2NYFA

Crystal structure of phenylalanine ammonia-lyase from nostoc punctiforme
Total Genus 192
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
192
sequence length
541
structure length
510
Chain Sequence
SIVTVGDRNLTIDEVVNVARHGTQVRLTDNADVIRGVQASCDYINNAVETAISREQAAELQTNLIWFLKSGAGNKLSLADVRAAMLLRANSHLYGASGIRLELIQRIETFLNAGVTPHVYEFGSIGDLVPLSYITGALIGLDPSFTVDFDGKEMDAVTALSRLGLPKLQLQPKEGLAMMNGTSVMTGIAANCVYDAKVLLALTMGVHALAIQGLYGTNQSFHPFIHQCKPHPGQLWTADQMFSLLKDSSLVREEQDRYSLRCLAQFIGPIVDGVSEITKQIEVEMNSVTDNPLIDVENQVSYHGGNFLGQYVGVTMDRLRYYIGLLAKHIDVQIALLVSPEFSNGLPPSLVGNSDRKVNMGLKGLQISGNSIMPLLSFYGNSLADRFPTHAEQFNQNINSQGYISANLTRRSVDIFQNYMAIALMFGVQAVDLRTYKMKGHYDARTCLSPNTVQLYTAVCEVVGKPLTSVRPYIWNDNEQCLDEHIARISADIAGGGLIVQAVEHIFSSL
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule keywords Nostoc punctiforme phenylalanine ammonia lyase
publication title Discovery of Two Cyanobacterial Phenylalanine Ammonia Lyases: Kinetic and Structural Characterization.
pubmed doi rcsb
source organism Nostoc punctiforme
molecule tags Lyase
total genus 192
structure length 510
sequence length 541
ec nomenclature ec 4.3.1.24: Phenylalanine ammonia-lyase.
pdb deposition date 2006-11-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00221 Lyase_aromatic Aromatic amino acid lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.275.10 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase/aspartase (N-terminal domain) 2nyfA01
1.20.200.10 Mainly Alpha Up-down Bundle Fumarase C; Chain A, domain 2 Fumarase/aspartase (Central domain) 2nyfA02
3NZ4A 1GK3A 1K62A 3UNVA 1JSWA 2O6YA 4EEIA 4BABA 4EFCA 1Q5NA 1HY0A 3RRPA 1TJ7A 2RJSA 2OHYA 2YIIA 1U16A 1EB4A 1YISA 4V2RA 1GKMA 2QVEA 4BAAA 1TJUA 3R6VA 4FFXA 2O7FA 4FLCA 4C5SA 1T6PA 2O7BA 1HY1A 5EYTA 2NYNA 1GKJA 1K7WA 2PTSA 1I0AA 1T6JA 5EYVA 2VD6A 1FUQA 1TJVA 5HW2A 2NYFA 1U15A 5F91A 4APBA 1KQ7A 2J91A 2RJRA 3C8TA 1YFEA 2PTQA 4ADMA 1C3CA 2QGAB 3TV2A 4CQ5A 3RD8A 1FUOA 4C5UA 4HGVA 3R6QA 4C6GA 1C3UA 4V2QA 4C5RA 3GTDA 3OCFA 5F92A 3QBPA 4MX2A 3NO9A 1W27A 2FUSA 4ADLA 3GZHA 1DCNA 1Y2MA 2PFMA 1GK2A 2E9FA 2HVGA 5D6BA 1XWOA 3OCEA 3E04A 1FUPA 1YFMA 2O78A 4NSLA 2X75A 3R6YA 4APAA 2O7EA 1AUWA 3KDYA 1TJWA 2PTRA 4NLEA 1J3UA 3CZOA 1B8FA 1FURA 3BHGA 3KDZA 1VDKA 1RE5A 2O7DA 1DOFA
chains in the Genus database with same CATH superfamily
3NZ4A 1GK3A 1K62A 3UNVA 1JSWA 2O6YA 4EEIA 4BABA 4EFCA 1Q5NA 1HY0A 3RRPA 1TJ7A 2RJSA 2OHYA 2YIIA 1U16A 1EB4A 1YISA 4V2RA 1GKMA 2QVEA 4BAAA 1TJUA 3R6VA 4FFXA 4WNLA 2O7FA 4FLCA 4C5SA 1T6PA 2O7BA 1HY1A 5EYTA 2VSFA 2NYNA 1GKJA 1K7WA 2PTSA 1I0AA 1T6JA 5EYVA 2VD6A 1FUQA 2FENA 1TJVA 5HW2A 2NYFA 1U15A 5F91A 4APBA 1KQ7A 2J91A 2RJRA 3C8TA 1YFEA 2PTQA 2FELA 4ADMA 3CRVA 1C3CA 1XL7A 2QGAB 3TV2A 4CQ5A 3RD8A 3CRW1 1FUOA 5M0IA 5H8WA 4C5UA 4HGVA 3R6QA 4C6GA 1C3UA 4V2QA 4C5RA 3GTDA 3OCFA 1XLYA 5F92A 4A15A 3QBPA 4MX2A 3NO9A 1W27A 2FUSA 4ADLA 1XMCA 3GZHA 1DCNA 1Y2MA 2PFMA 1GK2A 2E9FA 1XMDA 2HVGA 5D6BA 2VL7A 1XWOA 3OCEA 1XL8A 1FUPA 3E04A 1YFMA 2O78A 4NSLA 2X75A 3R6YA 4APAA 2O7EA 1AUWA 3KDYA 1TJWA 5M0JA 2PTRA 4NLEA 1J3UA 3CZOA 1B8FA 1FURA 3BHGA 3KDZA 1VDKA 1RE5A 2O7DA 1DOFA
chains in the Genus database with same CATH topology
3NZ4A 1GK3A 1K62A 3UNVA 1JSWA 2O6YA 4EEIA 4BABA 4EFCA 1Q5NA 1HY0A 3RRPA 1TJ7A 2RJSA 2OHYA 2YIIA 1U16A 1EB4A 1YISA 4V2RA 1GKMA 2QVEA 4BAAA 1TJUA 3R6VA 4FFXA 2O7FA 4FLCA 4C5SA 1T6PA 2O7BA 1HY1A 5EYTA 2NYNA 1GKJA 1K7WA 2PTSA 1I0AA 1T6JA 5EYVA 2VD6A 1FUQA 1TJVA 5HW2A 2NYFA 1U15A 5F91A 4APBA 1KQ7A 2J91A 2RJRA 3C8TA 1YFEA 2PTQA 4ADMA 1C3CA 2QGAB 3TV2A 4CQ5A 3RD8A 1FUOA 4C5UA 4HGVA 3R6QA 4C6GA 1C3UA 4V2QA 4C5RA 3GTDA 3OCFA 5F92A 3QBPA 4MX2A 3NO9A 1W27A 2FUSA 4ADLA 3GZHA 1DCNA 1Y2MA 2PFMA 1GK2A 2E9FA 2HVGA 5D6BA 1XWOA 3OCEA 3E04A 1FUPA 1YFMA 2O78A 4NSLA 2X75A 3R6YA 4APAA 2O7EA 1AUWA 3KDYA 1TJWA 2PTRA 4NLEA 1J3UA 3CZOA 1B8FA 1FURA 3BHGA 3KDZA 1VDKA 1RE5A 2O7DA 1DOFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3NZ4 A;  1GK3 A;  1K62 A;  3UNV A;  1JSW A;  2O6Y A;  4EEI A;  4BAB A;  4EFC A;  1Q5N A;  1HY0 A;  3RRP A;  1TJ7 A;  2RJS A;  2OHY A;  2YII A;  1U16 A;  1EB4 A;  1YIS A;  4V2R A;  1GKM A;  2QVE A;  4BAA A;  1TJU A;  3R6V A;  4FFX A;  2O7F A;  4FLC A;  4C5S A;  1T6P A;  2O7B A;  1HY1 A;  5EYT A;  2NYN A;  1GKJ A;  1K7W A;  2PTS A;  1I0A A;  1T6J A;  5EYV A;  2VD6 A;  1FUQ A;  1TJV A;  5HW2 A;  2NYF A;  1U15 A;  5F91 A;  4APB A;  1KQ7 A;  2J91 A;  2RJR A;  3C8T A;  1YFE A;  2PTQ A;  4ADM A;  1C3C A;  2QGA B;  3TV2 A;  4CQ5 A;  3RD8 A;  1FUO A;  4C5U A;  4HGV A;  3R6Q A;  4C6G A;  1C3U A;  4V2Q A;  4C5R A;  3GTD A;  3OCF A;  5F92 A;  3QBP A;  4MX2 A;  3NO9 A;  1W27 A;  2FUS A;  4ADL A;  3GZH A;  1DCN A;  1Y2M A;  2PFM A;  1GK2 A;  2E9F A;  2HVG A;  5D6B A;  1XWO A;  3OCE A;  3E04 A;  1FUP A;  1YFM A;  2O78 A;  4NSL A;  2X75 A;  3R6Y A;  4APA A;  2O7E A;  1AUW A;  3KDY A;  1TJW A;  2PTR A;  4NLE A;  1J3U A;  3CZO A;  1B8F A;  1FUR A;  3BHG A;  3KDZ A;  1VDK A;  1RE5 A;  2O7D A;  1DOF A; 
#chains in the Genus database with same CATH topology
 3NZ4 A;  1GK3 A;  1K62 A;  3UNV A;  1JSW A;  2O6Y A;  4EEI A;  4BAB A;  4EFC A;  1Q5N A;  1HY0 A;  3RRP A;  1TJ7 A;  2RJS A;  2OHY A;  2YII A;  1U16 A;  1EB4 A;  1YIS A;  4V2R A;  1GKM A;  2QVE A;  4BAA A;  1TJU A;  3R6V A;  4FFX A;  4WNL A;  2O7F A;  4FLC A;  4C5S A;  1T6P A;  2O7B A;  1HY1 A;  5EYT A;  2VSF A;  2NYN A;  1GKJ A;  1K7W A;  2PTS A;  1I0A A;  1T6J A;  5EYV A;  2VD6 A;  1FUQ A;  2FEN A;  1TJV A;  5HW2 A;  2NYF A;  1U15 A;  5F91 A;  4APB A;  1KQ7 A;  2J91 A;  2RJR A;  3C8T A;  1YFE A;  2PTQ A;  2FEL A;  4ADM A;  3CRV A;  1C3C A;  1XL7 A;  2QGA B;  3TV2 A;  4CQ5 A;  3RD8 A;  3CRW 1;  1FUO A;  5M0I A;  5H8W A;  4C5U A;  4HGV A;  3R6Q A;  4C6G A;  1C3U A;  4V2Q A;  4C5R A;  3GTD A;  3OCF A;  1XLY A;  5F92 A;  4A15 A;  3QBP A;  4MX2 A;  3NO9 A;  1W27 A;  2FUS A;  4ADL A;  1XMC A;  3GZH A;  1DCN A;  1Y2M A;  2PFM A;  1GK2 A;  2E9F A;  1XMD A;  2HVG A;  5D6B A;  2VL7 A;  1XWO A;  3OCE A;  1XL8 A;  1FUP A;  3E04 A;  1YFM A;  2O78 A;  4NSL A;  2X75 A;  3R6Y A;  4APA A;  2O7E A;  1AUW A;  3KDY A;  1TJW A;  5M0J A;  2PTR A;  4NLE A;  1J3U A;  3CZO A;  1B8F A;  1FUR A;  3BHG A;  3KDZ A;  1VDK A;  1RE5 A;  2O7D A;  1DOF A; 
#chains in the Genus database with same CATH homology
 3NZ4 A;  1GK3 A;  1K62 A;  3UNV A;  1JSW A;  2O6Y A;  4EEI A;  4BAB A;  4EFC A;  1Q5N A;  1HY0 A;  3RRP A;  1TJ7 A;  2RJS A;  2OHY A;  2YII A;  1U16 A;  1EB4 A;  1YIS A;  4V2R A;  1GKM A;  2QVE A;  4BAA A;  1TJU A;  3R6V A;  4FFX A;  2O7F A;  4FLC A;  4C5S A;  1T6P A;  2O7B A;  1HY1 A;  5EYT A;  2NYN A;  1GKJ A;  1K7W A;  2PTS A;  1I0A A;  1T6J A;  5EYV A;  2VD6 A;  1FUQ A;  1TJV A;  5HW2 A;  2NYF A;  1U15 A;  5F91 A;  4APB A;  1KQ7 A;  2J91 A;  2RJR A;  3C8T A;  1YFE A;  2PTQ A;  4ADM A;  1C3C A;  2QGA B;  3TV2 A;  4CQ5 A;  3RD8 A;  1FUO A;  4C5U A;  4HGV A;  3R6Q A;  4C6G A;  1C3U A;  4V2Q A;  4C5R A;  3GTD A;  3OCF A;  5F92 A;  3QBP A;  4MX2 A;  3NO9 A;  1W27 A;  2FUS A;  4ADL A;  3GZH A;  1DCN A;  1Y2M A;  2PFM A;  1GK2 A;  2E9F A;  2HVG A;  5D6B A;  1XWO A;  3OCE A;  3E04 A;  1FUP A;  1YFM A;  2O78 A;  4NSL A;  2X75 A;  3R6Y A;  4APA A;  2O7E A;  1AUW A;  3KDY A;  1TJW A;  2PTR A;  4NLE A;  1J3U A;  3CZO A;  1B8F A;  1FUR A;  3BHG A;  3KDZ A;  1VDK A;  1RE5 A;  2O7D A;  1DOF A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...