2NZMA

Hexasaccharide i bound to bacillus subtilis pectate lyase
Total Genus 162
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
162
sequence length
399
structure length
399
Chain Sequence
ADLGHQTLGSNDGWGAYSTGTTGGSKASSSNVYTVSNRNQLVSALGKETNTTPKIIYIKGTIDMNVDDNLKPLGLNDYKDPEYDLDKYLKAYDPSTWGKKEPSGTQEEARARSQKNQKARVMVDIPANTTIVGSGTNAKVVGGNFQIKSDNVIIRNIEFQDAYDYFPQWDPTDGSSGNWNSQYDNITINGGTHIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITMSYNYYHDHDKSSIFGSSDSKTSDDGKLKITLHHNRYKNIVQAAPRVRFGQVHVYNNYYEGSTSSSSYPFSYAWGIGKSSKIYAQNNVIDVPGLSAAKTISVFSGGTALYDSGTLLNGTQINASAANGLSSSVGWTPSLHGSIDASANVKSNVINQAGAGKLN
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Pectate lyase
publication title Structural insights into substrate specificity and the anti beta-elimination mechanism of pectate lyase.
pubmed doi rcsb
source organism Bacillus subtilis
molecule tags Lyase
total genus 162
structure length 399
sequence length 399
ec nomenclature ec 4.2.2.2: Pectate lyase.
pdb deposition date 2006-11-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00544 Pec_lyase_C Pectate lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 2nzmA00
4YZQA 3GQ9A 3VMWA 4XM3A 4Z06A 3VSUA 1OOCA 4XLFA 1RU4A 4NK8A 1O8JA 1O8IA 4AVZA 4MR0A 2Z8GA 1O88A 2VBEA 2IQ7A 2NSPA 2ODLA 2BSPA 4C2LA 1RMGA 2UVFA 1GQ8A 4XKWA 1KCDA 1NHCA 2NSTA 4HWVA 5AMVA 2UVEA 4XL9A 1CZFA 1WMRA 2PYHA 2X6XA 1O8KA 3VSVA 4XONA 4PMHA 3ZPPA 4W8SA 4Z05A 3GQ8A 2INUA 2X6YA 4YELA 1JTAA 1PXZA 1OFMA 4W8RA 3SUCA 1DBOA 4OZZA 1OGMX 3WWGA 1EE6A 1O8MA 2QY1A 4Z03A 2X3HA 4XOTA 3B90A 5C1EA 1JRGA 1QJVA 2PECA 2INVA 2QX3A 2O1DA 4U4BA 1OFLA 1X0CA 3GRHA 4OZYA 1PLUA 4XOPA 4OJ5A 2NTQA 4U49A 2NT6A 1IDJA 5C1CA 4YZ0A 4YEJA 1VBLA 4XMYA 3EQOA 2X85A 1O8DA 2NTBA 3LMWA 1HG8A 3VSTA 4XORA 3ZSCA 3EQNA 1K5CA 1O8GA 1O8EA 3GQAA 3B8YA 1IDKA 2VJIA 3JURA 4URRA 4XNFA 4XLEA 1H80A 4XKVA 4W8TA 2NT9A 1BHEA 1OGOX 3VMVA 2QXZA 3FY3A 2O0VA 4XLAA 1IA5A 2X6WA 2O04A 4OJPA 2O17A 4OJOA 4NK6A 2PYGA 1O8HA 1RWRA 3GQ7A 1QCXA 4XN3A 1IB4A 2VJJA 4XR6A 1O8FA 1XG2A 2VBMA 4OJ6A 2VBKA 4YZXA 3UW0A 1DBGA 3B4NA 2EWEA 1KCCA 1O8LA 3KRGA 4I84A 4XN0A 2NTPA 4XLCA 4EW9A 4XQFA 1AIRA 2NZMA 4MXNA 4XLHA 4OJLA 1KTWA 1BN8A 1PE9A 2O0WA 4W8QA 3T9GA 4YZAA
chains in the Genus database with same CATH superfamily
4YZQA 2XC1A 3GQ9A 3SQVA 1LLZA 3VMWA 4XM3A 4Z06A 1LLWA 3VSUA 1WXRA 1OOCA 4XLFA 1RU4A 1OFDA 4NK8A 1O8JA 3BH6B 1O8IA 1DABA 4AVZA 4MR0A 2Z8GA 1O88A 2VBEA 2IQ7A 2NSPA 2ODLA 2BSPA 1TSPA 2YUHA 4C2LA 1RMGA 2UVFA 1EA0A 1GQ8A 4XKWA 1KCDA 1TYXA 3SY2A 1NHCA 2BM6A 2NSTA 4HWVA 2IOUG 5AMVA 3BH7B 3N6ZA 2UVEA 3JX8A 3ML3A 2VFQA 1CZFA 4XL9A 3PSZA 1WMRA 2F3LA 2PYHA 2X6XA 1O8KA 3VSVA 4XONA 2XTXA 4PMHA 2XTWA 2VFMA 3ZPPA 4W8SA 4Z05A 3GQ8A 1K8FA 2INUA 2J8KA 2VFPA 1QQ1A 2X6YA 3LYCA 4YELA 1JTAA 3PETA 4JRAC 1HF2A 1PXZA 1OFMA 4W8RA 2QYUA 3SUCA 1TYVA 1DBOA 4OZZA 5JLVC 1OGMX 1TYWA 1QA2A 2BX6A 3WWGA 1EE6A 3NB2A 1O8MA 2QY1A 4Z03A 2X3HA 4XOTA 3B90A 5C1EA 1CLWA 1JRGA 1QJVA 2INVA 2PECA 1QA3A 2QX3A 2O1DA 4U4BA 3SZEA 1OFLA 1X0CA 3GRHA 4OZYA 2BM5A 1KQ5A 1PLUA 4V02C 4XOPA 4OJ5A 3SYJA 4YDTA 1QRBA 2NTQA 4U49A 2NT6A 2XT2A 1IDJA 4OPWA 5C1CA 4YZ0A 4YEJA 1VBLA 2VFNA 4XMYA 3EQOA 3DU1X 2X85A 1O8DA 2NTBA 2BM4A 2O6WA 3LMWA 1HG8A 3VSTA 4XORA 3ZSCA 3EQNA 4YEIA 1K5CA 1O8GA 1O8EA 4YFOA 3GQAA 3B8YA 1IDKA 2VJIA 3TH0A 3JURA 1K4ZA 4URRA 4XNFA 3NAWA 4XLEA 1H80A 2QZAA 4W8TA 4XKVA 2XT4A 1QA1A 3P4GA 2NT9A 2BM7A 3AK5A 2G0YA 1BHEA 1EZGA 1OGOX 4YCQA 1TYUA 2V5IA 3VMVA 2QXZA 1OFEA 2O0VA 3FY3A 4XLAA 1IA5A 4KH3A 2X6WA 2O04A 4OJPA 2O17A 3H09A 4OJOA 4NK6A 2PYGA 1O8HA 1RWRA 3GQ7A 1QCXA 2J8IA 4XN3A 1IB4A 2VJJA 1LM1A 4XR6A 1O8FA 5DNSA 1XG2A 2VBMA 4OJ6A 2W7ZA 4OM9A 2VBKA 3PSSA 3N90A 4YZXA 3UW0A 2B0RA 1DBGA 3B4NA 1QRCA 2EWEA 1KCCA 3LJYA 1O8LA 3KRGA 4I84A 4XN0A 2NTPA 4XLCA 4YC5A 4EW9A 1AIRA 2NZMA 2XTYA 4XQFA 4MXNA 3RIQA 4XLHA 4OJLA 5JMCB 2VFOA 1KTWA 1BN8A 1PE9A 2O0WA 4W8QA 1L1IA 3T9GA 4YZAA
chains in the Genus database with same CATH topology
4YZQA 3GQ9A 3VMWA 4XM3A 4Z06A 3VSUA 1OOCA 4XLFA 1RU4A 4NK8A 1O8JA 1O8IA 4AVZA 4MR0A 2Z8GA 1O88A 2VBEA 2IQ7A 2NSPA 2ODLA 2BSPA 4C2LA 1RMGA 2UVFA 1GQ8A 4XKWA 1KCDA 1NHCA 2NSTA 4HWVA 5AMVA 2UVEA 4XL9A 1CZFA 1WMRA 2PYHA 2X6XA 1O8KA 3VSVA 4XONA 4PMHA 3ZPPA 4W8SA 4Z05A 3GQ8A 2INUA 2X6YA 4YELA 1JTAA 1PXZA 1OFMA 4W8RA 3SUCA 1DBOA 4OZZA 1OGMX 3WWGA 1EE6A 1O8MA 2QY1A 4Z03A 2X3HA 4XOTA 3B90A 5C1EA 1JRGA 1QJVA 2PECA 2INVA 2QX3A 2O1DA 4U4BA 1OFLA 1X0CA 3GRHA 4OZYA 1PLUA 4XOPA 4OJ5A 2NTQA 4U49A 2NT6A 1IDJA 5C1CA 4YZ0A 4YEJA 1VBLA 4XMYA 3EQOA 2X85A 1O8DA 2NTBA 3LMWA 1HG8A 3VSTA 4XORA 3ZSCA 3EQNA 1K5CA 1O8GA 1O8EA 3GQAA 3B8YA 1IDKA 2VJIA 3JURA 4URRA 4XNFA 4XLEA 1H80A 4XKVA 4W8TA 2NT9A 1BHEA 1OGOX 3VMVA 2QXZA 3FY3A 2O0VA 4XLAA 1IA5A 2X6WA 2O04A 4OJPA 2O17A 4OJOA 4NK6A 2PYGA 1O8HA 1RWRA 3GQ7A 1QCXA 4XN3A 1IB4A 2VJJA 4XR6A 1O8FA 1XG2A 2VBMA 4OJ6A 2VBKA 4YZXA 3UW0A 1DBGA 3B4NA 2EWEA 1KCCA 1O8LA 3KRGA 4I84A 4XN0A 2NTPA 4XLCA 4EW9A 4XQFA 1AIRA 2NZMA 4MXNA 4XLHA 4OJLA 1KTWA 1BN8A 1PE9A 2O0WA 4W8QA 3T9GA 4YZAA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4YZQ A;  3GQ9 A;  3VMW A;  4XM3 A;  4Z06 A;  3VSU A;  1OOC A;  4XLF A;  1RU4 A;  4NK8 A;  1O8J A;  1O8I A;  4AVZ A;  4MR0 A;  2Z8G A;  1O88 A;  2VBE A;  2IQ7 A;  2NSP A;  2ODL A;  2BSP A;  4C2L A;  1RMG A;  2UVF A;  1GQ8 A;  4XKW A;  1KCD A;  1NHC A;  2NST A;  4HWV A;  5AMV A;  2UVE A;  4XL9 A;  1CZF A;  1WMR A;  2PYH A;  2X6X A;  1O8K A;  3VSV A;  4XON A;  4PMH A;  3ZPP A;  4W8S A;  4Z05 A;  3GQ8 A;  2INU A;  2X6Y A;  4YEL A;  1JTA A;  1PXZ A;  1OFM A;  4W8R A;  3SUC A;  1DBO A;  4OZZ A;  1OGM X;  3WWG A;  1EE6 A;  1O8M A;  2QY1 A;  4Z03 A;  2X3H A;  4XOT A;  3B90 A;  5C1E A;  1JRG A;  1QJV A;  2PEC A;  2INV A;  2QX3 A;  2O1D A;  4U4B A;  1OFL A;  1X0C A;  3GRH A;  4OZY A;  1PLU A;  4XOP A;  4OJ5 A;  2NTQ A;  4U49 A;  2NT6 A;  1IDJ A;  5C1C A;  4YZ0 A;  4YEJ A;  1VBL A;  4XMY A;  3EQO A;  2X85 A;  1O8D A;  2NTB A;  3LMW A;  1HG8 A;  3VST A;  4XOR A;  3ZSC A;  3EQN A;  1K5C A;  1O8G A;  1O8E A;  3GQA A;  3B8Y A;  1IDK A;  2VJI A;  3JUR A;  4URR A;  4XNF A;  4XLE A;  1H80 A;  4XKV A;  4W8T A;  2NT9 A;  1BHE A;  1OGO X;  3VMV A;  2QXZ A;  3FY3 A;  2O0V A;  4XLA A;  1IA5 A;  2X6W A;  2O04 A;  4OJP A;  2O17 A;  4OJO A;  4NK6 A;  2PYG A;  1O8H A;  1RWR A;  3GQ7 A;  1QCX A;  4XN3 A;  1IB4 A;  2VJJ A;  4XR6 A;  1O8F A;  1XG2 A;  2VBM A;  4OJ6 A;  2VBK A;  4YZX A;  3UW0 A;  1DBG A;  3B4N A;  2EWE A;  1KCC A;  1O8L A;  3KRG A;  4I84 A;  4XN0 A;  2NTP A;  4XLC A;  4EW9 A;  4XQF A;  1AIR A;  2NZM A;  4MXN A;  4XLH A;  4OJL A;  1KTW A;  1BN8 A;  1PE9 A;  2O0W A;  4W8Q A;  3T9G A;  4YZA A; 
#chains in the Genus database with same CATH topology
 4YZQ A;  2XC1 A;  3GQ9 A;  3SQV A;  1LLZ A;  3VMW A;  4XM3 A;  4Z06 A;  1LLW A;  3VSU A;  1WXR A;  1OOC A;  4XLF A;  1RU4 A;  1OFD A;  4NK8 A;  1O8J A;  3BH6 B;  1O8I A;  1DAB A;  4AVZ A;  4MR0 A;  2Z8G A;  1O88 A;  2VBE A;  2IQ7 A;  2NSP A;  2ODL A;  2BSP A;  1TSP A;  2YUH A;  4C2L A;  1RMG A;  2UVF A;  1EA0 A;  1GQ8 A;  4XKW A;  1KCD A;  1TYX A;  3SY2 A;  1NHC A;  2BM6 A;  2NST A;  4HWV A;  2IOU G;  5AMV A;  3BH7 B;  3N6Z A;  2UVE A;  3JX8 A;  3ML3 A;  2VFQ A;  1CZF A;  4XL9 A;  3PSZ A;  1WMR A;  2F3L A;  2PYH A;  2X6X A;  1O8K A;  3VSV A;  4XON A;  2XTX A;  4PMH A;  2XTW A;  2VFM A;  3ZPP A;  4W8S A;  4Z05 A;  3GQ8 A;  1K8F A;  2INU A;  2J8K A;  2VFP A;  1QQ1 A;  2X6Y A;  3LYC A;  4YEL A;  1JTA A;  3PET A;  4JRA C;  1HF2 A;  1PXZ A;  1OFM A;  4W8R A;  2QYU A;  3SUC A;  1TYV A;  1DBO A;  4OZZ A;  5JLV C;  1OGM X;  1TYW A;  1QA2 A;  2BX6 A;  3WWG A;  1EE6 A;  3NB2 A;  1O8M A;  2QY1 A;  4Z03 A;  2X3H A;  4XOT A;  3B90 A;  5C1E A;  1CLW A;  1JRG A;  1QJV A;  2INV A;  2PEC A;  1QA3 A;  2QX3 A;  2O1D A;  4U4B A;  3SZE A;  1OFL A;  1X0C A;  3GRH A;  4OZY A;  2BM5 A;  1KQ5 A;  1PLU A;  4V02 C;  4XOP A;  4OJ5 A;  3SYJ A;  4YDT A;  1QRB A;  2NTQ A;  4U49 A;  2NT6 A;  2XT2 A;  1IDJ A;  4OPW A;  5C1C A;  4YZ0 A;  4YEJ A;  1VBL A;  2VFN A;  4XMY A;  3EQO A;  3DU1 X;  2X85 A;  1O8D A;  2NTB A;  2BM4 A;  2O6W A;  3LMW A;  1HG8 A;  3VST A;  4XOR A;  3ZSC A;  3EQN A;  4YEI A;  1K5C A;  1O8G A;  1O8E A;  4YFO A;  3GQA A;  3B8Y A;  1IDK A;  2VJI A;  3TH0 A;  3JUR A;  1K4Z A;  4URR A;  4XNF A;  3NAW A;  4XLE A;  1H80 A;  2QZA A;  4W8T A;  4XKV A;  2XT4 A;  1QA1 A;  3P4G A;  2NT9 A;  2BM7 A;  3AK5 A;  2G0Y A;  1BHE A;  1EZG A;  1OGO X;  4YCQ A;  1TYU A;  2V5I A;  3VMV A;  2QXZ A;  1OFE A;  2O0V A;  3FY3 A;  4XLA A;  1IA5 A;  4KH3 A;  2X6W A;  2O04 A;  4OJP A;  2O17 A;  3H09 A;  4OJO A;  4NK6 A;  2PYG A;  1O8H A;  1RWR A;  3GQ7 A;  1QCX A;  2J8I A;  4XN3 A;  1IB4 A;  2VJJ A;  1LM1 A;  4XR6 A;  1O8F A;  5DNS A;  1XG2 A;  2VBM A;  4OJ6 A;  2W7Z A;  4OM9 A;  2VBK A;  3PSS A;  3N90 A;  4YZX A;  3UW0 A;  2B0R A;  1DBG A;  3B4N A;  1QRC A;  2EWE A;  1KCC A;  3LJY A;  1O8L A;  3KRG A;  4I84 A;  4XN0 A;  2NTP A;  4XLC A;  4YC5 A;  4EW9 A;  1AIR A;  2NZM A;  2XTY A;  4XQF A;  4MXN A;  3RIQ A;  4XLH A;  4OJL A;  5JMC B;  2VFO A;  1KTW A;  1BN8 A;  1PE9 A;  2O0W A;  4W8Q A;  1L1I A;  3T9G A;  4YZA A; 
#chains in the Genus database with same CATH homology
 4YZQ A;  3GQ9 A;  3VMW A;  4XM3 A;  4Z06 A;  3VSU A;  1OOC A;  4XLF A;  1RU4 A;  4NK8 A;  1O8J A;  1O8I A;  4AVZ A;  4MR0 A;  2Z8G A;  1O88 A;  2VBE A;  2IQ7 A;  2NSP A;  2ODL A;  2BSP A;  4C2L A;  1RMG A;  2UVF A;  1GQ8 A;  4XKW A;  1KCD A;  1NHC A;  2NST A;  4HWV A;  5AMV A;  2UVE A;  4XL9 A;  1CZF A;  1WMR A;  2PYH A;  2X6X A;  1O8K A;  3VSV A;  4XON A;  4PMH A;  3ZPP A;  4W8S A;  4Z05 A;  3GQ8 A;  2INU A;  2X6Y A;  4YEL A;  1JTA A;  1PXZ A;  1OFM A;  4W8R A;  3SUC A;  1DBO A;  4OZZ A;  1OGM X;  3WWG A;  1EE6 A;  1O8M A;  2QY1 A;  4Z03 A;  2X3H A;  4XOT A;  3B90 A;  5C1E A;  1JRG A;  1QJV A;  2PEC A;  2INV A;  2QX3 A;  2O1D A;  4U4B A;  1OFL A;  1X0C A;  3GRH A;  4OZY A;  1PLU A;  4XOP A;  4OJ5 A;  2NTQ A;  4U49 A;  2NT6 A;  1IDJ A;  5C1C A;  4YZ0 A;  4YEJ A;  1VBL A;  4XMY A;  3EQO A;  2X85 A;  1O8D A;  2NTB A;  3LMW A;  1HG8 A;  3VST A;  4XOR A;  3ZSC A;  3EQN A;  1K5C A;  1O8G A;  1O8E A;  3GQA A;  3B8Y A;  1IDK A;  2VJI A;  3JUR A;  4URR A;  4XNF A;  4XLE A;  1H80 A;  4XKV A;  4W8T A;  2NT9 A;  1BHE A;  1OGO X;  3VMV A;  2QXZ A;  3FY3 A;  2O0V A;  4XLA A;  1IA5 A;  2X6W A;  2O04 A;  4OJP A;  2O17 A;  4OJO A;  4NK6 A;  2PYG A;  1O8H A;  1RWR A;  3GQ7 A;  1QCX A;  4XN3 A;  1IB4 A;  2VJJ A;  4XR6 A;  1O8F A;  1XG2 A;  2VBM A;  4OJ6 A;  2VBK A;  4YZX A;  3UW0 A;  1DBG A;  3B4N A;  2EWE A;  1KCC A;  1O8L A;  3KRG A;  4I84 A;  4XN0 A;  2NTP A;  4XLC A;  4EW9 A;  4XQF A;  1AIR A;  2NZM A;  4MXN A;  4XLH A;  4OJL A;  1KTW A;  1BN8 A;  1PE9 A;  2O0W A;  4W8Q A;  3T9G A;  4YZA A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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