2NYFA

Crystal structure of phenylalanine ammonia-lyase from nostoc punctiforme
Total Genus 192
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
192
sequence length
541
structure length
510
Chain Sequence
SIVTVGDRNLTIDEVVNVARHGTQVRLTDNADVIRGVQASCDYINNAVETAISREQAAELQTNLIWFLKSGAGNKLSLADVRAAMLLRANSHLYGASGIRLELIQRIETFLNAGVTPHVYEFGSIGDLVPLSYITGALIGLDPSFTVDFDGKEMDAVTALSRLGLPKLQLQPKEGLAMMNGTSVMTGIAANCVYDAKVLLALTMGVHALAIQGLYGTNQSFHPFIHQCKPHPGQLWTADQMFSLLKDSSLVREEQDRYSLRCLAQFIGPIVDGVSEITKQIEVEMNSVTDNPLIDVENQVSYHGGNFLGQYVGVTMDRLRYYIGLLAKHIDVQIALLVSPEFSNGLPPSLVGNSDRKVNMGLKGLQISGNSIMPLLSFYGNSLADRFPTHAEQFNQNINSQGYISANLTRRSVDIFQNYMAIALMFGVQAVDLRTYKMKGHYDARTCLSPNTVQLYTAVCEVVGKPLTSVRPYIWNDNEQCLDEHIARISADIAGGGLIVQAVEHIFSSL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Nostoc punctiforme phenylalanine ammonia lyase
publication title Discovery of Two Cyanobacterial Phenylalanine Ammonia Lyases: Kinetic and Structural Characterization.
pubmed doi rcsb
source organism Nostoc punctiforme
molecule tags Lyase
total genus 192
structure length 510
sequence length 541
ec nomenclature ec 4.3.1.24: Phenylalanine ammonia-lyase.
pdb deposition date 2006-11-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00221 Lyase_aromatic Aromatic amino acid lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.275.10 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase/aspartase (N-terminal domain) 2nyfA01
1.20.200.10 Mainly Alpha Up-down Bundle Fumarase C; Chain A, domain 2 Fumarase/aspartase (Central domain) 2nyfA02
2VD6A 3UNVA 1HY0A 3R6VA 4APAA 2YIIA 2O78A 1T6JA 2O7EA 1U16A 1C3CA 5EYVA 2PTSA 3GZHA 2QGAB 3R6QA 1GKJA 4CQ5A 2NYFA 4EEIA 1Q5NA 3OCFA 1AUWA 4NSLA 3R6YA 1K62A 2PTRA 3E04A 4HGVA 2PTQA 5F91A 1T6PA 1RE5A 1YFMA 1YFEA 2NYNA 3TV2A 5F92A 1EB4A 1GKMA 4MX2A 1DOFA 1B8FA 4ADLA 4C5RA 2OHYA 1U15A 1DCNA 1I0AA 1HY1A 2RJSA 1VDKA 2O6YA 4C6GA 2O7DA 3NO9A 4C5SA 1GK2A 4C5UA 3RRPA 2PFMA 1W27A 4EFCA 3KDYA 4V2QA 3GTDA 4APBA 1YISA 3CZOA 3RD8A 4NLEA 1GK3A 3NZ4A 5HW2A 1C3UA 3C8TA 2HVGA 4BABA 4BAAA 2FUSA 3BHGA 3KDZA 1FUPA 4ADMA 1FUQA 1K7WA 3QBPA 5D6BA 1TJUA 2O7FA 1FUOA 4FFXA 2X75A 1KQ7A 1TJVA 4FLCA 2O7BA 2RJRA 1JSWA 1TJ7A 3OCEA 1J3UA 1XWOA 4V2RA 1TJWA 5EYTA 2J91A 2QVEA 2E9FA 1Y2MA 1FURA
chains in the Genus database with same CATH superfamily
2VD6A 3UNVA 1HY0A 3R6VA 4APAA 2YIIA 2O78A 1T6JA 2O7EA 1U16A 1C3CA 5M0JA 5EYVA 2PTSA 3GZHA 2QGAB 3R6QA 1GKJA 4CQ5A 2NYFA 4EEIA 1Q5NA 2VSFA 3OCFA 1AUWA 4NSLA 1XL8A 3R6YA 1K62A 2PTRA 3E04A 4HGVA 2PTQA 5F91A 1T6PA 1RE5A 1YFMA 1YFEA 2NYNA 3TV2A 5F92A 1EB4A 1GKMA 4MX2A 1DOFA 1B8FA 5M0IA 2FENA 4ADLA 4C5RA 2OHYA 1U15A 1DCNA 1I0AA 1HY1A 2RJSA 1VDKA 2O6YA 4C6GA 2O7DA 3NO9A 4C5SA 1GK2A 4C5UA 3RRPA 2PFMA 1W27A 2VL7A 3KDYA 4V2QA 4EFCA 3GTDA 3CRVA 4APBA 1YISA 3CZOA 3RD8A 4NLEA 1GK3A 3NZ4A 5HW2A 1C3UA 3C8TA 4A15A 2HVGA 1XMDA 4BABA 4BAAA 1XL7A 2FUSA 3BHGA 3KDZA 1FUPA 4ADMA 1FUQA 1K7WA 3QBPA 5H8WA 5D6BA 1TJUA 2FELA 2O7FA 1FUOA 1XMCA 4FFXA 2X75A 1KQ7A 1TJVA 4FLCA 2O7BA 2RJRA 1JSWA 1TJ7A 3OCEA 1J3UA 1XWOA 1XLYA 4V2RA 1TJWA 4WNLA 5EYTA 2J91A 2QVEA 2E9FA 1Y2MA 1FURA 3CRW1
chains in the Genus database with same CATH topology
2VD6A 3UNVA 1HY0A 3R6VA 4APAA 2YIIA 2O78A 1T6JA 2O7EA 1U16A 1C3CA 5EYVA 2PTSA 3GZHA 2QGAB 3R6QA 1GKJA 4CQ5A 2NYFA 4EEIA 1Q5NA 3OCFA 1AUWA 4NSLA 3R6YA 1K62A 2PTRA 3E04A 4HGVA 2PTQA 5F91A 1T6PA 1RE5A 1YFMA 1YFEA 2NYNA 3TV2A 5F92A 1EB4A 1GKMA 4MX2A 1DOFA 1B8FA 4ADLA 4C5RA 2OHYA 1U15A 1DCNA 1I0AA 1HY1A 2RJSA 1VDKA 2O6YA 4C6GA 2O7DA 3NO9A 4C5SA 1GK2A 4C5UA 3RRPA 2PFMA 1W27A 4EFCA 3KDYA 4V2QA 3GTDA 4APBA 1YISA 3CZOA 3RD8A 4NLEA 1GK3A 3NZ4A 5HW2A 1C3UA 3C8TA 2HVGA 4BABA 4BAAA 2FUSA 3BHGA 3KDZA 1FUPA 4ADMA 1FUQA 1K7WA 3QBPA 5D6BA 1TJUA 2O7FA 1FUOA 4FFXA 2X75A 1KQ7A 1TJVA 4FLCA 2O7BA 2RJRA 1JSWA 1TJ7A 3OCEA 1J3UA 1XWOA 4V2RA 1TJWA 5EYTA 2J91A 2QVEA 2E9FA 1Y2MA 1FURA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2VD6 A;  3UNV A;  1HY0 A;  3R6V A;  4APA A;  2YII A;  2O78 A;  1T6J A;  2O7E A;  1U16 A;  1C3C A;  5EYV A;  2PTS A;  3GZH A;  2QGA B;  3R6Q A;  1GKJ A;  4CQ5 A;  2NYF A;  4EEI A;  1Q5N A;  3OCF A;  1AUW A;  4NSL A;  3R6Y A;  1K62 A;  2PTR A;  3E04 A;  4HGV A;  2PTQ A;  5F91 A;  1T6P A;  1RE5 A;  1YFM A;  1YFE A;  2NYN A;  3TV2 A;  5F92 A;  1EB4 A;  1GKM A;  4MX2 A;  1DOF A;  1B8F A;  4ADL A;  4C5R A;  2OHY A;  1U15 A;  1DCN A;  1I0A A;  1HY1 A;  2RJS A;  1VDK A;  2O6Y A;  4C6G A;  2O7D A;  3NO9 A;  4C5S A;  1GK2 A;  4C5U A;  3RRP A;  2PFM A;  1W27 A;  4EFC A;  3KDY A;  4V2Q A;  3GTD A;  4APB A;  1YIS A;  3CZO A;  3RD8 A;  4NLE A;  1GK3 A;  3NZ4 A;  5HW2 A;  1C3U A;  3C8T A;  2HVG A;  4BAB A;  4BAA A;  2FUS A;  3BHG A;  3KDZ A;  1FUP A;  4ADM A;  1FUQ A;  1K7W A;  3QBP A;  5D6B A;  1TJU A;  2O7F A;  1FUO A;  4FFX A;  2X75 A;  1KQ7 A;  1TJV A;  4FLC A;  2O7B A;  2RJR A;  1JSW A;  1TJ7 A;  3OCE A;  1J3U A;  1XWO A;  4V2R A;  1TJW A;  5EYT A;  2J91 A;  2QVE A;  2E9F A;  1Y2M A;  1FUR A; 
#chains in the Genus database with same CATH topology
 2VD6 A;  3UNV A;  1HY0 A;  3R6V A;  4APA A;  2YII A;  2O78 A;  1T6J A;  2O7E A;  1U16 A;  1C3C A;  5M0J A;  5EYV A;  2PTS A;  3GZH A;  2QGA B;  3R6Q A;  1GKJ A;  4CQ5 A;  2NYF A;  4EEI A;  1Q5N A;  2VSF A;  3OCF A;  1AUW A;  4NSL A;  1XL8 A;  3R6Y A;  1K62 A;  2PTR A;  3E04 A;  4HGV A;  2PTQ A;  5F91 A;  1T6P A;  1RE5 A;  1YFM A;  1YFE A;  2NYN A;  3TV2 A;  5F92 A;  1EB4 A;  1GKM A;  4MX2 A;  1DOF A;  1B8F A;  5M0I A;  2FEN A;  4ADL A;  4C5R A;  2OHY A;  1U15 A;  1DCN A;  1I0A A;  1HY1 A;  2RJS A;  1VDK A;  2O6Y A;  4C6G A;  2O7D A;  3NO9 A;  4C5S A;  1GK2 A;  4C5U A;  3RRP A;  2PFM A;  1W27 A;  2VL7 A;  3KDY A;  4V2Q A;  4EFC A;  3GTD A;  3CRV A;  4APB A;  1YIS A;  3CZO A;  3RD8 A;  4NLE A;  1GK3 A;  3NZ4 A;  5HW2 A;  1C3U A;  3C8T A;  4A15 A;  2HVG A;  1XMD A;  4BAB A;  4BAA A;  1XL7 A;  2FUS A;  3BHG A;  3KDZ A;  1FUP A;  4ADM A;  1FUQ A;  1K7W A;  3QBP A;  5H8W A;  5D6B A;  1TJU A;  2FEL A;  2O7F A;  1FUO A;  1XMC A;  4FFX A;  2X75 A;  1KQ7 A;  1TJV A;  4FLC A;  2O7B A;  2RJR A;  1JSW A;  1TJ7 A;  3OCE A;  1J3U A;  1XWO A;  1XLY A;  4V2R A;  1TJW A;  4WNL A;  5EYT A;  2J91 A;  2QVE A;  2E9F A;  1Y2M A;  1FUR A;  3CRW 1; 
#chains in the Genus database with same CATH homology
 2VD6 A;  3UNV A;  1HY0 A;  3R6V A;  4APA A;  2YII A;  2O78 A;  1T6J A;  2O7E A;  1U16 A;  1C3C A;  5EYV A;  2PTS A;  3GZH A;  2QGA B;  3R6Q A;  1GKJ A;  4CQ5 A;  2NYF A;  4EEI A;  1Q5N A;  3OCF A;  1AUW A;  4NSL A;  3R6Y A;  1K62 A;  2PTR A;  3E04 A;  4HGV A;  2PTQ A;  5F91 A;  1T6P A;  1RE5 A;  1YFM A;  1YFE A;  2NYN A;  3TV2 A;  5F92 A;  1EB4 A;  1GKM A;  4MX2 A;  1DOF A;  1B8F A;  4ADL A;  4C5R A;  2OHY A;  1U15 A;  1DCN A;  1I0A A;  1HY1 A;  2RJS A;  1VDK A;  2O6Y A;  4C6G A;  2O7D A;  3NO9 A;  4C5S A;  1GK2 A;  4C5U A;  3RRP A;  2PFM A;  1W27 A;  4EFC A;  3KDY A;  4V2Q A;  3GTD A;  4APB A;  1YIS A;  3CZO A;  3RD8 A;  4NLE A;  1GK3 A;  3NZ4 A;  5HW2 A;  1C3U A;  3C8T A;  2HVG A;  4BAB A;  4BAA A;  2FUS A;  3BHG A;  3KDZ A;  1FUP A;  4ADM A;  1FUQ A;  1K7W A;  3QBP A;  5D6B A;  1TJU A;  2O7F A;  1FUO A;  4FFX A;  2X75 A;  1KQ7 A;  1TJV A;  4FLC A;  2O7B A;  2RJR A;  1JSW A;  1TJ7 A;  3OCE A;  1J3U A;  1XWO A;  4V2R A;  1TJW A;  5EYT A;  2J91 A;  2QVE A;  2E9F A;  1Y2M A;  1FUR A; 
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