 |
#chains in the Genus database with same CATH superfamily 2NYD A; 3LNL A; #chains in the Genus database with same CATH topology 2NVT L; 2GMG A; 1DVB A; 2L0Z A; 3GTL L; 1SMW A; 3I4M L; 2PYA A; 5GAH c; 5GAE c; 1TWH L; 3LPE B; 1BRF A; 2XJT A; 3H0G L; 3KYU A; 2WAQ P; 1LKM A; 3KYX A; 1T9O A; 1BQ9 A; 2C6B A; 3H9B A; 4G6B A; 3PO2 L; 4Y52 L; 5IYD L; 1SFO L; 5K2M E; 5C4J L; 2V0E A; 2C6A A; 2Z3Q B; 3ZG6 A; 2AUS B; 1Y1W L; 5M3F L; 5AN9 H; 5IP9 L; 2QL0 A; 1YK4 A; 3CQZ L; 5H1S c; 1F4L A; 3S17 L; 2KN9 A; 1PFW A; 1TWF L; 3I4N L; 3HOZ L; 2CKA A; 1WJV A; 3GTP L; 3LNL A; 1IRO A; 4A3E L; 1S2Z A; 5FLM L; 3P8B A; 3S2D L; 4A3G L; 2MS3 A; 4AHZ A; 5JVH 1; 4BBR L; 3S1Q L; 4GS7 D; 4A3C L; 1B71 A; 5MFP A; 3K35 A; 4AI0 A; 3B08 B; 4TPU A; 4TVM A; 5JVG 1; 5EIN C; 1RDV A; 2V0F A; 3J7Z 1; 5GAG c; 2NYD A; 1R0J A; 1SMU A; 5M5X L; 3WWN B; 2CR8 A; 1P7P A; 5IY0 A; 1CAD A; 3HAX C; 1I3Q L; 3IU3 I; 3GTQ L; 2E2H L; 4BXX L; 3JR7 A; 2VL6 A; 7RXN A; 1PZX A; 2A68 D; 4POG A; 1PFV A; 5M3M L; 1R9T L; 3HJY B; 1BQ8 A; 4AR3 A; 3LWQ B; 1BFY A; 3HOY L; 3RZT A; 3LWP B; 1RWD A; 1T9Q A; 3S2H L; 4A3M L; 1NXE A; 4U67 1; 1RDG A; 1YUZ A; 2VUM L; 1RYT A; 2NVX L; 2XJQ A; 3H3V M; 2M6P A; 1QYB A; 3HOW L; 3NFP I; 3HOV L; 4XXB B; 2WB1 P; 3PIP 1; 4LHN A; 1R0H A; 3S16 L; 2E2J L; 1B2O A; 4C3I L; 4JAG A; 5C4X L; 1T9P A; 1LKP A; 2PMZ P; 3H9C A; 1OWC A; 4AI1 A; 2B63 L; 3K7A L; 3HKZ P; 1RYQ A; 3PWF A; 1NXG A; 1S24 A; 1R0F A; 1YV1 A; 1R0G A; 2ERJ A; 5MLC 3; 3MQK B; 4JAE A; 2LCQ A; 1VZG A; 3RZD L; 1QQT A; 2Y0S P; 2JI3 A; 3H99 A; 3FDJ A; 4AHW A; 3J7Y 1; 3GTJ L; 3HOX L; 4AI2 A; 3RYG A; 3GTK L; 2JA6 L; 2APO B; 3M3Y L; 3H97 A; 3FKI L; 1B13 A; 1LTL A; 2M6O A; 2XJS A; 2J9U B; 2NVQ L; 4V19 6; 3S14 L; 3LWR B; 1IRN A; 4AYB P; 2JA5 L; 2R92 L; 1IU5 A; 2PVE A; 3P2A A; 1ZRP A; 3PZA A; 1ODH A; 5M5W L; 4A3J L; 1SMM A; 3QQC E; 2EY4 E; 2A6H D; 4AI3 A; 2JI2 A; 1R0I A; 2PVX A; 2R7Z L; 4A3F L; 4YWM A; 4UY8 1; 5MGN A; 4AR6 A; 3LWV B; 3QVD A; 1DX8 A; 4AR5 A; 4A93 L; 4ME3 A; 2JA7 L; 4E6Y A; 2PSM C; 4Y7N L; 3RZO L; 3MSU A; 1VZI A; 1WCM L; 4LHL A; 2M4V A; 5IYB L; 3HOU L; 1FHH A; 3KYY A; 6RXN A; 1I50 L; 5GAD c; 4K9F A; 4AHX A; 3S15 L; 1YK5 A; 5DM6 1; 3GTM L; 3VPB E; 3A44 A; 1PFY A; 3S1R L; 5AI3 A; 1IW7 D; 2KKD A; 3S1M L; 2Z3R B; 1CAA A; 2PPT A; 1S30 A; 1TWA L; 3RZ6 A; 4YWL A; 1QCV A; 3KYW A; 4C3J L; 5MF6 A; 4POF A; 2ZIX A; 2O5J D; 3GTG L; 2R93 L; 1I6H L; 3PL5 A; 4AR4 A; 3WWL A; 4C3H L; 5IP7 L; 2K2D A; 2HR5 A; 2HVY C; 1B2J A; 3GTO L; 3LWO B; 3PKJ A; 4A3K L; 3PO3 L; 1RB9 A; 4ZN1 B; 2AYJ A; 1FHM A; 1NNQ A; 1YUX A; 5C44 L; 1H7V A; 2H12 A; 1Y1V L; 5IYC L; 2CKC A; 4QIW P; 4BY1 L; 1BE7 A; 2V3B B; 3M4O L; 4JAF A; 2JA8 L; 5C3E L; 2JI1 A; 2NVY L; 3KYV A; 1C09 A; 5FJ8 L; 4WFN 1; 5RXN A; 2A69 D; 3B0A B; 3PIO 1; 5MFZ A; 3HJW B; 4C2M 1; 2ERS A; 2A6E D; 2B5I D; 2BE5 D; 1TWC L; 4A3I L; 4BY7 L; 4JAD A; 8RXN A; 4X6A L; 1E8J A; 4XGH A; 3MPS A; 4A3B L; 4RXN A; 1PFU A; 3S1N L; 1Z92 B; 4AHY A; 4A3L L; 1LKO A; 1VCX A; 2RFK B; 2XJP A; 4ZN3 B; 1OWB A; 5M5Y L; 1VZH A; 2XJU A; 5EIO C; 5DM7 1; 4B8C D; 1K83 L; 2XJR A; 5AI2 A; 2RDV A; 4A3D L; 2YU9 L; 1JYB A; 2M4Y A; 2XJV A; 2AQC A; 3PKI A; 2E2I L; 4BBS L; 1TWG L; 2DSX A; 1IU6 A; 3SS2 A; #chains in the Genus database with same CATH homology 4AR3 A; 2GMG A; 1DVB A; 2L0Z A; 3PKJ A; 1BFY A; 3P2A A; 1SMW A; 1RB9 A; 1ZRP A; 3PZA A; 4ZN1 B; 3RZT A; 1ODH A; 1SMM A; 2PYA A; 1RWD A; 2AYJ A; 5GAH c; 5GAE c; 3QQC E; 3LPE B; 1FHM A; 1NNQ A; 1YUX A; 1T9Q A; 1H7V A; 1BRF A; 1NXE A; 2A6H D; 4AI3 A; 4U67 1; 2JI2 A; 1RDG A; 2H12 A; 2XJT A; 1YUZ A; 1R0I A; 1RYT A; 3KYU A; 2CKC A; 2XJQ A; 2M6P A; 2PVX A; 1LKM A; 1QYB A; 3KYX A; 3NFP I; 4YWM A; 2C6B A; 1T9O A; 1BQ9 A; 4XXB B; 1BE7 A; 4G6B A; 4UY8 1; 3PIP 1; 2V3B B; 4JAF A; 4LHN A; 5MGN A; 1R0H A; 2JI1 A; 4AR6 A; 5K2M E; 3KYV A; 1C09 A; 3QVD A; 4WFN 1; 2V0E A; 5RXN A; 1B2O A; 2C6A A; 2Z3Q B; 2A69 D; 3B0A B; 4JAG A; 3ZG6 A; 5AN9 H; 3PIO 1; 1DX8 A; 1T9P A; 1LKP A; 4AR5 A; 4ME3 A; 1OWC A; 4AI1 A; 5MFZ A; 2QL0 A; 1YK4 A; 4E6Y A; 1RYQ A; 2PSM C; 3PWF A; 5H1S c; 1NXG A; 1S24 A; 1R0F A; 1YV1 A; 2ERS A; 1R0G A; 2A6E D; 2B5I D; 3MSU A; 1VZI A; 2KN9 A; 2BE5 D; 4LHL A; 2ERJ A; 2M4V A; 2CKA A; 1WJV A; 5MLC 3; 3LNL A; 1IRO A; 4JAE A; 2LCQ A; 4JAD A; 1FHH A; 8RXN A; 3KYY A; 6RXN A; 1S2Z A; 1VZG A; 3P8B A; 5GAD c; 4K9F A; 4AHX A; 1E8J A; 1YK5 A; 5DM6 1; 2JI3 A; 4XGH A; 2MS3 A; 4AHZ A; 5JVH 1; 3MPS A; 4GS7 D; 3VPB E; 3A44 A; 4AHW A; 1B71 A; 5MFP A; 3J7Y 1; 4RXN A; 5AI3 A; 1IW7 D; 3K35 A; 4AI0 A; 2KKD A; 3B08 B; 1Z92 B; 4TPU A; 4AHY A; 4TVM A; 4AI2 A; 5JVG 1; 2O5J D; 2Z3R B; 1CAA A; 2PPT A; 5EIN C; 1S30 A; 1RDV A; 1LKO A; 2V0F A; 3RYG A; 3J7Z 1; 1VCX A; 3RZ6 A; 2XJP A; 1QCV A; 3KYW A; 4YWL A; 5GAG c; 5MF6 A; 2NYD A; 1R0J A; 4POF A; 4ZN3 B; 1OWB A; 1SMU A; 1VZH A; 3WWN B; 2XJU A; 2CR8 A; 4B8C D; 2ZIX A; 5EIO C; 2XJR A; 1B13 A; 2RDV A; 5AI2 A; 5IY0 A; 1CAD A; 5DM7 1; 1LTL A; 2M6O A; 2XJS A; 1JYB A; 2M4Y A; 2J9U B; 2XJV A; 3IU3 I; 4AR4 A; 3WWL A; 2K2D A; 3PKI A; 4V19 6; 2HR5 A; 2VL6 A; 7RXN A; 2A68 D; 4POG A; 2DSX A; 1IRN A; 1B2J A; 1IU5 A; 2PVE A; 1IU6 A; 1BQ8 A; 3SS2 A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
