2O17A

Pectate lyase bound to hexasaccharide
Total Genus 153
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
153
sequence length
399
structure length
399
Chain Sequence
ADLGHQTLGSNDGWGAYSTGTTGGSKASSSNVYTVSNRNQLVSALGKETNTTPKIIYIKGTIDMNVDDNLKPLGLNDYKDPEYDLDKYLKAYDPSTWGKKEPSGTQEEARARSQKNQKARVMVDIPANTTIVGSGTNAKVVGGNFQIKSDNVIIRNIEFQDAYDYFPQWDPTDGSSGNWNSQYDNITINGGTHIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITMSYNYYHDHDKSSIFGSSDSKTSDDGKLKITLHHNRYKNIVQAAPRVRFGQVHVYNNYYEGSTSSSSYPFSYAWGIGKSSKIYAQNNVIDVPGLSAAKTISVFSGGTALYDSGTLLNGTQINASAANGLSSSVGWTPSLHGSIDASANVKSNVINQAGAGKLN
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Lyase
source organism Bacillus subtilis
publication title Structural insights into substrate specificity and the anti beta-elimination mechanism of pectate lyase.
pubmed doi rcsb
molecule keywords Pectate lyase
total genus 153
structure length 399
sequence length 399
ec nomenclature ec 4.2.2.2: Pectate lyase.
pdb deposition date 2006-11-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00544 Pec_lyase_C Pectate lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 2o17A00
1OGMX 2O0VA 2VBMA 4XLHA 5AMVA 2PYGA 4OJPA 1O8MA 2VJIA 4YZXA 3VSVA 2ODLA 4XLAA 4XQFA 3GRHA 2QXZA 3VSUA 4W8TA 2X85A 4W8RA 1HG8A 4URRA 1OGOX 1QCXA 4XOPA 4XR6A 1IDKA 1K5CA 3EQOA 4XKVA 1RWRA 2PECA 4YELA 4YZQA 2UVFA 4OJLA 1KTWA 4Z05A 5C1CA 1O8LA 4MR0A 4U4BA 1RMGA 3WWGA 3JURA 2X6YA 4XLEA 2NTPA 4XORA 1CZFA 2NZMA 4PMHA 4XOTA 2NSPA 3FY3A 4NK8A 1WMRA 2O1DA 3KRGA 3SUCA 1XG2A 2O04A 3VMVA 2O17A 2X3HA 3LMWA 1VBLA 1DBGA 1O8EA 1EE6A 1PXZA 1BN8A 2O0WA 4OJ6A 3ZSCA 3GQAA 1PE9A 1BHEA 1H80A 4Z03A 1IB4A 1OFLA 4OJOA 3UW0A 1O8IA 4YEJA 4YZ0A 1QJVA 1O8DA 3EQNA 4I84A 4XN3A 4YZAA 4OJ5A 4HWVA 3T9GA 2PYHA 1O8FA 1O8KA 4XNFA 2NTQA 4XKWA 3VSTA 4U49A 2QY1A 4XL9A 2VBEA 3VMWA 2UVEA 3GQ8A 3GQ7A 1PLUA 4OZYA 2X6XA 2NSTA 3ZPPA 1KCCA 2EWEA 2INUA 2QX3A 1X0CA 4W8QA 2X6WA 1AIRA 1KCDA 1JRGA 5C1EA 1OFMA 1O8HA 1OOCA 2IQ7A 1GQ8A 4XLFA 3GQ9A 1JTAA 1DBOA 4XN0A 4AVZA 2VJJA 4XM3A 1RU4A 4XONA 3B90A 2NTBA 4C2LA 4MXNA 2VBKA 2Z8GA 2NT9A 4EW9A 2BSPA 4NK6A 4Z06A 1O88A 4W8SA 1IA5A 1O8GA 4XMYA 1O8JA 2NT6A 1NHCA 3B4NA 3B8YA 4OZZA 4XLCA 1IDJA 2INVA
chains in the Genus database with same CATH superfamily
1OGMX 2O0VA 2VBMA 4XLHA 5AMVA 3LJYA 2PYGA 4OJPA 1O8MA 2VJIA 4YZXA 4YFOA 2J8IA 2ODLA 3PSSA 3VSVA 2XT2A 2XTXA 1TYVA 4YCQA 4XLAA 4XQFA 2QZAA 3GRHA 2QXZA 3SQVA 3VSUA 4W8TA 2X85A 4W8RA 3NB2A 1HG8A 4URRA 1OGOX 1QCXA 4XOPA 2IOUG 4XR6A 1QA1A 1IDKA 5JMCB 1HF2A 1OFEA 1K5CA 3EQOA 4XKVA 1RWRA 2PECA 4YELA 4YZQA 1OFDA 2UVFA 4OJLA 1KTWA 4Z05A 5C1CA 1O8LA 4MR0A 4U4BA 1RMGA 3WWGA 1QRBA 2X6YA 2BM7A 2NTPA 3JURA 4XLEA 4XORA 1CZFA 3SZEA 2NZMA 4PMHA 4XOTA 2NSPA 1K8FA 3TH0A 3FY3A 4NK8A 1WMRA 2O1DA 1QA2A 1TYUA 3KRGA 1LLWA 3SUCA 1XG2A 2F3LA 2O04A 3VMVA 3AK5A 3NAWA 1DABA 2O17A 2X3HA 3LMWA 1VBLA 4OPWA 1DBGA 1K4ZA 3P4GA 1O8EA 1TYXA 1EE6A 2BM6A 1PXZA 1BN8A 2O0WA 1KQ5A 4OJ6A 3ZSCA 1LM1A 3GQAA 1PE9A 1BHEA 1H80A 2YUHA 4Z03A 3PETA 3SYJA 1IB4A 1OFLA 4OJOA 4YZ0A 3UW0A 4YEIA 1O8IA 4YEJA 2O6WA 1QJVA 1O8DA 3EQNA 4I84A 3JX8A 4XN3A 4YZAA 4OJ5A 3BH6B 2B0RA 4HWVA 3T9GA 3DU1X 2VFQA 2PYHA 4YC5A 2XT4A 1WXRA 2XTWA 1O8FA 1O8KA 4XNFA 3RIQA 1QRCA 2NTQA 3N6ZA 4XKWA 3VSTA 2QYUA 4U49A 2QY1A 3LYCA 4XL9A 5DNSA 2VBEA 3VMWA 2UVEA 3GQ8A 3GQ7A 2G0YA 1PLUA 3SY2A 4OZYA 2X6XA 1TYWA 3ML3A 2NSTA 3H09A 3ZPPA 1L1IA 1KCCA 2EWEA 2INUA 2VFOA 2QX3A 1X0CA 4W8QA 2X6WA 1AIRA 2VFMA 1QQ1A 2W7ZA 4V02C 1KCDA 1JRGA 2BM5A 4KH3A 5C1EA 1OFMA 1O8HA 1OOCA 2IQ7A 1GQ8A 2XTYA 3BH7B 4XLFA 3GQ9A 1JTAA 1DBOA 4XN0A 4AVZA 4YDTA 1EA0A 2VJJA 4XM3A 1RU4A 4OM9A 4XONA 3B90A 1EZGA 2NTBA 2VFPA 5JLVC 4C2LA 4MXNA 3PSZA 2V5IA 1LLZA 2VBKA 2Z8GA 2NT9A 4EW9A 2BSPA 2VFNA 4NK6A 1QA3A 4Z06A 4JRAC 1O88A 1TSPA 2BM4A 2BX6A 4W8SA 1IA5A 1O8GA 2J8KA 4XMYA 1O8JA 1CLWA 2NT6A 1NHCA 3B4NA 3B8YA 4OZZA 4XLCA 1IDJA 2XC1A 3N90A 2INVA
chains in the Genus database with same CATH topology
1OGMX 2O0VA 2VBMA 4XLHA 5AMVA 2PYGA 4OJPA 1O8MA 2VJIA 4YZXA 3VSVA 2ODLA 4XLAA 4XQFA 3GRHA 2QXZA 3VSUA 4W8TA 2X85A 4W8RA 1HG8A 4URRA 1OGOX 1QCXA 4XOPA 4XR6A 1IDKA 1K5CA 3EQOA 4XKVA 1RWRA 2PECA 4YELA 4YZQA 2UVFA 4OJLA 1KTWA 4Z05A 5C1CA 1O8LA 4MR0A 4U4BA 1RMGA 3WWGA 3JURA 2X6YA 4XLEA 2NTPA 4XORA 1CZFA 2NZMA 4PMHA 4XOTA 2NSPA 3FY3A 4NK8A 1WMRA 2O1DA 3KRGA 3SUCA 1XG2A 2O04A 3VMVA 2O17A 2X3HA 3LMWA 1VBLA 1DBGA 1O8EA 1EE6A 1PXZA 1BN8A 2O0WA 4OJ6A 3ZSCA 3GQAA 1PE9A 1BHEA 1H80A 4Z03A 1IB4A 1OFLA 4OJOA 3UW0A 1O8IA 4YEJA 4YZ0A 1QJVA 1O8DA 3EQNA 4I84A 4XN3A 4YZAA 4OJ5A 4HWVA 3T9GA 2PYHA 1O8FA 1O8KA 4XNFA 2NTQA 4XKWA 3VSTA 4U49A 2QY1A 4XL9A 2VBEA 3VMWA 2UVEA 3GQ8A 3GQ7A 1PLUA 4OZYA 2X6XA 2NSTA 3ZPPA 1KCCA 2EWEA 2INUA 2QX3A 1X0CA 4W8QA 2X6WA 1AIRA 1KCDA 1JRGA 5C1EA 1OFMA 1O8HA 1OOCA 2IQ7A 1GQ8A 4XLFA 3GQ9A 1JTAA 1DBOA 4XN0A 4AVZA 2VJJA 4XM3A 1RU4A 4XONA 3B90A 2NTBA 4C2LA 4MXNA 2VBKA 2Z8GA 2NT9A 4EW9A 2BSPA 4NK6A 4Z06A 1O88A 4W8SA 1IA5A 1O8GA 4XMYA 1O8JA 2NT6A 1NHCA 3B4NA 3B8YA 4OZZA 4XLCA 1IDJA 2INVA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1OGM X;  2O0V A;  2VBM A;  4XLH A;  5AMV A;  2PYG A;  4OJP A;  1O8M A;  2VJI A;  4YZX A;  3VSV A;  2ODL A;  4XLA A;  4XQF A;  3GRH A;  2QXZ A;  3VSU A;  4W8T A;  2X85 A;  4W8R A;  1HG8 A;  4URR A;  1OGO X;  1QCX A;  4XOP A;  4XR6 A;  1IDK A;  1K5C A;  3EQO A;  4XKV A;  1RWR A;  2PEC A;  4YEL A;  4YZQ A;  2UVF A;  4OJL A;  1KTW A;  4Z05 A;  5C1C A;  1O8L A;  4MR0 A;  4U4B A;  1RMG A;  3WWG A;  3JUR A;  2X6Y A;  4XLE A;  2NTP A;  4XOR A;  1CZF A;  2NZM A;  4PMH A;  4XOT A;  2NSP A;  3FY3 A;  4NK8 A;  1WMR A;  2O1D A;  3KRG A;  3SUC A;  1XG2 A;  2O04 A;  3VMV A;  2O17 A;  2X3H A;  3LMW A;  1VBL A;  1DBG A;  1O8E A;  1EE6 A;  1PXZ A;  1BN8 A;  2O0W A;  4OJ6 A;  3ZSC A;  3GQA A;  1PE9 A;  1BHE A;  1H80 A;  4Z03 A;  1IB4 A;  1OFL A;  4OJO A;  3UW0 A;  1O8I A;  4YEJ A;  4YZ0 A;  1QJV A;  1O8D A;  3EQN A;  4I84 A;  4XN3 A;  4YZA A;  4OJ5 A;  4HWV A;  3T9G A;  2PYH A;  1O8F A;  1O8K A;  4XNF A;  2NTQ A;  4XKW A;  3VST A;  4U49 A;  2QY1 A;  4XL9 A;  2VBE A;  3VMW A;  2UVE A;  3GQ8 A;  3GQ7 A;  1PLU A;  4OZY A;  2X6X A;  2NST A;  3ZPP A;  1KCC A;  2EWE A;  2INU A;  2QX3 A;  1X0C A;  4W8Q A;  2X6W A;  1AIR A;  1KCD A;  1JRG A;  5C1E A;  1OFM A;  1O8H A;  1OOC A;  2IQ7 A;  1GQ8 A;  4XLF A;  3GQ9 A;  1JTA A;  1DBO A;  4XN0 A;  4AVZ A;  2VJJ A;  4XM3 A;  1RU4 A;  4XON A;  3B90 A;  2NTB A;  4C2L A;  4MXN A;  2VBK A;  2Z8G A;  2NT9 A;  4EW9 A;  2BSP A;  4NK6 A;  4Z06 A;  1O88 A;  4W8S A;  1IA5 A;  1O8G A;  4XMY A;  1O8J A;  2NT6 A;  1NHC A;  3B4N A;  3B8Y A;  4OZZ A;  4XLC A;  1IDJ A;  2INV A; 
#chains in the Genus database with same CATH topology
 1OGM X;  2O0V A;  2VBM A;  4XLH A;  5AMV A;  3LJY A;  2PYG A;  4OJP A;  1O8M A;  2VJI A;  4YZX A;  4YFO A;  2J8I A;  2ODL A;  3PSS A;  3VSV A;  2XT2 A;  2XTX A;  1TYV A;  4YCQ A;  4XLA A;  4XQF A;  2QZA A;  3GRH A;  2QXZ A;  3SQV A;  3VSU A;  4W8T A;  2X85 A;  4W8R A;  3NB2 A;  1HG8 A;  4URR A;  1OGO X;  1QCX A;  4XOP A;  2IOU G;  4XR6 A;  1QA1 A;  1IDK A;  5JMC B;  1HF2 A;  1OFE A;  1K5C A;  3EQO A;  4XKV A;  1RWR A;  2PEC A;  4YEL A;  4YZQ A;  1OFD A;  2UVF A;  4OJL A;  1KTW A;  4Z05 A;  5C1C A;  1O8L A;  4MR0 A;  4U4B A;  1RMG A;  3WWG A;  1QRB A;  2X6Y A;  2BM7 A;  2NTP A;  3JUR A;  4XLE A;  4XOR A;  1CZF A;  3SZE A;  2NZM A;  4PMH A;  4XOT A;  2NSP A;  1K8F A;  3TH0 A;  3FY3 A;  4NK8 A;  1WMR A;  2O1D A;  1QA2 A;  1TYU A;  3KRG A;  1LLW A;  3SUC A;  1XG2 A;  2F3L A;  2O04 A;  3VMV A;  3AK5 A;  3NAW A;  1DAB A;  2O17 A;  2X3H A;  3LMW A;  1VBL A;  4OPW A;  1DBG A;  1K4Z A;  3P4G A;  1O8E A;  1TYX A;  1EE6 A;  2BM6 A;  1PXZ A;  1BN8 A;  2O0W A;  1KQ5 A;  4OJ6 A;  3ZSC A;  1LM1 A;  3GQA A;  1PE9 A;  1BHE A;  1H80 A;  2YUH A;  4Z03 A;  3PET A;  3SYJ A;  1IB4 A;  1OFL A;  4OJO A;  4YZ0 A;  3UW0 A;  4YEI A;  1O8I A;  4YEJ A;  2O6W A;  1QJV A;  1O8D A;  3EQN A;  4I84 A;  3JX8 A;  4XN3 A;  4YZA A;  4OJ5 A;  3BH6 B;  2B0R A;  4HWV A;  3T9G A;  3DU1 X;  2VFQ A;  2PYH A;  4YC5 A;  2XT4 A;  1WXR A;  2XTW A;  1O8F A;  1O8K A;  4XNF A;  3RIQ A;  1QRC A;  2NTQ A;  3N6Z A;  4XKW A;  3VST A;  2QYU A;  4U49 A;  2QY1 A;  3LYC A;  4XL9 A;  5DNS A;  2VBE A;  3VMW A;  2UVE A;  3GQ8 A;  3GQ7 A;  2G0Y A;  1PLU A;  3SY2 A;  4OZY A;  2X6X A;  1TYW A;  3ML3 A;  2NST A;  3H09 A;  3ZPP A;  1L1I A;  1KCC A;  2EWE A;  2INU A;  2VFO A;  2QX3 A;  1X0C A;  4W8Q A;  2X6W A;  1AIR A;  2VFM A;  1QQ1 A;  2W7Z A;  4V02 C;  1KCD A;  1JRG A;  2BM5 A;  4KH3 A;  5C1E A;  1OFM A;  1O8H A;  1OOC A;  2IQ7 A;  1GQ8 A;  2XTY A;  3BH7 B;  4XLF A;  3GQ9 A;  1JTA A;  1DBO A;  4XN0 A;  4AVZ A;  4YDT A;  1EA0 A;  2VJJ A;  4XM3 A;  1RU4 A;  4OM9 A;  4XON A;  3B90 A;  1EZG A;  2NTB A;  2VFP A;  5JLV C;  4C2L A;  4MXN A;  3PSZ A;  2V5I A;  1LLZ A;  2VBK A;  2Z8G A;  2NT9 A;  4EW9 A;  2BSP A;  2VFN A;  4NK6 A;  1QA3 A;  4Z06 A;  4JRA C;  1O88 A;  1TSP A;  2BM4 A;  2BX6 A;  4W8S A;  1IA5 A;  1O8G A;  2J8K A;  4XMY A;  1O8J A;  1CLW A;  2NT6 A;  1NHC A;  3B4N A;  3B8Y A;  4OZZ A;  4XLC A;  1IDJ A;  2XC1 A;  3N90 A;  2INV A; 
#chains in the Genus database with same CATH homology
 1OGM X;  2O0V A;  2VBM A;  4XLH A;  5AMV A;  2PYG A;  4OJP A;  1O8M A;  2VJI A;  4YZX A;  3VSV A;  2ODL A;  4XLA A;  4XQF A;  3GRH A;  2QXZ A;  3VSU A;  4W8T A;  2X85 A;  4W8R A;  1HG8 A;  4URR A;  1OGO X;  1QCX A;  4XOP A;  4XR6 A;  1IDK A;  1K5C A;  3EQO A;  4XKV A;  1RWR A;  2PEC A;  4YEL A;  4YZQ A;  2UVF A;  4OJL A;  1KTW A;  4Z05 A;  5C1C A;  1O8L A;  4MR0 A;  4U4B A;  1RMG A;  3WWG A;  3JUR A;  2X6Y A;  4XLE A;  2NTP A;  4XOR A;  1CZF A;  2NZM A;  4PMH A;  4XOT A;  2NSP A;  3FY3 A;  4NK8 A;  1WMR A;  2O1D A;  3KRG A;  3SUC A;  1XG2 A;  2O04 A;  3VMV A;  2O17 A;  2X3H A;  3LMW A;  1VBL A;  1DBG A;  1O8E A;  1EE6 A;  1PXZ A;  1BN8 A;  2O0W A;  4OJ6 A;  3ZSC A;  3GQA A;  1PE9 A;  1BHE A;  1H80 A;  4Z03 A;  1IB4 A;  1OFL A;  4OJO A;  3UW0 A;  1O8I A;  4YEJ A;  4YZ0 A;  1QJV A;  1O8D A;  3EQN A;  4I84 A;  4XN3 A;  4YZA A;  4OJ5 A;  4HWV A;  3T9G A;  2PYH A;  1O8F A;  1O8K A;  4XNF A;  2NTQ A;  4XKW A;  3VST A;  4U49 A;  2QY1 A;  4XL9 A;  2VBE A;  3VMW A;  2UVE A;  3GQ8 A;  3GQ7 A;  1PLU A;  4OZY A;  2X6X A;  2NST A;  3ZPP A;  1KCC A;  2EWE A;  2INU A;  2QX3 A;  1X0C A;  4W8Q A;  2X6W A;  1AIR A;  1KCD A;  1JRG A;  5C1E A;  1OFM A;  1O8H A;  1OOC A;  2IQ7 A;  1GQ8 A;  4XLF A;  3GQ9 A;  1JTA A;  1DBO A;  4XN0 A;  4AVZ A;  2VJJ A;  4XM3 A;  1RU4 A;  4XON A;  3B90 A;  2NTB A;  4C2L A;  4MXN A;  2VBK A;  2Z8G A;  2NT9 A;  4EW9 A;  2BSP A;  4NK6 A;  4Z06 A;  1O88 A;  4W8S A;  1IA5 A;  1O8G A;  4XMY A;  1O8J A;  2NT6 A;  1NHC A;  3B4N A;  3B8Y A;  4OZZ A;  4XLC A;  1IDJ A;  2INV A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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