2O17A

Pectate lyase bound to hexasaccharide
Total Genus 153
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
153
sequence length
399
structure length
399
Chain Sequence
ADLGHQTLGSNDGWGAYSTGTTGGSKASSSNVYTVSNRNQLVSALGKETNTTPKIIYIKGTIDMNVDDNLKPLGLNDYKDPEYDLDKYLKAYDPSTWGKKEPSGTQEEARARSQKNQKARVMVDIPANTTIVGSGTNAKVVGGNFQIKSDNVIIRNIEFQDAYDYFPQWDPTDGSSGNWNSQYDNITINGGTHIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITMSYNYYHDHDKSSIFGSSDSKTSDDGKLKITLHHNRYKNIVQAAPRVRFGQVHVYNNYYEGSTSSSSYPFSYAWGIGKSSKIYAQNNVIDVPGLSAAKTISVFSGGTALYDSGTLLNGTQINASAANGLSSSVGWTPSLHGSIDASANVKSNVINQAGAGKLN
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Pectate lyase
publication title Structural insights into substrate specificity and the anti beta-elimination mechanism of pectate lyase.
pubmed doi rcsb
source organism Bacillus subtilis
molecule tags Lyase
total genus 153
structure length 399
sequence length 399
ec nomenclature ec 4.2.2.2: Pectate lyase.
pdb deposition date 2006-11-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00544 Pec_lyase_C Pectate lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 2o17A00
4XN0A 4YZAA 2INUA 2UVFA 4NK8A 1O8GA 4XN3A 4W8QA 5C1EA 2VJJA 1DBOA 4XR6A 1O8KA 2QXZA 2O0VA 4MXNA 3GQ7A 4OJ5A 2VBMA 3FY3A 4OJPA 1KCDA 3VSVA 4AVZA 1WMRA 1CZFA 2NTPA 4OJ6A 1O8EA 4XLAA 1PE9A 2X6YA 1KCCA 1DBGA 4XQFA 1OFLA 1H80A 1EE6A 4XL9A 3GQ9A 4XOPA 1OGOX 3ZPPA 3B90A 2VBEA 2NSPA 1O8FA 4YZ0A 1AIRA 1QCXA 1JRGA 3ZSCA 2ODLA 4XNFA 4U4BA 1PXZA 4OZYA 4OJLA 1RMGA 3GQAA 1GQ8A 2IQ7A 1OFMA 3KRGA 3B8YA 2NSTA 2Z8GA 1O8DA 3VMVA 3VSUA 1K5CA 2BSPA 4W8TA 4XONA 4YZQA 4XMYA 1NHCA 2NZMA 3SUCA 2X85A 4EW9A 3GRHA 2PYHA 4XLEA 1O8HA 4XLFA 3VSTA 1BN8A 2X6XA 4XM3A 4YEJA 2O0WA 1BHEA 3LMWA 2INVA 2X3HA 2PYGA 4XLCA 1X0CA 3UW0A 1HG8A 1JTAA 1RU4A 4Z05A 4XKVA 1O8MA 4OJOA 1XG2A 3EQOA 2NT6A 2QX3A 4PMHA 3VMWA 2O1DA 2O04A 3WWGA 2VBKA 1QJVA 3EQNA 1O8JA 4I84A 4NK6A 2QY1A 4W8SA 2X6WA 3JURA 1IA5A 4XKWA 3GQ8A 1O8LA 3T9GA 5C1CA 4MR0A 1RWRA 1O8IA 2NT9A 4Z06A 2NTBA 2O17A 1O88A 4YZXA 1IB4A 2PECA 1PLUA 3B4NA 5AMVA 4OZZA 4Z03A 1KTWA 4W8RA 1OGMX 4XLHA 1IDJA 4YELA 1IDKA 4U49A 2NTQA 4HWVA 4URRA 2UVEA 4XOTA 1VBLA 1OOCA 4C2LA 2VJIA 4XORA 2EWEA
chains in the Genus database with same CATH superfamily
1QQ1A 4XN0A 2INUA 4YZAA 2BM7A 2UVFA 4NK8A 1EZGA 1O8GA 1TYXA 4W8QA 4XN3A 5C1EA 1QA2A 2VJJA 1DBOA 4XR6A 1O8KA 3LYCA 1QRCA 3H09A 2QXZA 2O0VA 2XT2A 4V02C 4MXNA 2XC1A 3GQ7A 2VBMA 2VFQA 3FY3A 4OJ5A 4OJPA 1KCDA 3VSVA 3SZEA 1TYUA 4AVZA 1WMRA 4KH3A 2VFMA 3BH6B 2BM4A 1CZFA 2NTPA 4OJ6A 2O6WA 1O8EA 2V5IA 1PE9A 4XLAA 4YCQA 2X6YA 1KCCA 1DBGA 4XQFA 1OFLA 1H80A 1EA0A 1EE6A 4XL9A 3BH7B 3GQ9A 4XOPA 1OGOX 3ZPPA 3B90A 2VBEA 4YDTA 2NSPA 1HF2A 1O8FA 4YZ0A 1AIRA 1QCXA 1JRGA 1LLWA 2G0YA 3ZSCA 2ODLA 3LJYA 4U4BA 4XNFA 1PXZA 2W7ZA 4OZYA 4OJLA 1RMGA 3DU1X 3GQAA 1GQ8A 1OFDA 2IQ7A 1OFMA 3KRGA 3B8YA 2NSTA 2Z8GA 1KQ5A 1O8DA 3VMVA 3VSUA 1K5CA 1QRBA 2BSPA 4W8TA 2VFNA 4XONA 5DNSA 2QZAA 4YZQA 3JX8A 4XMYA 1NHCA 2NZMA 2XTXA 3NB2A 2IOUG 3SUCA 2X85A 4EW9A 2VFPA 3GRHA 3SQVA 2PYHA 4XLEA 1O8HA 4XLFA 2J8IA 3VSTA 2BX6A 1BN8A 2X6XA 4XM3A 4YEJA 1OFEA 2O0WA 1BHEA 3LMWA 1DABA 3N90A 2INVA 2VFOA 2X3HA 2PYGA 4XLCA 1X0CA 3UW0A 1LLZA 2XTYA 3PSSA 1HG8A 1K8FA 1JTAA 1RU4A 4Z05A 4XKVA 1O8MA 4OJOA 1XG2A 3EQOA 2NT6A 2QX3A 4PMHA 2XTWA 2J8KA 2O1DA 2O04A 1K4ZA 3VMWA 3WWGA 1LM1A 2VBKA 1QJVA 3EQNA 1O8JA 1QA1A 4I84A 4JRAC 4NK6A 4YC5A 3SYJA 2QY1A 4W8SA 2X6WA 1QA3A 3JURA 2F3LA 4YEIA 1IA5A 4XKWA 3GQ8A 1O8LA 3PSZA 3T9GA 5C1CA 4MR0A 5JMCB 3N6ZA 3SY2A 2BM6A 1RWRA 1O8IA 2NT9A 2YUHA 3PETA 3NAWA 1CLWA 4Z06A 2QYUA 2NTBA 2O17A 3TH0A 1O88A 5JLVC 2XT4A 4YZXA 1IB4A 1TYVA 1TYWA 2PECA 1PLUA 3B4NA 5AMVA 3ML3A 4OZZA 4Z03A 1KTWA 3AK5A 4W8RA 4YFOA 1WXRA 1TSPA 1OGMX 4XLHA 3RIQA 1IDJA 4YELA 1IDKA 2BM5A 4OPWA 4U49A 2NTQA 4HWVA 4URRA 2UVEA 2B0RA 4OM9A 4XOTA 1VBLA 1OOCA 3P4GA 4C2LA 1L1IA 2VJIA 4XORA 2EWEA
chains in the Genus database with same CATH topology
4XN0A 4YZAA 2INUA 2UVFA 4NK8A 1O8GA 4XN3A 4W8QA 5C1EA 2VJJA 1DBOA 4XR6A 1O8KA 2QXZA 2O0VA 4MXNA 3GQ7A 4OJ5A 2VBMA 3FY3A 4OJPA 1KCDA 3VSVA 4AVZA 1WMRA 1CZFA 2NTPA 4OJ6A 1O8EA 4XLAA 1PE9A 2X6YA 1KCCA 1DBGA 4XQFA 1OFLA 1H80A 1EE6A 4XL9A 3GQ9A 4XOPA 1OGOX 3ZPPA 3B90A 2VBEA 2NSPA 1O8FA 4YZ0A 1AIRA 1QCXA 1JRGA 3ZSCA 2ODLA 4XNFA 4U4BA 1PXZA 4OZYA 4OJLA 1RMGA 3GQAA 1GQ8A 2IQ7A 1OFMA 3KRGA 3B8YA 2NSTA 2Z8GA 1O8DA 3VMVA 3VSUA 1K5CA 2BSPA 4W8TA 4XONA 4YZQA 4XMYA 1NHCA 2NZMA 3SUCA 2X85A 4EW9A 3GRHA 2PYHA 4XLEA 1O8HA 4XLFA 3VSTA 1BN8A 2X6XA 4XM3A 4YEJA 2O0WA 1BHEA 3LMWA 2INVA 2X3HA 2PYGA 4XLCA 1X0CA 3UW0A 1HG8A 1JTAA 1RU4A 4Z05A 4XKVA 1O8MA 4OJOA 1XG2A 3EQOA 2NT6A 2QX3A 4PMHA 3VMWA 2O1DA 2O04A 3WWGA 2VBKA 1QJVA 3EQNA 1O8JA 4I84A 4NK6A 2QY1A 4W8SA 2X6WA 3JURA 1IA5A 4XKWA 3GQ8A 1O8LA 3T9GA 5C1CA 4MR0A 1RWRA 1O8IA 2NT9A 4Z06A 2NTBA 2O17A 1O88A 4YZXA 1IB4A 2PECA 1PLUA 3B4NA 5AMVA 4OZZA 4Z03A 1KTWA 4W8RA 1OGMX 4XLHA 1IDJA 4YELA 1IDKA 4U49A 2NTQA 4HWVA 4URRA 2UVEA 4XOTA 1VBLA 1OOCA 4C2LA 2VJIA 4XORA 2EWEA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4XN0 A;  4YZA A;  2INU A;  2UVF A;  4NK8 A;  1O8G A;  4XN3 A;  4W8Q A;  5C1E A;  2VJJ A;  1DBO A;  4XR6 A;  1O8K A;  2QXZ A;  2O0V A;  4MXN A;  3GQ7 A;  4OJ5 A;  2VBM A;  3FY3 A;  4OJP A;  1KCD A;  3VSV A;  4AVZ A;  1WMR A;  1CZF A;  2NTP A;  4OJ6 A;  1O8E A;  4XLA A;  1PE9 A;  2X6Y A;  1KCC A;  1DBG A;  4XQF A;  1OFL A;  1H80 A;  1EE6 A;  4XL9 A;  3GQ9 A;  4XOP A;  1OGO X;  3ZPP A;  3B90 A;  2VBE A;  2NSP A;  1O8F A;  4YZ0 A;  1AIR A;  1QCX A;  1JRG A;  3ZSC A;  2ODL A;  4XNF A;  4U4B A;  1PXZ A;  4OZY A;  4OJL A;  1RMG A;  3GQA A;  1GQ8 A;  2IQ7 A;  1OFM A;  3KRG A;  3B8Y A;  2NST A;  2Z8G A;  1O8D A;  3VMV A;  3VSU A;  1K5C A;  2BSP A;  4W8T A;  4XON A;  4YZQ A;  4XMY A;  1NHC A;  2NZM A;  3SUC A;  2X85 A;  4EW9 A;  3GRH A;  2PYH A;  4XLE A;  1O8H A;  4XLF A;  3VST A;  1BN8 A;  2X6X A;  4XM3 A;  4YEJ A;  2O0W A;  1BHE A;  3LMW A;  2INV A;  2X3H A;  2PYG A;  4XLC A;  1X0C A;  3UW0 A;  1HG8 A;  1JTA A;  1RU4 A;  4Z05 A;  4XKV A;  1O8M A;  4OJO A;  1XG2 A;  3EQO A;  2NT6 A;  2QX3 A;  4PMH A;  3VMW A;  2O1D A;  2O04 A;  3WWG A;  2VBK A;  1QJV A;  3EQN A;  1O8J A;  4I84 A;  4NK6 A;  2QY1 A;  4W8S A;  2X6W A;  3JUR A;  1IA5 A;  4XKW A;  3GQ8 A;  1O8L A;  3T9G A;  5C1C A;  4MR0 A;  1RWR A;  1O8I A;  2NT9 A;  4Z06 A;  2NTB A;  2O17 A;  1O88 A;  4YZX A;  1IB4 A;  2PEC A;  1PLU A;  3B4N A;  5AMV A;  4OZZ A;  4Z03 A;  1KTW A;  4W8R A;  1OGM X;  4XLH A;  1IDJ A;  4YEL A;  1IDK A;  4U49 A;  2NTQ A;  4HWV A;  4URR A;  2UVE A;  4XOT A;  1VBL A;  1OOC A;  4C2L A;  2VJI A;  4XOR A;  2EWE A; 
#chains in the Genus database with same CATH topology
 1QQ1 A;  4XN0 A;  2INU A;  4YZA A;  2BM7 A;  2UVF A;  4NK8 A;  1EZG A;  1O8G A;  1TYX A;  4W8Q A;  4XN3 A;  5C1E A;  1QA2 A;  2VJJ A;  1DBO A;  4XR6 A;  1O8K A;  3LYC A;  1QRC A;  3H09 A;  2QXZ A;  2O0V A;  2XT2 A;  4V02 C;  4MXN A;  2XC1 A;  3GQ7 A;  2VBM A;  2VFQ A;  3FY3 A;  4OJ5 A;  4OJP A;  1KCD A;  3VSV A;  3SZE A;  1TYU A;  4AVZ A;  1WMR A;  4KH3 A;  2VFM A;  3BH6 B;  2BM4 A;  1CZF A;  2NTP A;  4OJ6 A;  2O6W A;  1O8E A;  2V5I A;  1PE9 A;  4XLA A;  4YCQ A;  2X6Y A;  1KCC A;  1DBG A;  4XQF A;  1OFL A;  1H80 A;  1EA0 A;  1EE6 A;  4XL9 A;  3BH7 B;  3GQ9 A;  4XOP A;  1OGO X;  3ZPP A;  3B90 A;  2VBE A;  4YDT A;  2NSP A;  1HF2 A;  1O8F A;  4YZ0 A;  1AIR A;  1QCX A;  1JRG A;  1LLW A;  2G0Y A;  3ZSC A;  2ODL A;  3LJY A;  4U4B A;  4XNF A;  1PXZ A;  2W7Z A;  4OZY A;  4OJL A;  1RMG A;  3DU1 X;  3GQA A;  1GQ8 A;  1OFD A;  2IQ7 A;  1OFM A;  3KRG A;  3B8Y A;  2NST A;  2Z8G A;  1KQ5 A;  1O8D A;  3VMV A;  3VSU A;  1K5C A;  1QRB A;  2BSP A;  4W8T A;  2VFN A;  4XON A;  5DNS A;  2QZA A;  4YZQ A;  3JX8 A;  4XMY A;  1NHC A;  2NZM A;  2XTX A;  3NB2 A;  2IOU G;  3SUC A;  2X85 A;  4EW9 A;  2VFP A;  3GRH A;  3SQV A;  2PYH A;  4XLE A;  1O8H A;  4XLF A;  2J8I A;  3VST A;  2BX6 A;  1BN8 A;  2X6X A;  4XM3 A;  4YEJ A;  1OFE A;  2O0W A;  1BHE A;  3LMW A;  1DAB A;  3N90 A;  2INV A;  2VFO A;  2X3H A;  2PYG A;  4XLC A;  1X0C A;  3UW0 A;  1LLZ A;  2XTY A;  3PSS A;  1HG8 A;  1K8F A;  1JTA A;  1RU4 A;  4Z05 A;  4XKV A;  1O8M A;  4OJO A;  1XG2 A;  3EQO A;  2NT6 A;  2QX3 A;  4PMH A;  2XTW A;  2J8K A;  2O1D A;  2O04 A;  1K4Z A;  3VMW A;  3WWG A;  1LM1 A;  2VBK A;  1QJV A;  3EQN A;  1O8J A;  1QA1 A;  4I84 A;  4JRA C;  4NK6 A;  4YC5 A;  3SYJ A;  2QY1 A;  4W8S A;  2X6W A;  1QA3 A;  3JUR A;  2F3L A;  4YEI A;  1IA5 A;  4XKW A;  3GQ8 A;  1O8L A;  3PSZ A;  3T9G A;  5C1C A;  4MR0 A;  5JMC B;  3N6Z A;  3SY2 A;  2BM6 A;  1RWR A;  1O8I A;  2NT9 A;  2YUH A;  3PET A;  3NAW A;  1CLW A;  4Z06 A;  2QYU A;  2NTB A;  2O17 A;  3TH0 A;  1O88 A;  5JLV C;  2XT4 A;  4YZX A;  1IB4 A;  1TYV A;  1TYW A;  2PEC A;  1PLU A;  3B4N A;  5AMV A;  3ML3 A;  4OZZ A;  4Z03 A;  1KTW A;  3AK5 A;  4W8R A;  4YFO A;  1WXR A;  1TSP A;  1OGM X;  4XLH A;  3RIQ A;  1IDJ A;  4YEL A;  1IDK A;  2BM5 A;  4OPW A;  4U49 A;  2NTQ A;  4HWV A;  4URR A;  2UVE A;  2B0R A;  4OM9 A;  4XOT A;  1VBL A;  1OOC A;  3P4G A;  4C2L A;  1L1I A;  2VJI A;  4XOR A;  2EWE A; 
#chains in the Genus database with same CATH homology
 4XN0 A;  4YZA A;  2INU A;  2UVF A;  4NK8 A;  1O8G A;  4XN3 A;  4W8Q A;  5C1E A;  2VJJ A;  1DBO A;  4XR6 A;  1O8K A;  2QXZ A;  2O0V A;  4MXN A;  3GQ7 A;  4OJ5 A;  2VBM A;  3FY3 A;  4OJP A;  1KCD A;  3VSV A;  4AVZ A;  1WMR A;  1CZF A;  2NTP A;  4OJ6 A;  1O8E A;  4XLA A;  1PE9 A;  2X6Y A;  1KCC A;  1DBG A;  4XQF A;  1OFL A;  1H80 A;  1EE6 A;  4XL9 A;  3GQ9 A;  4XOP A;  1OGO X;  3ZPP A;  3B90 A;  2VBE A;  2NSP A;  1O8F A;  4YZ0 A;  1AIR A;  1QCX A;  1JRG A;  3ZSC A;  2ODL A;  4XNF A;  4U4B A;  1PXZ A;  4OZY A;  4OJL A;  1RMG A;  3GQA A;  1GQ8 A;  2IQ7 A;  1OFM A;  3KRG A;  3B8Y A;  2NST A;  2Z8G A;  1O8D A;  3VMV A;  3VSU A;  1K5C A;  2BSP A;  4W8T A;  4XON A;  4YZQ A;  4XMY A;  1NHC A;  2NZM A;  3SUC A;  2X85 A;  4EW9 A;  3GRH A;  2PYH A;  4XLE A;  1O8H A;  4XLF A;  3VST A;  1BN8 A;  2X6X A;  4XM3 A;  4YEJ A;  2O0W A;  1BHE A;  3LMW A;  2INV A;  2X3H A;  2PYG A;  4XLC A;  1X0C A;  3UW0 A;  1HG8 A;  1JTA A;  1RU4 A;  4Z05 A;  4XKV A;  1O8M A;  4OJO A;  1XG2 A;  3EQO A;  2NT6 A;  2QX3 A;  4PMH A;  3VMW A;  2O1D A;  2O04 A;  3WWG A;  2VBK A;  1QJV A;  3EQN A;  1O8J A;  4I84 A;  4NK6 A;  2QY1 A;  4W8S A;  2X6W A;  3JUR A;  1IA5 A;  4XKW A;  3GQ8 A;  1O8L A;  3T9G A;  5C1C A;  4MR0 A;  1RWR A;  1O8I A;  2NT9 A;  4Z06 A;  2NTB A;  2O17 A;  1O88 A;  4YZX A;  1IB4 A;  2PEC A;  1PLU A;  3B4N A;  5AMV A;  4OZZ A;  4Z03 A;  1KTW A;  4W8R A;  1OGM X;  4XLH A;  1IDJ A;  4YEL A;  1IDK A;  4U49 A;  2NTQ A;  4HWV A;  4URR A;  2UVE A;  4XOT A;  1VBL A;  1OOC A;  4C2L A;  2VJI A;  4XOR A;  2EWE A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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