2NZMA

Hexasaccharide i bound to bacillus subtilis pectate lyase
Total Genus 162
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
162
sequence length
399
structure length
399
Chain Sequence
ADLGHQTLGSNDGWGAYSTGTTGGSKASSSNVYTVSNRNQLVSALGKETNTTPKIIYIKGTIDMNVDDNLKPLGLNDYKDPEYDLDKYLKAYDPSTWGKKEPSGTQEEARARSQKNQKARVMVDIPANTTIVGSGTNAKVVGGNFQIKSDNVIIRNIEFQDAYDYFPQWDPTDGSSGNWNSQYDNITINGGTHIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITMSYNYYHDHDKSSIFGSSDSKTSDDGKLKITLHHNRYKNIVQAAPRVRFGQVHVYNNYYEGSTSSSSYPFSYAWGIGKSSKIYAQNNVIDVPGLSAAKTISVFSGGTALYDSGTLLNGTQINASAANGLSSSVGWTPSLHGSIDASANVKSNVINQAGAGKLN
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Structural insights into substrate specificity and the anti beta-elimination mechanism of pectate lyase.
pubmed doi rcsb
source organism Bacillus subtilis
molecule tags Lyase
molecule keywords Pectate lyase
total genus 162
structure length 399
sequence length 399
ec nomenclature ec 4.2.2.2: Pectate lyase.
pdb deposition date 2006-11-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00544 Pec_lyase_C Pectate lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 2nzmA00
1KTWA 1O8DA 1X0CA 4XKVA 4Z06A 1OFLA 4HWVA 1RWRA 4XN3A 2O17A 2Z8GA 1JRGA 1VBLA 2NTPA 4XMYA 2INVA 2O1DA 1QJVA 2O0VA 1IB4A 4XKWA 1GQ8A 5C1EA 4W8RA 4W8TA 3B90A 4XOTA 2NTBA 2ODLA 4MR0A 4XONA 3B8YA 2UVEA 3VSVA 4XN0A 4YZXA 3JURA 3VMWA 1BN8A 4YEJA 4XLCA 4AVZA 3B4NA 4XOPA 4OZZA 4I84A 2UVFA 2PYHA 1OFMA 4EW9A 2QXZA 1OGMX 1IDKA 1O8FA 1BHEA 4XORA 4YZ0A 2VBMA 2IQ7A 3GQ9A 4NK6A 4XLAA 1O8EA 3VMVA 3ZSCA 1O8IA 4YELA 1O8HA 2NT6A 2EWEA 2VJJA 4XNFA 1OGOX 1O88A 2O04A 4OZYA 1DBOA 3GQ7A 2QX3A 1O8GA 3FY3A 3EQNA 4U49A 2VJIA 2NT9A 1H80A 2X6WA 2X85A 3VSUA 1EE6A 4XLFA 4XM3A 1IDJA 1NHCA 4YZAA 4OJ6A 2NSTA 2X6YA 4Z03A 3VSTA 4XQFA 1O8MA 4XLEA 1O8JA 2VBKA 1KCDA 3KRGA 2QY1A 1PXZA 2O0WA 3EQOA 3LMWA 4MXNA 4OJOA 2X6XA 4Z05A 4URRA 3WWGA 1K5CA 2PYGA 4U4BA 1KCCA 1AIRA 3GRHA 2BSPA 3GQ8A 1PE9A 1JTAA 2PECA 2VBEA 4OJPA 1DBGA 3UW0A 1CZFA 3ZPPA 4W8QA 1O8KA 1RMGA 2NTQA 3GQAA 4XR6A 3T9GA 4C2LA 1PLUA 4XLHA 1WMRA 2X3HA 2NZMA 3SUCA 1QCXA 4YZQA 1IA5A 1O8LA 4OJLA 1OOCA 4PMHA 2NSPA 1HG8A 1XG2A 1RU4A 4OJ5A 5C1CA 5AMVA 4W8SA 2INUA 4NK8A 4XL9A
chains in the Genus database with same CATH superfamily
1KTWA 1O8DA 1HF2A 1X0CA 4XKVA 4Z06A 1EZGA 1OFLA 4HWVA 1RWRA 3H09A 5JLVC 1QA2A 1TYUA 1TYWA 4XN3A 2O17A 2F3LA 4OPWA 3SYJA 2Z8GA 1JRGA 1VBLA 2NTPA 1LLZA 5DNSA 1LLWA 4XMYA 3BH7B 2INVA 2O1DA 1QJVA 1CLWA 2O0VA 4XKWA 1GQ8A 4YC5A 1IB4A 1EA0A 5C1EA 2BX6A 4W8RA 4W8TA 3B90A 2VFQA 4XOTA 1QRBA 2NTBA 2ODLA 2XT2A 4MR0A 4XONA 3B8YA 2QYUA 4YDTA 3N6ZA 2UVEA 3VSVA 3PSSA 4XN0A 4YZXA 3JURA 3VMWA 1BN8A 4YEJA 3SZEA 4XLCA 4AVZA 3B4NA 4XOPA 3AK5A 4OZZA 2VFOA 4I84A 2UVFA 2PYHA 1KQ5A 1OFMA 4EW9A 2QXZA 1OGMX 1IDKA 1O8FA 1BHEA 4XORA 2XTXA 4YZ0A 2O6WA 2VBMA 2IQ7A 3GQ9A 4NK6A 4XLAA 3SY2A 1OFEA 1O8EA 2BM4A 3VMVA 3ZSCA 1O8IA 4YELA 1O8HA 2XTWA 2NT6A 2EWEA 4OM9A 2VJJA 3LJYA 2XTYA 1OFDA 4XNFA 1OGOX 1O88A 2O04A 4OZYA 1DBOA 3GQ7A 4YCQA 1TSPA 1O8GA 2QX3A 4KH3A 3FY3A 3EQNA 4U49A 2VFNA 2VJIA 2NT9A 1H80A 2X6WA 1QA1A 1QRCA 2X85A 4YFOA 2V5IA 1EE6A 2W7ZA 1K8FA 3VSUA 4XLFA 4XM3A 1IDJA 1NHCA 3NB2A 4YZAA 2VFPA 1QA3A 4OJ6A 2NSTA 1QQ1A 2X6YA 1L1IA 4Z03A 3VSTA 4XQFA 2B0RA 1O8MA 2BM7A 2BM5A 4XLEA 1O8JA 2VBKA 3P4GA 1KCDA 3KRGA 2QZAA 2QY1A 1PXZA 2O0WA 1TYXA 3TH0A 3EQOA 3LMWA 1DABA 4MXNA 4OJOA 3DU1X 3SQVA 2X6XA 2IOUG 4URRA 4Z05A 3WWGA 2PYGA 4U4BA 2G0YA 1K5CA 1KCCA 1AIRA 3GRHA 3RIQA 2BSPA 3GQ8A 3BH6B 1PE9A 1JTAA 2YUHA 3LYCA 2PECA 2VBEA 1K4ZA 4OJPA 2VFMA 1DBGA 3UW0A 1CZFA 5JMCB 3ZPPA 4W8QA 3NAWA 1O8KA 1RMGA 2NTQA 3GQAA 4JRAC 4XR6A 3T9GA 1PLUA 4C2LA 4XLHA 1WMRA 2X3HA 2NZMA 3SUCA 1QCXA 3N90A 4YZQA 1TYVA 1IA5A 1O8LA 3JX8A 3ML3A 1WXRA 4OJLA 1OOCA 2J8KA 4PMHA 2NSPA 4V02C 2J8IA 2XC1A 1HG8A 4YEIA 3PETA 1XG2A 1RU4A 4OJ5A 3PSZA 2XT4A 2BM6A 5AMVA 4W8SA 5C1CA 2INUA 4NK8A 1LM1A 4XL9A
chains in the Genus database with same CATH topology
1KTWA 1O8DA 1X0CA 4XKVA 4Z06A 1OFLA 4HWVA 1RWRA 4XN3A 2O17A 2Z8GA 1JRGA 1VBLA 2NTPA 4XMYA 2INVA 2O1DA 1QJVA 2O0VA 1IB4A 4XKWA 1GQ8A 5C1EA 4W8RA 4W8TA 3B90A 4XOTA 2NTBA 2ODLA 4MR0A 4XONA 3B8YA 2UVEA 3VSVA 4XN0A 4YZXA 3JURA 3VMWA 1BN8A 4YEJA 4XLCA 4AVZA 3B4NA 4XOPA 4OZZA 4I84A 2UVFA 2PYHA 1OFMA 4EW9A 2QXZA 1OGMX 1IDKA 1O8FA 1BHEA 4XORA 4YZ0A 2VBMA 2IQ7A 3GQ9A 4NK6A 4XLAA 1O8EA 3VMVA 3ZSCA 1O8IA 4YELA 1O8HA 2NT6A 2EWEA 2VJJA 4XNFA 1OGOX 1O88A 2O04A 4OZYA 1DBOA 3GQ7A 2QX3A 1O8GA 3FY3A 3EQNA 4U49A 2VJIA 2NT9A 1H80A 2X6WA 2X85A 3VSUA 1EE6A 4XLFA 4XM3A 1IDJA 1NHCA 4YZAA 4OJ6A 2NSTA 2X6YA 4Z03A 3VSTA 4XQFA 1O8MA 4XLEA 1O8JA 2VBKA 1KCDA 3KRGA 2QY1A 1PXZA 2O0WA 3EQOA 3LMWA 4MXNA 4OJOA 2X6XA 4Z05A 4URRA 3WWGA 1K5CA 2PYGA 4U4BA 1KCCA 1AIRA 3GRHA 2BSPA 3GQ8A 1PE9A 1JTAA 2PECA 2VBEA 4OJPA 1DBGA 3UW0A 1CZFA 3ZPPA 4W8QA 1O8KA 1RMGA 2NTQA 3GQAA 4XR6A 3T9GA 4C2LA 1PLUA 4XLHA 1WMRA 2X3HA 2NZMA 3SUCA 1QCXA 4YZQA 1IA5A 1O8LA 4OJLA 1OOCA 4PMHA 2NSPA 1HG8A 1XG2A 1RU4A 4OJ5A 5C1CA 5AMVA 4W8SA 2INUA 4NK8A 4XL9A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1KTW A;  1O8D A;  1X0C A;  4XKV A;  4Z06 A;  1OFL A;  4HWV A;  1RWR A;  4XN3 A;  2O17 A;  2Z8G A;  1JRG A;  1VBL A;  2NTP A;  4XMY A;  2INV A;  2O1D A;  1QJV A;  2O0V A;  1IB4 A;  4XKW A;  1GQ8 A;  5C1E A;  4W8R A;  4W8T A;  3B90 A;  4XOT A;  2NTB A;  2ODL A;  4MR0 A;  4XON A;  3B8Y A;  2UVE A;  3VSV A;  4XN0 A;  4YZX A;  3JUR A;  3VMW A;  1BN8 A;  4YEJ A;  4XLC A;  4AVZ A;  3B4N A;  4XOP A;  4OZZ A;  4I84 A;  2UVF A;  2PYH A;  1OFM A;  4EW9 A;  2QXZ A;  1OGM X;  1IDK A;  1O8F A;  1BHE A;  4XOR A;  4YZ0 A;  2VBM A;  2IQ7 A;  3GQ9 A;  4NK6 A;  4XLA A;  1O8E A;  3VMV A;  3ZSC A;  1O8I A;  4YEL A;  1O8H A;  2NT6 A;  2EWE A;  2VJJ A;  4XNF A;  1OGO X;  1O88 A;  2O04 A;  4OZY A;  1DBO A;  3GQ7 A;  2QX3 A;  1O8G A;  3FY3 A;  3EQN A;  4U49 A;  2VJI A;  2NT9 A;  1H80 A;  2X6W A;  2X85 A;  3VSU A;  1EE6 A;  4XLF A;  4XM3 A;  1IDJ A;  1NHC A;  4YZA A;  4OJ6 A;  2NST A;  2X6Y A;  4Z03 A;  3VST A;  4XQF A;  1O8M A;  4XLE A;  1O8J A;  2VBK A;  1KCD A;  3KRG A;  2QY1 A;  1PXZ A;  2O0W A;  3EQO A;  3LMW A;  4MXN A;  4OJO A;  2X6X A;  4Z05 A;  4URR A;  3WWG A;  1K5C A;  2PYG A;  4U4B A;  1KCC A;  1AIR A;  3GRH A;  2BSP A;  3GQ8 A;  1PE9 A;  1JTA A;  2PEC A;  2VBE A;  4OJP A;  1DBG A;  3UW0 A;  1CZF A;  3ZPP A;  4W8Q A;  1O8K A;  1RMG A;  2NTQ A;  3GQA A;  4XR6 A;  3T9G A;  4C2L A;  1PLU A;  4XLH A;  1WMR A;  2X3H A;  2NZM A;  3SUC A;  1QCX A;  4YZQ A;  1IA5 A;  1O8L A;  4OJL A;  1OOC A;  4PMH A;  2NSP A;  1HG8 A;  1XG2 A;  1RU4 A;  4OJ5 A;  5C1C A;  5AMV A;  4W8S A;  2INU A;  4NK8 A;  4XL9 A; 
#chains in the Genus database with same CATH topology
 1KTW A;  1O8D A;  1HF2 A;  1X0C A;  4XKV A;  4Z06 A;  1EZG A;  1OFL A;  4HWV A;  1RWR A;  3H09 A;  5JLV C;  1QA2 A;  1TYU A;  1TYW A;  4XN3 A;  2O17 A;  2F3L A;  4OPW A;  3SYJ A;  2Z8G A;  1JRG A;  1VBL A;  2NTP A;  1LLZ A;  5DNS A;  1LLW A;  4XMY A;  3BH7 B;  2INV A;  2O1D A;  1QJV A;  1CLW A;  2O0V A;  4XKW A;  1GQ8 A;  4YC5 A;  1IB4 A;  1EA0 A;  5C1E A;  2BX6 A;  4W8R A;  4W8T A;  3B90 A;  2VFQ A;  4XOT A;  1QRB A;  2NTB A;  2ODL A;  2XT2 A;  4MR0 A;  4XON A;  3B8Y A;  2QYU A;  4YDT A;  3N6Z A;  2UVE A;  3VSV A;  3PSS A;  4XN0 A;  4YZX A;  3JUR A;  3VMW A;  1BN8 A;  4YEJ A;  3SZE A;  4XLC A;  4AVZ A;  3B4N A;  4XOP A;  3AK5 A;  4OZZ A;  2VFO A;  4I84 A;  2UVF A;  2PYH A;  1KQ5 A;  1OFM A;  4EW9 A;  2QXZ A;  1OGM X;  1IDK A;  1O8F A;  1BHE A;  4XOR A;  2XTX A;  4YZ0 A;  2O6W A;  2VBM A;  2IQ7 A;  3GQ9 A;  4NK6 A;  4XLA A;  3SY2 A;  1OFE A;  1O8E A;  2BM4 A;  3VMV A;  3ZSC A;  1O8I A;  4YEL A;  1O8H A;  2XTW A;  2NT6 A;  2EWE A;  4OM9 A;  2VJJ A;  3LJY A;  2XTY A;  1OFD A;  4XNF A;  1OGO X;  1O88 A;  2O04 A;  4OZY A;  1DBO A;  3GQ7 A;  4YCQ A;  1TSP A;  1O8G A;  2QX3 A;  4KH3 A;  3FY3 A;  3EQN A;  4U49 A;  2VFN A;  2VJI A;  2NT9 A;  1H80 A;  2X6W A;  1QA1 A;  1QRC A;  2X85 A;  4YFO A;  2V5I A;  1EE6 A;  2W7Z A;  1K8F A;  3VSU A;  4XLF A;  4XM3 A;  1IDJ A;  1NHC A;  3NB2 A;  4YZA A;  2VFP A;  1QA3 A;  4OJ6 A;  2NST A;  1QQ1 A;  2X6Y A;  1L1I A;  4Z03 A;  3VST A;  4XQF A;  2B0R A;  1O8M A;  2BM7 A;  2BM5 A;  4XLE A;  1O8J A;  2VBK A;  3P4G A;  1KCD A;  3KRG A;  2QZA A;  2QY1 A;  1PXZ A;  2O0W A;  1TYX A;  3TH0 A;  3EQO A;  3LMW A;  1DAB A;  4MXN A;  4OJO A;  3DU1 X;  3SQV A;  2X6X A;  2IOU G;  4URR A;  4Z05 A;  3WWG A;  2PYG A;  4U4B A;  2G0Y A;  1K5C A;  1KCC A;  1AIR A;  3GRH A;  3RIQ A;  2BSP A;  3GQ8 A;  3BH6 B;  1PE9 A;  1JTA A;  2YUH A;  3LYC A;  2PEC A;  2VBE A;  1K4Z A;  4OJP A;  2VFM A;  1DBG A;  3UW0 A;  1CZF A;  5JMC B;  3ZPP A;  4W8Q A;  3NAW A;  1O8K A;  1RMG A;  2NTQ A;  3GQA A;  4JRA C;  4XR6 A;  3T9G A;  1PLU A;  4C2L A;  4XLH A;  1WMR A;  2X3H A;  2NZM A;  3SUC A;  1QCX A;  3N90 A;  4YZQ A;  1TYV A;  1IA5 A;  1O8L A;  3JX8 A;  3ML3 A;  1WXR A;  4OJL A;  1OOC A;  2J8K A;  4PMH A;  2NSP A;  4V02 C;  2J8I A;  2XC1 A;  1HG8 A;  4YEI A;  3PET A;  1XG2 A;  1RU4 A;  4OJ5 A;  3PSZ A;  2XT4 A;  2BM6 A;  5AMV A;  4W8S A;  5C1C A;  2INU A;  4NK8 A;  1LM1 A;  4XL9 A; 
#chains in the Genus database with same CATH homology
 1KTW A;  1O8D A;  1X0C A;  4XKV A;  4Z06 A;  1OFL A;  4HWV A;  1RWR A;  4XN3 A;  2O17 A;  2Z8G A;  1JRG A;  1VBL A;  2NTP A;  4XMY A;  2INV A;  2O1D A;  1QJV A;  2O0V A;  1IB4 A;  4XKW A;  1GQ8 A;  5C1E A;  4W8R A;  4W8T A;  3B90 A;  4XOT A;  2NTB A;  2ODL A;  4MR0 A;  4XON A;  3B8Y A;  2UVE A;  3VSV A;  4XN0 A;  4YZX A;  3JUR A;  3VMW A;  1BN8 A;  4YEJ A;  4XLC A;  4AVZ A;  3B4N A;  4XOP A;  4OZZ A;  4I84 A;  2UVF A;  2PYH A;  1OFM A;  4EW9 A;  2QXZ A;  1OGM X;  1IDK A;  1O8F A;  1BHE A;  4XOR A;  4YZ0 A;  2VBM A;  2IQ7 A;  3GQ9 A;  4NK6 A;  4XLA A;  1O8E A;  3VMV A;  3ZSC A;  1O8I A;  4YEL A;  1O8H A;  2NT6 A;  2EWE A;  2VJJ A;  4XNF A;  1OGO X;  1O88 A;  2O04 A;  4OZY A;  1DBO A;  3GQ7 A;  2QX3 A;  1O8G A;  3FY3 A;  3EQN A;  4U49 A;  2VJI A;  2NT9 A;  1H80 A;  2X6W A;  2X85 A;  3VSU A;  1EE6 A;  4XLF A;  4XM3 A;  1IDJ A;  1NHC A;  4YZA A;  4OJ6 A;  2NST A;  2X6Y A;  4Z03 A;  3VST A;  4XQF A;  1O8M A;  4XLE A;  1O8J A;  2VBK A;  1KCD A;  3KRG A;  2QY1 A;  1PXZ A;  2O0W A;  3EQO A;  3LMW A;  4MXN A;  4OJO A;  2X6X A;  4Z05 A;  4URR A;  3WWG A;  1K5C A;  2PYG A;  4U4B A;  1KCC A;  1AIR A;  3GRH A;  2BSP A;  3GQ8 A;  1PE9 A;  1JTA A;  2PEC A;  2VBE A;  4OJP A;  1DBG A;  3UW0 A;  1CZF A;  3ZPP A;  4W8Q A;  1O8K A;  1RMG A;  2NTQ A;  3GQA A;  4XR6 A;  3T9G A;  4C2L A;  1PLU A;  4XLH A;  1WMR A;  2X3H A;  2NZM A;  3SUC A;  1QCX A;  4YZQ A;  1IA5 A;  1O8L A;  4OJL A;  1OOC A;  4PMH A;  2NSP A;  1HG8 A;  1XG2 A;  1RU4 A;  4OJ5 A;  5C1C A;  5AMV A;  4W8S A;  2INU A;  4NK8 A;  4XL9 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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