2O17A

Pectate lyase bound to hexasaccharide
Total Genus 153
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
153
sequence length
399
structure length
399
Chain Sequence
b'ADLGHQTLGSNDGWGAYSTGTTGGSKASSSNVYTVSNRNQLVSALGKETNTTPKIIYIKGTIDMNVDDNLKPLGLNDYKDPEYDLDKYLKAYDPSTWGKKEPSGTQEEARARSQKNQKARVMVDIPANTTIVGSGTNAKVVGGNFQIKSDNVIIRNIEFQDAYDYFPQWDPTDGSSGNWNSQYDNITINGGTHIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITMSYNYYHDHDKSSIFGSSDSKTSDDGKLKITLHHNRYKNIVQAAPRVRFGQVHVYNNYYEGSTSSSSYPFSYAWGIGKSSKIYAQNNVIDVPGLSAAKTISVFSGGTALYDSGTLLNGTQINASAANGLSSSVGWTPSLHGSIDASANVKSNVINQAGAGKLN'
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Structural insights into substrate specificity and the anti beta-elimination mechanism of pectate lyase.
pubmed doi rcsb
molecule keywords Pectate lyase
source organism Bacillus subtilis
molecule tags Lyase
total genus 153
structure length 399
sequence length 399
ec nomenclature ec 4.2.2.2: Pectate lyase.
pdb deposition date 2006-11-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00544 Pec_lyase_C Pectate lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 2o17A00
1O8GA 2NTBA 4YZQA 4U4BA 1IA5A 1O8FA 2ODLA 2O0VA 3B8YA 2O0WA 4W8RA 2PECA 4XKWA 3KRGA 4Z05A 1GQ8A 1JRGA 4U49A 3VMWA 1RMGA 4NK8A 5C1EA 2UVFA 3VMVA 1O8EA 2NSTA 3VSTA 1K5CA 4Z06A 1DBOA 3EQOA 4XKVA 2VBEA 3B90A 2NTQA 4EW9A 1NHCA 2PYHA 1BN8A 2QY1A 3JURA 3WWGA 1AIRA 2O1DA 1XG2A 4XOTA 2BSPA 1QCXA 2UVEA 1WMRA 4XORA 3EQNA 1IB4A 1DBGA 3VSVA 2O17A 3VSUA 3ZSCA 1O8LA 2X6WA 1O8JA 2NT9A 1BHEA 1O8DA 1KTWA 4YZXA 2VJIA 4OJ5A 1O8KA 4C2LA 1OOCA 2QX3A 1HG8A 4PMHA 4OZYA 1IDKA 4URRA 1OFLA 1PXZA 4YZ0A 1O8HA 4MR0A 4XONA 1EE6A 2EWEA 2IQ7A 3GQ7A 4YELA 1CZFA 4XMYA 4XR6A 3GQ8A 2O04A 4OJ6A 4XLHA 1KCCA 4XL9A 1PE9A 3GQ9A 4XNFA 5C1CA 1O88A 3LMWA 1H80A 1QJVA 4OJPA 4W8QA 1PLUA 3B4NA 1O8IA 4HWVA 4XLFA 1KCDA 4AVZA 5AMVA 4OJLA 2NSPA 4XQFA 4YEJA 4XOPA 4MXNA 2Z8GA 4OJOA 4NK6A 4XM3A 2INVA 4YZAA 4XLEA 4XLCA 2VBKA 1IDJA 4OZZA 2NTPA 1X0CA 4XLAA 2INUA 4W8TA 1OFMA 1JTAA 2VJJA 3SUCA 4XN3A 2X6YA 3ZPPA 2NT6A 1O8MA 2X6XA 2PYGA 2NZMA 3FY3A 4I84A 3GRHA 1OGOX 3GQAA 2X85A 1RU4A 4XN0A 3UW0A 4Z03A 4W8SA 1OGMX 2QXZA 1RWRA 1VBLA 2VBMA 3T9GA 2X3HA
chains in the Genus database with same CATH superfamily
1K4ZA 3N6ZA 1O8GA 2NTBA 1QA1A 2BM5A 1QA2A 4YZQA 4U4BA 1IA5A 3ML3A 1O8FA 2ODLA 1K8FA 2O0VA 2VFPA 3B8YA 2XTXA 1WXRA 2O0WA 3NB2A 2PECA 4W8RA 3KRGA 4XKWA 1GQ8A 1JRGA 4U49A 4Z05A 3TH0A 3VMWA 2VFOA 3DU1X 1RMGA 4NK8A 5C1EA 2UVFA 3VMVA 1O8EA 2NSTA 3VSTA 1DABA 2IOUG 1QQ1A 1QRBA 4Z06A 2B0RA 1K5CA 1DBOA 3EQOA 4XKVA 4KH3A 2VBEA 3B90A 2NTQA 3SQVA 4EW9A 1NHCA 2PYHA 1BN8A 2J8KA 3PSSA 2QY1A 3JURA 1LLZA 1AIRA 2YUHA 3N90A 3WWGA 2W7ZA 2BM6A 2O1DA 2QYUA 1XG2A 4XOTA 2BSPA 1QCXA 2J8IA 2UVEA 4YCQA 2BM7A 1WMRA 1TYXA 4XORA 3EQNA 1IB4A 1DBGA 3VSVA 1OFEA 2O17A 4YDTA 4YFOA 3VSUA 3ZSCA 1O8LA 2X6WA 1O8JA 2NT9A 1BHEA 1O8DA 1HF2A 1LLWA 1KTWA 1TYUA 2O6WA 4YC5A 4YZXA 2VJIA 4OJ5A 4OM9A 1O8KA 1QA3A 4C2LA 1OOCA 2QX3A 1HG8A 4PMHA 4OZYA 1IDKA 4URRA 1OFLA 2QZAA 2XTWA 1PXZA 4YZ0A 1O8HA 4MR0A 4XONA 2IQ7A 1EE6A 2EWEA 3BH6B 3GQ7A 1KQ5A 3LJYA 3AK5A 4YELA 1CZFA 4XMYA 4XR6A 3GQ8A 2O04A 4OJ6A 4XLHA 1KCCA 4XL9A 1PE9A 3GQ9A 4XNFA 2XT4A 1LM1A 5C1CA 1O88A 3LMWA 3BH7B 1H80A 1QJVA 2G0YA 2XTYA 3NAWA 4OJPA 1PLUA 4W8QA 3B4NA 1CLWA 1O8IA 4HWVA 4XLFA 1KCDA 4AVZA 5AMVA 4OJLA 2NSPA 1OFDA 4XQFA 4YEJA 2VFNA 2VFMA 4JRAC 3PSZA 4XOPA 4MXNA 1L1IA 2Z8GA 4OJOA 4NK6A 4XM3A 2INVA 4YZAA 4OPWA 4XLEA 4V02C 4XLCA 2VFQA 2VBKA 3H09A 1IDJA 4OZZA 2NTPA 1X0CA 4XLAA 2BX6A 5JMCB 1TYWA 2INUA 3PETA 4W8TA 1EZGA 1OFMA 1JTAA 2BM4A 2VJJA 3P4GA 3SUCA 4XN3A 2X6YA 3ZPPA 2NT6A 1O8MA 1TSPA 2X6XA 1QRCA 2XT2A 3LYCA 2PYGA 2V5IA 3SZEA 3RIQA 5JLVC 2NZMA 3FY3A 4I84A 3GRHA 1EA0A 3SY2A 1OGOX 3GQAA 2X85A 1RU4A 4XN0A 3UW0A 5DNSA 3SYJA 4Z03A 4W8SA 1OGMX 2QXZA 1TYVA 1RWRA 2XC1A 1VBLA 4YEIA 2F3LA 3JX8A 2VBMA 3T9GA 2X3HA
chains in the Genus database with same CATH topology
1O8GA 2NTBA 4YZQA 4U4BA 1IA5A 1O8FA 2ODLA 2O0VA 3B8YA 2O0WA 4W8RA 2PECA 4XKWA 3KRGA 4Z05A 1GQ8A 1JRGA 4U49A 3VMWA 1RMGA 4NK8A 5C1EA 2UVFA 3VMVA 1O8EA 2NSTA 3VSTA 1K5CA 4Z06A 1DBOA 3EQOA 4XKVA 2VBEA 3B90A 2NTQA 4EW9A 1NHCA 2PYHA 1BN8A 2QY1A 3JURA 3WWGA 1AIRA 2O1DA 1XG2A 4XOTA 2BSPA 1QCXA 2UVEA 1WMRA 4XORA 3EQNA 1IB4A 1DBGA 3VSVA 2O17A 3VSUA 3ZSCA 1O8LA 2X6WA 1O8JA 2NT9A 1BHEA 1O8DA 1KTWA 4YZXA 2VJIA 4OJ5A 1O8KA 4C2LA 1OOCA 2QX3A 1HG8A 4PMHA 4OZYA 1IDKA 4URRA 1OFLA 1PXZA 4YZ0A 1O8HA 4MR0A 4XONA 1EE6A 2EWEA 2IQ7A 3GQ7A 4YELA 1CZFA 4XMYA 4XR6A 3GQ8A 2O04A 4OJ6A 4XLHA 1KCCA 4XL9A 1PE9A 3GQ9A 4XNFA 5C1CA 1O88A 3LMWA 1H80A 1QJVA 4OJPA 4W8QA 1PLUA 3B4NA 1O8IA 4HWVA 4XLFA 1KCDA 4AVZA 5AMVA 4OJLA 2NSPA 4XQFA 4YEJA 4XOPA 4MXNA 2Z8GA 4OJOA 4NK6A 4XM3A 2INVA 4YZAA 4XLEA 4XLCA 2VBKA 1IDJA 4OZZA 2NTPA 1X0CA 4XLAA 2INUA 4W8TA 1OFMA 1JTAA 2VJJA 3SUCA 4XN3A 2X6YA 3ZPPA 2NT6A 1O8MA 2X6XA 2PYGA 2NZMA 3FY3A 4I84A 3GRHA 1OGOX 3GQAA 2X85A 1RU4A 4XN0A 3UW0A 4Z03A 4W8SA 1OGMX 2QXZA 1RWRA 1VBLA 2VBMA 3T9GA 2X3HA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1O8G A;  2NTB A;  4YZQ A;  4U4B A;  1IA5 A;  1O8F A;  2ODL A;  2O0V A;  3B8Y A;  2O0W A;  4W8R A;  2PEC A;  4XKW A;  3KRG A;  4Z05 A;  1GQ8 A;  1JRG A;  4U49 A;  3VMW A;  1RMG A;  4NK8 A;  5C1E A;  2UVF A;  3VMV A;  1O8E A;  2NST A;  3VST A;  1K5C A;  4Z06 A;  1DBO A;  3EQO A;  4XKV A;  2VBE A;  3B90 A;  2NTQ A;  4EW9 A;  1NHC A;  2PYH A;  1BN8 A;  2QY1 A;  3JUR A;  3WWG A;  1AIR A;  2O1D A;  1XG2 A;  4XOT A;  2BSP A;  1QCX A;  2UVE A;  1WMR A;  4XOR A;  3EQN A;  1IB4 A;  1DBG A;  3VSV A;  2O17 A;  3VSU A;  3ZSC A;  1O8L A;  2X6W A;  1O8J A;  2NT9 A;  1BHE A;  1O8D A;  1KTW A;  4YZX A;  2VJI A;  4OJ5 A;  1O8K A;  4C2L A;  1OOC A;  2QX3 A;  1HG8 A;  4PMH A;  4OZY A;  1IDK A;  4URR A;  1OFL A;  1PXZ A;  4YZ0 A;  1O8H A;  4MR0 A;  4XON A;  1EE6 A;  2EWE A;  2IQ7 A;  3GQ7 A;  4YEL A;  1CZF A;  4XMY A;  4XR6 A;  3GQ8 A;  2O04 A;  4OJ6 A;  4XLH A;  1KCC A;  4XL9 A;  1PE9 A;  3GQ9 A;  4XNF A;  5C1C A;  1O88 A;  3LMW A;  1H80 A;  1QJV A;  4OJP A;  4W8Q A;  1PLU A;  3B4N A;  1O8I A;  4HWV A;  4XLF A;  1KCD A;  4AVZ A;  5AMV A;  4OJL A;  2NSP A;  4XQF A;  4YEJ A;  4XOP A;  4MXN A;  2Z8G A;  4OJO A;  4NK6 A;  4XM3 A;  2INV A;  4YZA A;  4XLE A;  4XLC A;  2VBK A;  1IDJ A;  4OZZ A;  2NTP A;  1X0C A;  4XLA A;  2INU A;  4W8T A;  1OFM A;  1JTA A;  2VJJ A;  3SUC A;  4XN3 A;  2X6Y A;  3ZPP A;  2NT6 A;  1O8M A;  2X6X A;  2PYG A;  2NZM A;  3FY3 A;  4I84 A;  3GRH A;  1OGO X;  3GQA A;  2X85 A;  1RU4 A;  4XN0 A;  3UW0 A;  4Z03 A;  4W8S A;  1OGM X;  2QXZ A;  1RWR A;  1VBL A;  2VBM A;  3T9G A;  2X3H A; 
#chains in the Genus database with same CATH topology
 1K4Z A;  3N6Z A;  1O8G A;  2NTB A;  1QA1 A;  2BM5 A;  1QA2 A;  4YZQ A;  4U4B A;  1IA5 A;  3ML3 A;  1O8F A;  2ODL A;  1K8F A;  2O0V A;  2VFP A;  3B8Y A;  2XTX A;  1WXR A;  2O0W A;  3NB2 A;  2PEC A;  4W8R A;  3KRG A;  4XKW A;  1GQ8 A;  1JRG A;  4U49 A;  4Z05 A;  3TH0 A;  3VMW A;  2VFO A;  3DU1 X;  1RMG A;  4NK8 A;  5C1E A;  2UVF A;  3VMV A;  1O8E A;  2NST A;  3VST A;  1DAB A;  2IOU G;  1QQ1 A;  1QRB A;  4Z06 A;  2B0R A;  1K5C A;  1DBO A;  3EQO A;  4XKV A;  4KH3 A;  2VBE A;  3B90 A;  2NTQ A;  3SQV A;  4EW9 A;  1NHC A;  2PYH A;  1BN8 A;  2J8K A;  3PSS A;  2QY1 A;  3JUR A;  1LLZ A;  1AIR A;  2YUH A;  3N90 A;  3WWG A;  2W7Z A;  2BM6 A;  2O1D A;  2QYU A;  1XG2 A;  4XOT A;  2BSP A;  1QCX A;  2J8I A;  2UVE A;  4YCQ A;  2BM7 A;  1WMR A;  1TYX A;  4XOR A;  3EQN A;  1IB4 A;  1DBG A;  3VSV A;  1OFE A;  2O17 A;  4YDT A;  4YFO A;  3VSU A;  3ZSC A;  1O8L A;  2X6W A;  1O8J A;  2NT9 A;  1BHE A;  1O8D A;  1HF2 A;  1LLW A;  1KTW A;  1TYU A;  2O6W A;  4YC5 A;  4YZX A;  2VJI A;  4OJ5 A;  4OM9 A;  1O8K A;  1QA3 A;  4C2L A;  1OOC A;  2QX3 A;  1HG8 A;  4PMH A;  4OZY A;  1IDK A;  4URR A;  1OFL A;  2QZA A;  2XTW A;  1PXZ A;  4YZ0 A;  1O8H A;  4MR0 A;  4XON A;  2IQ7 A;  1EE6 A;  2EWE A;  3BH6 B;  3GQ7 A;  1KQ5 A;  3LJY A;  3AK5 A;  4YEL A;  1CZF A;  4XMY A;  4XR6 A;  3GQ8 A;  2O04 A;  4OJ6 A;  4XLH A;  1KCC A;  4XL9 A;  1PE9 A;  3GQ9 A;  4XNF A;  2XT4 A;  1LM1 A;  5C1C A;  1O88 A;  3LMW A;  3BH7 B;  1H80 A;  1QJV A;  2G0Y A;  2XTY A;  3NAW A;  4OJP A;  1PLU A;  4W8Q A;  3B4N A;  1CLW A;  1O8I A;  4HWV A;  4XLF A;  1KCD A;  4AVZ A;  5AMV A;  4OJL A;  2NSP A;  1OFD A;  4XQF A;  4YEJ A;  2VFN A;  2VFM A;  4JRA C;  3PSZ A;  4XOP A;  4MXN A;  1L1I A;  2Z8G A;  4OJO A;  4NK6 A;  4XM3 A;  2INV A;  4YZA A;  4OPW A;  4XLE A;  4V02 C;  4XLC A;  2VFQ A;  2VBK A;  3H09 A;  1IDJ A;  4OZZ A;  2NTP A;  1X0C A;  4XLA A;  2BX6 A;  5JMC B;  1TYW A;  2INU A;  3PET A;  4W8T A;  1EZG A;  1OFM A;  1JTA A;  2BM4 A;  2VJJ A;  3P4G A;  3SUC A;  4XN3 A;  2X6Y A;  3ZPP A;  2NT6 A;  1O8M A;  1TSP A;  2X6X A;  1QRC A;  2XT2 A;  3LYC A;  2PYG A;  2V5I A;  3SZE A;  3RIQ A;  5JLV C;  2NZM A;  3FY3 A;  4I84 A;  3GRH A;  1EA0 A;  3SY2 A;  1OGO X;  3GQA A;  2X85 A;  1RU4 A;  4XN0 A;  3UW0 A;  5DNS A;  3SYJ A;  4Z03 A;  4W8S A;  1OGM X;  2QXZ A;  1TYV A;  1RWR A;  2XC1 A;  1VBL A;  4YEI A;  2F3L A;  3JX8 A;  2VBM A;  3T9G A;  2X3H A; 
#chains in the Genus database with same CATH homology
 1O8G A;  2NTB A;  4YZQ A;  4U4B A;  1IA5 A;  1O8F A;  2ODL A;  2O0V A;  3B8Y A;  2O0W A;  4W8R A;  2PEC A;  4XKW A;  3KRG A;  4Z05 A;  1GQ8 A;  1JRG A;  4U49 A;  3VMW A;  1RMG A;  4NK8 A;  5C1E A;  2UVF A;  3VMV A;  1O8E A;  2NST A;  3VST A;  1K5C A;  4Z06 A;  1DBO A;  3EQO A;  4XKV A;  2VBE A;  3B90 A;  2NTQ A;  4EW9 A;  1NHC A;  2PYH A;  1BN8 A;  2QY1 A;  3JUR A;  3WWG A;  1AIR A;  2O1D A;  1XG2 A;  4XOT A;  2BSP A;  1QCX A;  2UVE A;  1WMR A;  4XOR A;  3EQN A;  1IB4 A;  1DBG A;  3VSV A;  2O17 A;  3VSU A;  3ZSC A;  1O8L A;  2X6W A;  1O8J A;  2NT9 A;  1BHE A;  1O8D A;  1KTW A;  4YZX A;  2VJI A;  4OJ5 A;  1O8K A;  4C2L A;  1OOC A;  2QX3 A;  1HG8 A;  4PMH A;  4OZY A;  1IDK A;  4URR A;  1OFL A;  1PXZ A;  4YZ0 A;  1O8H A;  4MR0 A;  4XON A;  1EE6 A;  2EWE A;  2IQ7 A;  3GQ7 A;  4YEL A;  1CZF A;  4XMY A;  4XR6 A;  3GQ8 A;  2O04 A;  4OJ6 A;  4XLH A;  1KCC A;  4XL9 A;  1PE9 A;  3GQ9 A;  4XNF A;  5C1C A;  1O88 A;  3LMW A;  1H80 A;  1QJV A;  4OJP A;  4W8Q A;  1PLU A;  3B4N A;  1O8I A;  4HWV A;  4XLF A;  1KCD A;  4AVZ A;  5AMV A;  4OJL A;  2NSP A;  4XQF A;  4YEJ A;  4XOP A;  4MXN A;  2Z8G A;  4OJO A;  4NK6 A;  4XM3 A;  2INV A;  4YZA A;  4XLE A;  4XLC A;  2VBK A;  1IDJ A;  4OZZ A;  2NTP A;  1X0C A;  4XLA A;  2INU A;  4W8T A;  1OFM A;  1JTA A;  2VJJ A;  3SUC A;  4XN3 A;  2X6Y A;  3ZPP A;  2NT6 A;  1O8M A;  2X6X A;  2PYG A;  2NZM A;  3FY3 A;  4I84 A;  3GRH A;  1OGO X;  3GQA A;  2X85 A;  1RU4 A;  4XN0 A;  3UW0 A;  4Z03 A;  4W8S A;  1OGM X;  2QXZ A;  1RWR A;  1VBL A;  2VBM A;  3T9G A;  2X3H A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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