2NYFA

Crystal structure of phenylalanine ammonia-lyase from nostoc punctiforme
Total Genus 192
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
192
sequence length
541
structure length
510
Chain Sequence
SIVTVGDRNLTIDEVVNVARHGTQVRLTDNADVIRGVQASCDYINNAVETAISREQAAELQTNLIWFLKSGAGNKLSLADVRAAMLLRANSHLYGASGIRLELIQRIETFLNAGVTPHVYEFGSIGDLVPLSYITGALIGLDPSFTVDFDGKEMDAVTALSRLGLPKLQLQPKEGLAMMNGTSVMTGIAANCVYDAKVLLALTMGVHALAIQGLYGTNQSFHPFIHQCKPHPGQLWTADQMFSLLKDSSLVREEQDRYSLRCLAQFIGPIVDGVSEITKQIEVEMNSVTDNPLIDVENQVSYHGGNFLGQYVGVTMDRLRYYIGLLAKHIDVQIALLVSPEFSNGLPPSLVGNSDRKVNMGLKGLQISGNSIMPLLSFYGNSLADRFPTHAEQFNQNINSQGYISANLTRRSVDIFQNYMAIALMFGVQAVDLRTYKMKGHYDARTCLSPNTVQLYTAVCEVVGKPLTSVRPYIWNDNEQCLDEHIARISADIAGGGLIVQAVEHIFSSL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Discovery of Two Cyanobacterial Phenylalanine Ammonia Lyases: Kinetic and Structural Characterization.
pubmed doi rcsb
source organism Nostoc punctiforme
molecule tags Lyase
molecule keywords Nostoc punctiforme phenylalanine ammonia lyase
total genus 192
structure length 510
sequence length 541
ec nomenclature ec 4.3.1.24: Phenylalanine ammonia-lyase.
pdb deposition date 2006-11-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00221 Lyase_aromatic Aromatic amino acid lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.275.10 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase/aspartase (N-terminal domain) 2nyfA01
1.20.200.10 Mainly Alpha Up-down Bundle Fumarase C; Chain A, domain 2 Fumarase/aspartase (Central domain) 2nyfA02
1RE5A 3TV2A 5F92A 3C8TA 2O6YA 1T6JA 4EFCA 3CZOA 1FUOA 4C6GA 2NYFA 4CQ5A 1C3UA 3BHGA 3NZ4A 1YISA 2X75A 1W27A 1GKJA 4BABA 3KDZA 3GZHA 2O7FA 3E04A 5F91A 1FURA 1DOFA 4ADLA 2E9FA 1EB4A 1KQ7A 1GK2A 1JSWA 2O7EA 1J3UA 1K7WA 4HGVA 1T6PA 3RRPA 1C3CA 2QGAB 1Y2MA 2QVEA 2RJSA 4APAA 3R6VA 3KDYA 2OHYA 2RJRA 2YIIA 5EYVA 1K62A 5HW2A 1Q5NA 2FUSA 4C5RA 4ADMA 1TJWA 4EEIA 1FUQA 2PTRA 1TJUA 1TJ7A 2O7DA 3OCEA 1GK3A 2PFMA 1FUPA 2O7BA 2HVGA 2J91A 4BAAA 1VDKA 1U15A 4MX2A 1HY0A 1XWOA 3UNVA 3OCFA 3R6QA 2VD6A 4NSLA 1I0AA 4V2RA 4NLEA 5EYTA 1HY1A 1AUWA 1YFEA 4FLCA 3RD8A 2PTSA 2PTQA 4FFXA 1GKMA 3QBPA 5D6BA 4C5UA 2NYNA 1TJVA 1YFMA 4V2QA 1B8FA 1U16A 3NO9A 2O78A 3GTDA 1DCNA 3R6YA 4C5SA 4APBA
chains in the Genus database with same CATH superfamily
1RE5A 3TV2A 5F92A 3C8TA 2O6YA 1T6JA 4EFCA 3CZOA 1FUOA 1XL7A 4C6GA 2NYFA 4CQ5A 1C3UA 3BHGA 3NZ4A 1YISA 2X75A 1W27A 5H8WA 1GKJA 4BABA 5M0IA 1XL8A 3KDZA 3GZHA 2O7FA 3E04A 5F91A 2VSFA 1FURA 1DOFA 2E9FA 4ADLA 1EB4A 1KQ7A 4A15A 1GK2A 1JSWA 2FENA 2O7EA 5M0JA 1J3UA 1K7WA 4HGVA 1T6PA 3RRPA 3CRW1 1C3CA 2QGAB 1Y2MA 2QVEA 2RJSA 4APAA 3R6VA 3KDYA 2OHYA 2RJRA 2YIIA 5EYVA 1XMDA 1K62A 5HW2A 1Q5NA 2FUSA 4C5RA 4ADMA 1TJWA 3CRVA 4WNLA 4EEIA 1FUQA 2PTRA 1TJUA 2FELA 1TJ7A 2O7DA 3OCEA 1GK3A 2PFMA 1FUPA 2O7BA 1XLYA 2HVGA 2J91A 4BAAA 1VDKA 1U15A 4MX2A 1HY0A 1XWOA 3UNVA 3OCFA 3R6QA 2VD6A 4NSLA 1XMCA 2VL7A 1I0AA 4V2RA 4NLEA 5EYTA 1HY1A 1AUWA 1YFEA 4FLCA 3RD8A 2PTSA 2PTQA 1GKMA 3QBPA 4FFXA 5D6BA 4C5UA 2NYNA 1TJVA 1YFMA 4V2QA 1B8FA 1U16A 3NO9A 2O78A 3GTDA 1DCNA 3R6YA 4C5SA 4APBA
chains in the Genus database with same CATH topology
1RE5A 3TV2A 5F92A 3C8TA 2O6YA 1T6JA 4EFCA 3CZOA 1FUOA 4C6GA 2NYFA 4CQ5A 1C3UA 3BHGA 3NZ4A 1YISA 2X75A 1W27A 1GKJA 4BABA 3KDZA 3GZHA 2O7FA 3E04A 5F91A 1FURA 1DOFA 4ADLA 2E9FA 1EB4A 1KQ7A 1GK2A 1JSWA 2O7EA 1J3UA 1K7WA 4HGVA 1T6PA 3RRPA 1C3CA 2QGAB 1Y2MA 2QVEA 2RJSA 4APAA 3R6VA 3KDYA 2OHYA 2RJRA 2YIIA 5EYVA 1K62A 5HW2A 1Q5NA 2FUSA 4C5RA 4ADMA 1TJWA 4EEIA 1FUQA 2PTRA 1TJUA 1TJ7A 2O7DA 3OCEA 1GK3A 2PFMA 1FUPA 2O7BA 2HVGA 2J91A 4BAAA 1VDKA 1U15A 4MX2A 1HY0A 1XWOA 3UNVA 3OCFA 3R6QA 2VD6A 4NSLA 1I0AA 4V2RA 4NLEA 5EYTA 1HY1A 1AUWA 1YFEA 4FLCA 3RD8A 2PTSA 2PTQA 4FFXA 1GKMA 3QBPA 5D6BA 4C5UA 2NYNA 1TJVA 1YFMA 4V2QA 1B8FA 1U16A 3NO9A 2O78A 3GTDA 1DCNA 3R6YA 4C5SA 4APBA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1RE5 A;  3TV2 A;  5F92 A;  3C8T A;  2O6Y A;  1T6J A;  4EFC A;  3CZO A;  1FUO A;  4C6G A;  2NYF A;  4CQ5 A;  1C3U A;  3BHG A;  3NZ4 A;  1YIS A;  2X75 A;  1W27 A;  1GKJ A;  4BAB A;  3KDZ A;  3GZH A;  2O7F A;  3E04 A;  5F91 A;  1FUR A;  1DOF A;  4ADL A;  2E9F A;  1EB4 A;  1KQ7 A;  1GK2 A;  1JSW A;  2O7E A;  1J3U A;  1K7W A;  4HGV A;  1T6P A;  3RRP A;  1C3C A;  2QGA B;  1Y2M A;  2QVE A;  2RJS A;  4APA A;  3R6V A;  3KDY A;  2OHY A;  2RJR A;  2YII A;  5EYV A;  1K62 A;  5HW2 A;  1Q5N A;  2FUS A;  4C5R A;  4ADM A;  1TJW A;  4EEI A;  1FUQ A;  2PTR A;  1TJU A;  1TJ7 A;  2O7D A;  3OCE A;  1GK3 A;  2PFM A;  1FUP A;  2O7B A;  2HVG A;  2J91 A;  4BAA A;  1VDK A;  1U15 A;  4MX2 A;  1HY0 A;  1XWO A;  3UNV A;  3OCF A;  3R6Q A;  2VD6 A;  4NSL A;  1I0A A;  4V2R A;  4NLE A;  5EYT A;  1HY1 A;  1AUW A;  1YFE A;  4FLC A;  3RD8 A;  2PTS A;  2PTQ A;  4FFX A;  1GKM A;  3QBP A;  5D6B A;  4C5U A;  2NYN A;  1TJV A;  1YFM A;  4V2Q A;  1B8F A;  1U16 A;  3NO9 A;  2O78 A;  3GTD A;  1DCN A;  3R6Y A;  4C5S A;  4APB A; 
#chains in the Genus database with same CATH topology
 1RE5 A;  3TV2 A;  5F92 A;  3C8T A;  2O6Y A;  1T6J A;  4EFC A;  3CZO A;  1FUO A;  1XL7 A;  4C6G A;  2NYF A;  4CQ5 A;  1C3U A;  3BHG A;  3NZ4 A;  1YIS A;  2X75 A;  1W27 A;  5H8W A;  1GKJ A;  4BAB A;  5M0I A;  1XL8 A;  3KDZ A;  3GZH A;  2O7F A;  3E04 A;  5F91 A;  2VSF A;  1FUR A;  1DOF A;  2E9F A;  4ADL A;  1EB4 A;  1KQ7 A;  4A15 A;  1GK2 A;  1JSW A;  2FEN A;  2O7E A;  5M0J A;  1J3U A;  1K7W A;  4HGV A;  1T6P A;  3RRP A;  3CRW 1;  1C3C A;  2QGA B;  1Y2M A;  2QVE A;  2RJS A;  4APA A;  3R6V A;  3KDY A;  2OHY A;  2RJR A;  2YII A;  5EYV A;  1XMD A;  1K62 A;  5HW2 A;  1Q5N A;  2FUS A;  4C5R A;  4ADM A;  1TJW A;  3CRV A;  4WNL A;  4EEI A;  1FUQ A;  2PTR A;  1TJU A;  2FEL A;  1TJ7 A;  2O7D A;  3OCE A;  1GK3 A;  2PFM A;  1FUP A;  2O7B A;  1XLY A;  2HVG A;  2J91 A;  4BAA A;  1VDK A;  1U15 A;  4MX2 A;  1HY0 A;  1XWO A;  3UNV A;  3OCF A;  3R6Q A;  2VD6 A;  4NSL A;  1XMC A;  2VL7 A;  1I0A A;  4V2R A;  4NLE A;  5EYT A;  1HY1 A;  1AUW A;  1YFE A;  4FLC A;  3RD8 A;  2PTS A;  2PTQ A;  1GKM A;  3QBP A;  4FFX A;  5D6B A;  4C5U A;  2NYN A;  1TJV A;  1YFM A;  4V2Q A;  1B8F A;  1U16 A;  3NO9 A;  2O78 A;  3GTD A;  1DCN A;  3R6Y A;  4C5S A;  4APB A; 
#chains in the Genus database with same CATH homology
 1RE5 A;  3TV2 A;  5F92 A;  3C8T A;  2O6Y A;  1T6J A;  4EFC A;  3CZO A;  1FUO A;  4C6G A;  2NYF A;  4CQ5 A;  1C3U A;  3BHG A;  3NZ4 A;  1YIS A;  2X75 A;  1W27 A;  1GKJ A;  4BAB A;  3KDZ A;  3GZH A;  2O7F A;  3E04 A;  5F91 A;  1FUR A;  1DOF A;  4ADL A;  2E9F A;  1EB4 A;  1KQ7 A;  1GK2 A;  1JSW A;  2O7E A;  1J3U A;  1K7W A;  4HGV A;  1T6P A;  3RRP A;  1C3C A;  2QGA B;  1Y2M A;  2QVE A;  2RJS A;  4APA A;  3R6V A;  3KDY A;  2OHY A;  2RJR A;  2YII A;  5EYV A;  1K62 A;  5HW2 A;  1Q5N A;  2FUS A;  4C5R A;  4ADM A;  1TJW A;  4EEI A;  1FUQ A;  2PTR A;  1TJU A;  1TJ7 A;  2O7D A;  3OCE A;  1GK3 A;  2PFM A;  1FUP A;  2O7B A;  2HVG A;  2J91 A;  4BAA A;  1VDK A;  1U15 A;  4MX2 A;  1HY0 A;  1XWO A;  3UNV A;  3OCF A;  3R6Q A;  2VD6 A;  4NSL A;  1I0A A;  4V2R A;  4NLE A;  5EYT A;  1HY1 A;  1AUW A;  1YFE A;  4FLC A;  3RD8 A;  2PTS A;  2PTQ A;  4FFX A;  1GKM A;  3QBP A;  5D6B A;  4C5U A;  2NYN A;  1TJV A;  1YFM A;  4V2Q A;  1B8F A;  1U16 A;  3NO9 A;  2O78 A;  3GTD A;  1DCN A;  3R6Y A;  4C5S A;  4APB A; 
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