2O17A

Pectate lyase bound to hexasaccharide
Total Genus 153
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
153
sequence length
399
structure length
399
Chain Sequence
ADLGHQTLGSNDGWGAYSTGTTGGSKASSSNVYTVSNRNQLVSALGKETNTTPKIIYIKGTIDMNVDDNLKPLGLNDYKDPEYDLDKYLKAYDPSTWGKKEPSGTQEEARARSQKNQKARVMVDIPANTTIVGSGTNAKVVGGNFQIKSDNVIIRNIEFQDAYDYFPQWDPTDGSSGNWNSQYDNITINGGTHIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITMSYNYYHDHDKSSIFGSSDSKTSDDGKLKITLHHNRYKNIVQAAPRVRFGQVHVYNNYYEGSTSSSSYPFSYAWGIGKSSKIYAQNNVIDVPGLSAAKTISVFSGGTALYDSGTLLNGTQINASAANGLSSSVGWTPSLHGSIDASANVKSNVINQAGAGKLN
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Structural insights into substrate specificity and the anti beta-elimination mechanism of pectate lyase.
pubmed doi rcsb
source organism Bacillus subtilis
molecule tags Lyase
molecule keywords Pectate lyase
total genus 153
structure length 399
sequence length 399
ec nomenclature ec 4.2.2.2: Pectate lyase.
pdb deposition date 2006-11-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00544 Pec_lyase_C Pectate lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 2o17A00
1AIRA 1DBOA 1PLUA 3EQOA 4XL9A 3VMWA 2VBEA 1IDJA 2O04A 1K5CA 2PYHA 4I84A 2UVEA 4OJPA 4YZXA 4XOPA 2X6XA 3B90A 3FY3A 1KCDA 1QCXA 1QJVA 1O8DA 4XOTA 1EE6A 4XLFA 3T9GA 1IA5A 4U49A 1RWRA 4NK6A 4U4BA 3GQ8A 4W8SA 2O17A 2O0VA 4XLEA 1WMRA 1OFMA 1CZFA 1O8LA 3VSUA 2BSPA 4AVZA 3VSTA 3EQNA 2PECA 4W8QA 2NZMA 3GRHA 2VBKA 4OJLA 2IQ7A 5C1EA 2UVFA 1JTAA 4XN3A 4XN0A 4YZQA 2NTBA 2NT9A 4MR0A 4OZZA 3B4NA 2PYGA 3UW0A 1OOCA 4XNFA 1OGMX 2VJJA 2VJIA 2NTQA 2NTPA 2QY1A 1OFLA 3VSVA 2QX3A 5AMVA 4XR6A 2QXZA 4EW9A 1H80A 4XM3A 1O8GA 1O8KA 2X6WA 2NSTA 3GQ7A 4XKVA 4YZAA 1OGOX 3GQAA 1RU4A 1RMGA 4Z03A 3JURA 2O1DA 4YELA 1O8MA 2VBMA 3ZSCA 1O8HA 4Z06A 4XQFA 2X6YA 1BHEA 4OZYA 4XONA 4XLCA 1KTWA 1PXZA 2NSPA 1JRGA 4W8TA 4YEJA 2INUA 1O8IA 4XKWA 5C1CA 1O8FA 3SUCA 1IB4A 1HG8A 4PMHA 4HWVA 3VMVA 3KRGA 3ZPPA 4OJOA 4YZ0A 1BN8A 4Z05A 4W8RA 3LMWA 1VBLA 3WWGA 4URRA 4C2LA 4MXNA 1X0CA 4NK8A 4OJ5A 1O8EA 1PE9A 1XG2A 2EWEA 3B8YA 4XLAA 1GQ8A 2X3HA 3GQ9A 1O88A 4XLHA 2O0WA 1IDKA 4XMYA 4XORA 1KCCA 2Z8GA 2NT6A 2INVA 2ODLA 2X85A 4OJ6A 1O8JA 1DBGA 1NHCA
chains in the Genus database with same CATH superfamily
1AIRA 1WXRA 1DBOA 1HF2A 1PLUA 3EQOA 4XL9A 3VMWA 2VBEA 1IDJA 2O04A 1K5CA 3PETA 2PYHA 4I84A 2UVEA 4OJPA 4YZXA 4XOPA 1QA2A 2X6XA 3B90A 3FY3A 1KCDA 1QCXA 1QJVA 1O8DA 4XOTA 1EE6A 3JX8A 3N6ZA 4XLFA 3T9GA 1IA5A 2J8IA 4U49A 1RWRA 1L1IA 4NK6A 4U4BA 5JLVC 3GQ8A 4W8SA 2O17A 2O0VA 4XLEA 1WMRA 1OFMA 1K4ZA 1CZFA 2VFOA 1O8LA 2VFMA 4JRAC 3VSUA 2BSPA 4AVZA 3VSTA 1LLZA 2PECA 3EQNA 4YEIA 4W8QA 2NZMA 3GRHA 2VBKA 4KH3A 1QRCA 4OJLA 1K8FA 2IQ7A 5C1EA 1QA1A 2UVFA 1JTAA 2XT4A 4XN3A 4XN0A 4YZQA 4YFOA 2NTBA 2NT9A 2VFQA 4MR0A 3SQVA 4OZZA 2XC1A 3BH7B 1DABA 1TYUA 3B4NA 1TYXA 2PYGA 3UW0A 1OOCA 3LYCA 4XNFA 1OGMX 2O6WA 2VJJA 2NTQA 2VJIA 2NTPA 2QY1A 1LLWA 1OFLA 1TYVA 2VFPA 3VSVA 2QX3A 3NB2A 5AMVA 2QZAA 4XR6A 1KQ5A 2QXZA 4EW9A 2F3LA 5JMCB 3N90A 4YDTA 1OFEA 3NAWA 1H80A 4XM3A 1O8GA 1O8KA 4YCQA 1TSPA 2X6WA 2NSTA 3GQ7A 4XKVA 4YZAA 1OGOX 1QQ1A 3GQAA 4V02C 1RU4A 1RMGA 4Z03A 1LM1A 3JURA 2O1DA 3RIQA 2BM4A 1O8MA 2VBMA 4YELA 3DU1X 3ZSCA 3SZEA 1CLWA 1EZGA 2XTXA 4OM9A 1O8HA 2XT2A 3SYJA 1EA0A 4Z06A 4XQFA 3BH6B 3PSSA 2W7ZA 1BHEA 2X6YA 4OZYA 4XONA 4XLCA 1KTWA 1PXZA 2NSPA 1JRGA 3PSZA 4W8TA 4YEJA 2INUA 3ML3A 5DNSA 1O8IA 4XKWA 5C1CA 1O8FA 3SUCA 1IB4A 1HG8A 4PMHA 4HWVA 3VMVA 3KRGA 3ZPPA 2J8KA 2YUHA 4OJOA 4YZ0A 2BM7A 1BN8A 4Z05A 1TYWA 4W8RA 3LMWA 1VBLA 1OFDA 3LJYA 3WWGA 4URRA 3P4GA 4C2LA 2BX6A 4MXNA 1X0CA 4NK8A 4OPWA 4OJ5A 1O8EA 1PE9A 1XG2A 3H09A 2EWEA 2IOUG 3B8YA 1QA3A 4XLAA 2XTWA 4YC5A 1GQ8A 2X3HA 2V5IA 3GQ9A 1O88A 2B0RA 2XTYA 4XLHA 2G0YA 2O0WA 1IDKA 4XMYA 4XORA 1KCCA 2Z8GA 2NT6A 2INVA 2VFNA 1QRBA 3SY2A 2ODLA 2X85A 4OJ6A 2QYUA 3TH0A 1O8JA 3AK5A 2BM5A 2BM6A 1DBGA 1NHCA
chains in the Genus database with same CATH topology
1AIRA 1DBOA 1PLUA 3EQOA 4XL9A 3VMWA 2VBEA 1IDJA 2O04A 1K5CA 2PYHA 4I84A 2UVEA 4OJPA 4YZXA 4XOPA 2X6XA 3B90A 3FY3A 1KCDA 1QCXA 1QJVA 1O8DA 4XOTA 1EE6A 4XLFA 3T9GA 1IA5A 4U49A 1RWRA 4NK6A 4U4BA 3GQ8A 4W8SA 2O17A 2O0VA 4XLEA 1WMRA 1OFMA 1CZFA 1O8LA 3VSUA 2BSPA 4AVZA 3VSTA 3EQNA 2PECA 4W8QA 2NZMA 3GRHA 2VBKA 4OJLA 2IQ7A 5C1EA 2UVFA 1JTAA 4XN3A 4XN0A 4YZQA 2NTBA 2NT9A 4MR0A 4OZZA 3B4NA 2PYGA 3UW0A 1OOCA 4XNFA 1OGMX 2VJJA 2VJIA 2NTQA 2NTPA 2QY1A 1OFLA 3VSVA 2QX3A 5AMVA 4XR6A 2QXZA 4EW9A 1H80A 4XM3A 1O8GA 1O8KA 2X6WA 2NSTA 3GQ7A 4XKVA 4YZAA 1OGOX 3GQAA 1RU4A 1RMGA 4Z03A 3JURA 2O1DA 4YELA 1O8MA 2VBMA 3ZSCA 1O8HA 4Z06A 4XQFA 2X6YA 1BHEA 4OZYA 4XONA 4XLCA 1KTWA 1PXZA 2NSPA 1JRGA 4W8TA 4YEJA 2INUA 1O8IA 4XKWA 5C1CA 1O8FA 3SUCA 1IB4A 1HG8A 4PMHA 4HWVA 3VMVA 3KRGA 3ZPPA 4OJOA 4YZ0A 1BN8A 4Z05A 4W8RA 3LMWA 1VBLA 3WWGA 4URRA 4C2LA 4MXNA 1X0CA 4NK8A 4OJ5A 1O8EA 1PE9A 1XG2A 2EWEA 3B8YA 4XLAA 1GQ8A 2X3HA 3GQ9A 1O88A 4XLHA 2O0WA 1IDKA 4XMYA 4XORA 1KCCA 2Z8GA 2NT6A 2INVA 2ODLA 2X85A 4OJ6A 1O8JA 1DBGA 1NHCA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1AIR A;  1DBO A;  1PLU A;  3EQO A;  4XL9 A;  3VMW A;  2VBE A;  1IDJ A;  2O04 A;  1K5C A;  2PYH A;  4I84 A;  2UVE A;  4OJP A;  4YZX A;  4XOP A;  2X6X A;  3B90 A;  3FY3 A;  1KCD A;  1QCX A;  1QJV A;  1O8D A;  4XOT A;  1EE6 A;  4XLF A;  3T9G A;  1IA5 A;  4U49 A;  1RWR A;  4NK6 A;  4U4B A;  3GQ8 A;  4W8S A;  2O17 A;  2O0V A;  4XLE A;  1WMR A;  1OFM A;  1CZF A;  1O8L A;  3VSU A;  2BSP A;  4AVZ A;  3VST A;  3EQN A;  2PEC A;  4W8Q A;  2NZM A;  3GRH A;  2VBK A;  4OJL A;  2IQ7 A;  5C1E A;  2UVF A;  1JTA A;  4XN3 A;  4XN0 A;  4YZQ A;  2NTB A;  2NT9 A;  4MR0 A;  4OZZ A;  3B4N A;  2PYG A;  3UW0 A;  1OOC A;  4XNF A;  1OGM X;  2VJJ A;  2VJI A;  2NTQ A;  2NTP A;  2QY1 A;  1OFL A;  3VSV A;  2QX3 A;  5AMV A;  4XR6 A;  2QXZ A;  4EW9 A;  1H80 A;  4XM3 A;  1O8G A;  1O8K A;  2X6W A;  2NST A;  3GQ7 A;  4XKV A;  4YZA A;  1OGO X;  3GQA A;  1RU4 A;  1RMG A;  4Z03 A;  3JUR A;  2O1D A;  4YEL A;  1O8M A;  2VBM A;  3ZSC A;  1O8H A;  4Z06 A;  4XQF A;  2X6Y A;  1BHE A;  4OZY A;  4XON A;  4XLC A;  1KTW A;  1PXZ A;  2NSP A;  1JRG A;  4W8T A;  4YEJ A;  2INU A;  1O8I A;  4XKW A;  5C1C A;  1O8F A;  3SUC A;  1IB4 A;  1HG8 A;  4PMH A;  4HWV A;  3VMV A;  3KRG A;  3ZPP A;  4OJO A;  4YZ0 A;  1BN8 A;  4Z05 A;  4W8R A;  3LMW A;  1VBL A;  3WWG A;  4URR A;  4C2L A;  4MXN A;  1X0C A;  4NK8 A;  4OJ5 A;  1O8E A;  1PE9 A;  1XG2 A;  2EWE A;  3B8Y A;  4XLA A;  1GQ8 A;  2X3H A;  3GQ9 A;  1O88 A;  4XLH A;  2O0W A;  1IDK A;  4XMY A;  4XOR A;  1KCC A;  2Z8G A;  2NT6 A;  2INV A;  2ODL A;  2X85 A;  4OJ6 A;  1O8J A;  1DBG A;  1NHC A; 
#chains in the Genus database with same CATH topology
 1AIR A;  1WXR A;  1DBO A;  1HF2 A;  1PLU A;  3EQO A;  4XL9 A;  3VMW A;  2VBE A;  1IDJ A;  2O04 A;  1K5C A;  3PET A;  2PYH A;  4I84 A;  2UVE A;  4OJP A;  4YZX A;  4XOP A;  1QA2 A;  2X6X A;  3B90 A;  3FY3 A;  1KCD A;  1QCX A;  1QJV A;  1O8D A;  4XOT A;  1EE6 A;  3JX8 A;  3N6Z A;  4XLF A;  3T9G A;  1IA5 A;  2J8I A;  4U49 A;  1RWR A;  1L1I A;  4NK6 A;  4U4B A;  5JLV C;  3GQ8 A;  4W8S A;  2O17 A;  2O0V A;  4XLE A;  1WMR A;  1OFM A;  1K4Z A;  1CZF A;  2VFO A;  1O8L A;  2VFM A;  4JRA C;  3VSU A;  2BSP A;  4AVZ A;  3VST A;  1LLZ A;  2PEC A;  3EQN A;  4YEI A;  4W8Q A;  2NZM A;  3GRH A;  2VBK A;  4KH3 A;  1QRC A;  4OJL A;  1K8F A;  2IQ7 A;  5C1E A;  1QA1 A;  2UVF A;  1JTA A;  2XT4 A;  4XN3 A;  4XN0 A;  4YZQ A;  4YFO A;  2NTB A;  2NT9 A;  2VFQ A;  4MR0 A;  3SQV A;  4OZZ A;  2XC1 A;  3BH7 B;  1DAB A;  1TYU A;  3B4N A;  1TYX A;  2PYG A;  3UW0 A;  1OOC A;  3LYC A;  4XNF A;  1OGM X;  2O6W A;  2VJJ A;  2NTQ A;  2VJI A;  2NTP A;  2QY1 A;  1LLW A;  1OFL A;  1TYV A;  2VFP A;  3VSV A;  2QX3 A;  3NB2 A;  5AMV A;  2QZA A;  4XR6 A;  1KQ5 A;  2QXZ A;  4EW9 A;  2F3L A;  5JMC B;  3N90 A;  4YDT A;  1OFE A;  3NAW A;  1H80 A;  4XM3 A;  1O8G A;  1O8K A;  4YCQ A;  1TSP A;  2X6W A;  2NST A;  3GQ7 A;  4XKV A;  4YZA A;  1OGO X;  1QQ1 A;  3GQA A;  4V02 C;  1RU4 A;  1RMG A;  4Z03 A;  1LM1 A;  3JUR A;  2O1D A;  3RIQ A;  2BM4 A;  1O8M A;  2VBM A;  4YEL A;  3DU1 X;  3ZSC A;  3SZE A;  1CLW A;  1EZG A;  2XTX A;  4OM9 A;  1O8H A;  2XT2 A;  3SYJ A;  1EA0 A;  4Z06 A;  4XQF A;  3BH6 B;  3PSS A;  2W7Z A;  1BHE A;  2X6Y A;  4OZY A;  4XON A;  4XLC A;  1KTW A;  1PXZ A;  2NSP A;  1JRG A;  3PSZ A;  4W8T A;  4YEJ A;  2INU A;  3ML3 A;  5DNS A;  1O8I A;  4XKW A;  5C1C A;  1O8F A;  3SUC A;  1IB4 A;  1HG8 A;  4PMH A;  4HWV A;  3VMV A;  3KRG A;  3ZPP A;  2J8K A;  2YUH A;  4OJO A;  4YZ0 A;  2BM7 A;  1BN8 A;  4Z05 A;  1TYW A;  4W8R A;  3LMW A;  1VBL A;  1OFD A;  3LJY A;  3WWG A;  4URR A;  3P4G A;  4C2L A;  2BX6 A;  4MXN A;  1X0C A;  4NK8 A;  4OPW A;  4OJ5 A;  1O8E A;  1PE9 A;  1XG2 A;  3H09 A;  2EWE A;  2IOU G;  3B8Y A;  1QA3 A;  4XLA A;  2XTW A;  4YC5 A;  1GQ8 A;  2X3H A;  2V5I A;  3GQ9 A;  1O88 A;  2B0R A;  2XTY A;  4XLH A;  2G0Y A;  2O0W A;  1IDK A;  4XMY A;  4XOR A;  1KCC A;  2Z8G A;  2NT6 A;  2INV A;  2VFN A;  1QRB A;  3SY2 A;  2ODL A;  2X85 A;  4OJ6 A;  2QYU A;  3TH0 A;  1O8J A;  3AK5 A;  2BM5 A;  2BM6 A;  1DBG A;  1NHC A; 
#chains in the Genus database with same CATH homology
 1AIR A;  1DBO A;  1PLU A;  3EQO A;  4XL9 A;  3VMW A;  2VBE A;  1IDJ A;  2O04 A;  1K5C A;  2PYH A;  4I84 A;  2UVE A;  4OJP A;  4YZX A;  4XOP A;  2X6X A;  3B90 A;  3FY3 A;  1KCD A;  1QCX A;  1QJV A;  1O8D A;  4XOT A;  1EE6 A;  4XLF A;  3T9G A;  1IA5 A;  4U49 A;  1RWR A;  4NK6 A;  4U4B A;  3GQ8 A;  4W8S A;  2O17 A;  2O0V A;  4XLE A;  1WMR A;  1OFM A;  1CZF A;  1O8L A;  3VSU A;  2BSP A;  4AVZ A;  3VST A;  3EQN A;  2PEC A;  4W8Q A;  2NZM A;  3GRH A;  2VBK A;  4OJL A;  2IQ7 A;  5C1E A;  2UVF A;  1JTA A;  4XN3 A;  4XN0 A;  4YZQ A;  2NTB A;  2NT9 A;  4MR0 A;  4OZZ A;  3B4N A;  2PYG A;  3UW0 A;  1OOC A;  4XNF A;  1OGM X;  2VJJ A;  2VJI A;  2NTQ A;  2NTP A;  2QY1 A;  1OFL A;  3VSV A;  2QX3 A;  5AMV A;  4XR6 A;  2QXZ A;  4EW9 A;  1H80 A;  4XM3 A;  1O8G A;  1O8K A;  2X6W A;  2NST A;  3GQ7 A;  4XKV A;  4YZA A;  1OGO X;  3GQA A;  1RU4 A;  1RMG A;  4Z03 A;  3JUR A;  2O1D A;  4YEL A;  1O8M A;  2VBM A;  3ZSC A;  1O8H A;  4Z06 A;  4XQF A;  2X6Y A;  1BHE A;  4OZY A;  4XON A;  4XLC A;  1KTW A;  1PXZ A;  2NSP A;  1JRG A;  4W8T A;  4YEJ A;  2INU A;  1O8I A;  4XKW A;  5C1C A;  1O8F A;  3SUC A;  1IB4 A;  1HG8 A;  4PMH A;  4HWV A;  3VMV A;  3KRG A;  3ZPP A;  4OJO A;  4YZ0 A;  1BN8 A;  4Z05 A;  4W8R A;  3LMW A;  1VBL A;  3WWG A;  4URR A;  4C2L A;  4MXN A;  1X0C A;  4NK8 A;  4OJ5 A;  1O8E A;  1PE9 A;  1XG2 A;  2EWE A;  3B8Y A;  4XLA A;  1GQ8 A;  2X3H A;  3GQ9 A;  1O88 A;  4XLH A;  2O0W A;  1IDK A;  4XMY A;  4XOR A;  1KCC A;  2Z8G A;  2NT6 A;  2INV A;  2ODL A;  2X85 A;  4OJ6 A;  1O8J A;  1DBG A;  1NHC A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...