2O17A

Pectate lyase bound to hexasaccharide
Total Genus 153
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
153
sequence length
399
structure length
399
Chain Sequence
b'ADLGHQTLGSNDGWGAYSTGTTGGSKASSSNVYTVSNRNQLVSALGKETNTTPKIIYIKGTIDMNVDDNLKPLGLNDYKDPEYDLDKYLKAYDPSTWGKKEPSGTQEEARARSQKNQKARVMVDIPANTTIVGSGTNAKVVGGNFQIKSDNVIIRNIEFQDAYDYFPQWDPTDGSSGNWNSQYDNITINGGTHIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITMSYNYYHDHDKSSIFGSSDSKTSDDGKLKITLHHNRYKNIVQAAPRVRFGQVHVYNNYYEGSTSSSSYPFSYAWGIGKSSKIYAQNNVIDVPGLSAAKTISVFSGGTALYDSGTLLNGTQINASAANGLSSSVGWTPSLHGSIDASANVKSNVINQAGAGKLN'
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Pectate lyase
publication title Structural insights into substrate specificity and the anti beta-elimination mechanism of pectate lyase.
pubmed doi rcsb
source organism Bacillus subtilis
molecule tags Lyase
total genus 153
structure length 399
sequence length 399
ec nomenclature ec 4.2.2.2: Pectate lyase.
pdb deposition date 2006-11-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00544 Pec_lyase_C Pectate lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 2o17A00
4W8TA 1KCCA 2NTQA 2VBKA 1O8FA 4OJPA 2QY1A 4Z05A 4XLHA 4YZ0A 4AVZA 1OFLA 5C1CA 1O8KA 2UVEA 4XLAA 1O8JA 4XR6A 4OJ6A 4U49A 1DBGA 2NT6A 4XLFA 1QCXA 1RWRA 4XORA 3VMVA 4I84A 1K5CA 2PYHA 1BN8A 4U4BA 4NK8A 4YZAA 2O0VA 3GQ8A 3KRGA 4XL9A 1OGOX 4PMHA 2X6YA 2EWEA 1IDJA 2PECA 4C2LA 4XNFA 3VSTA 2X3HA 4XLEA 1OGMX 4YZXA 1O8DA 5AMVA 4YZQA 4XMYA 2QX3A 2VBEA 1CZFA 2NSTA 3UW0A 4OJLA 3GQ7A 2INUA 2INVA 3JURA 5C1EA 1NHCA 1OFMA 3GQ9A 2NTPA 1BHEA 1KCDA 2UVFA 2VJJA 4XLCA 1KTWA 2Z8GA 1OOCA 2NSPA 4XONA 2O0WA 2X6WA 2O04A 1WMRA 3VSUA 4YEJA 3ZSCA 4XKVA 3ZPPA 2BSPA 3WWGA 4XM3A 1O8EA 1O88A 2X85A 2O17A 2X6XA 4OZZA 1RU4A 1HG8A 2VBMA 1O8GA 4MXNA 4XN3A 3B90A 1VBLA 2QXZA 3FY3A 1GQ8A 4URRA 4XKWA 4Z03A 3B8YA 1RMGA 2PYGA 2NTBA 2ODLA 3VMWA 1H80A 1O8HA 4XN0A 4OZYA 1AIRA 4W8SA 2NZMA 4OJ5A 1JRGA 4Z06A 1PE9A 4MR0A 3VSVA 4XOTA 2VJIA 4HWVA 4XOPA 1O8MA 1O8LA 1X0CA 3EQOA 4NK6A 2O1DA 3GQAA 1O8IA 4W8RA 2IQ7A 3LMWA 3B4NA 2NT9A 4OJOA 4XQFA 1IA5A 3T9GA 1XG2A 1IDKA 1PLUA 3SUCA 4EW9A 1IB4A 4YELA 1QJVA 3GRHA 1DBOA 1JTAA 4W8QA 1PXZA 1EE6A 3EQNA
chains in the Genus database with same CATH superfamily
4W8TA 1KCCA 2NTQA 2VBKA 1O8FA 1TYVA 3BH7B 2QY1A 3DU1X 4OJPA 4Z05A 4XLHA 4YZ0A 2J8KA 4AVZA 1OFLA 3ML3A 5C1CA 1O8KA 2UVEA 4XLAA 4YDTA 1O8JA 4V02C 1QA3A 4XR6A 4OJ6A 2F3LA 1TYUA 4U49A 1DBGA 2NT6A 2BM7A 1QCXA 1RWRA 3LJYA 4XLFA 4XORA 3VMVA 1QA1A 1QA2A 4I84A 3AK5A 1K5CA 2PYHA 1LLWA 1BN8A 4U4BA 2O6WA 4NK8A 4OPWA 4YZAA 4YCQA 2O0VA 2VFQA 1EZGA 2QYUA 2W7ZA 3GQ8A 3KRGA 4XL9A 1TYXA 1OGOX 4PMHA 2X6YA 2EWEA 2VFMA 2J8IA 1IDJA 2PECA 1K4ZA 4XNFA 3VSTA 4C2LA 1K8FA 2X3HA 4XLEA 1OGMX 4YZXA 1O8DA 5AMVA 4YZQA 4XMYA 2QX3A 1QQ1A 1CZFA 2NSTA 2VBEA 3UW0A 4OJLA 3GQ7A 1LM1A 2XT4A 3BH6B 2INUA 2INVA 3RIQA 2YUHA 3JURA 5C1EA 3SQVA 1OFDA 1NHCA 2XTXA 2BM4A 1OFMA 2XTWA 3GQ9A 2NTPA 2XC1A 4YEIA 1BHEA 1HF2A 4KH3A 3N6ZA 4YC5A 2UVFA 2VJJA 4XLCA 1KCDA 1KTWA 2Z8GA 1OOCA 2NSPA 4XONA 2O0WA 1QRCA 2X6WA 2O04A 1EA0A 1WMRA 2VFOA 3VSUA 1LLZA 4YEJA 3ZSCA 4XKVA 3ZPPA 2BX6A 3TH0A 2BSPA 3WWGA 4XM3A 3NAWA 1O8EA 1TSPA 1O88A 4YFOA 5DNSA 2X85A 1QRBA 2O17A 2X6XA 4OZZA 1RU4A 1HG8A 2VBMA 1O8GA 3NB2A 4MXNA 4XN3A 3B90A 1VBLA 2QXZA 3FY3A 3SYJA 1GQ8A 2XT2A 2IOUG 3PETA 4URRA 3JX8A 4XKWA 4Z03A 1CLWA 3PSZA 2V5IA 3B8YA 1RMGA 2PYGA 1TYWA 2NTBA 2ODLA 2VFNA 1H80A 3VMWA 1DABA 4OM9A 1O8HA 4XN0A 4OZYA 2B0RA 1WXRA 2XTYA 1AIRA 4W8SA 2NZMA 1OFEA 1JRGA 4OJ5A 4Z06A 1PE9A 3N90A 4MR0A 3VSVA 4XOTA 2VJIA 4HWVA 4XOPA 3SZEA 2BM5A 1O8MA 1O8LA 2VFPA 1X0CA 3P4GA 3EQOA 4NK6A 2G0YA 2QZAA 3LYCA 4JRAC 2O1DA 3GQAA 1O8IA 4W8RA 5JLVC 2IQ7A 3LMWA 3B4NA 2NT9A 4OJOA 3SY2A 4XQFA 1IA5A 1L1IA 3T9GA 1XG2A 3PSSA 1IDKA 1PLUA 3SUCA 4EW9A 1IB4A 4YELA 2BM6A 1QJVA 3GRHA 1DBOA 1KQ5A 1JTAA 4W8QA 1PXZA 1EE6A 3EQNA 3H09A 5JMCB
chains in the Genus database with same CATH topology
4W8TA 1KCCA 2NTQA 2VBKA 1O8FA 4OJPA 2QY1A 4Z05A 4XLHA 4YZ0A 4AVZA 1OFLA 5C1CA 1O8KA 2UVEA 4XLAA 1O8JA 4XR6A 4OJ6A 4U49A 1DBGA 2NT6A 4XLFA 1QCXA 1RWRA 4XORA 3VMVA 4I84A 1K5CA 2PYHA 1BN8A 4U4BA 4NK8A 4YZAA 2O0VA 3GQ8A 3KRGA 4XL9A 1OGOX 4PMHA 2X6YA 2EWEA 1IDJA 2PECA 4C2LA 4XNFA 3VSTA 2X3HA 4XLEA 1OGMX 4YZXA 1O8DA 5AMVA 4YZQA 4XMYA 2QX3A 2VBEA 1CZFA 2NSTA 3UW0A 4OJLA 3GQ7A 2INUA 2INVA 3JURA 5C1EA 1NHCA 1OFMA 3GQ9A 2NTPA 1BHEA 1KCDA 2UVFA 2VJJA 4XLCA 1KTWA 2Z8GA 1OOCA 2NSPA 4XONA 2O0WA 2X6WA 2O04A 1WMRA 3VSUA 4YEJA 3ZSCA 4XKVA 3ZPPA 2BSPA 3WWGA 4XM3A 1O8EA 1O88A 2X85A 2O17A 2X6XA 4OZZA 1RU4A 1HG8A 2VBMA 1O8GA 4MXNA 4XN3A 3B90A 1VBLA 2QXZA 3FY3A 1GQ8A 4URRA 4XKWA 4Z03A 3B8YA 1RMGA 2PYGA 2NTBA 2ODLA 3VMWA 1H80A 1O8HA 4XN0A 4OZYA 1AIRA 4W8SA 2NZMA 4OJ5A 1JRGA 4Z06A 1PE9A 4MR0A 3VSVA 4XOTA 2VJIA 4HWVA 4XOPA 1O8MA 1O8LA 1X0CA 3EQOA 4NK6A 2O1DA 3GQAA 1O8IA 4W8RA 2IQ7A 3LMWA 3B4NA 2NT9A 4OJOA 4XQFA 1IA5A 3T9GA 1XG2A 1IDKA 1PLUA 3SUCA 4EW9A 1IB4A 4YELA 1QJVA 3GRHA 1DBOA 1JTAA 4W8QA 1PXZA 1EE6A 3EQNA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4W8T A;  1KCC A;  2NTQ A;  2VBK A;  1O8F A;  4OJP A;  2QY1 A;  4Z05 A;  4XLH A;  4YZ0 A;  4AVZ A;  1OFL A;  5C1C A;  1O8K A;  2UVE A;  4XLA A;  1O8J A;  4XR6 A;  4OJ6 A;  4U49 A;  1DBG A;  2NT6 A;  4XLF A;  1QCX A;  1RWR A;  4XOR A;  3VMV A;  4I84 A;  1K5C A;  2PYH A;  1BN8 A;  4U4B A;  4NK8 A;  4YZA A;  2O0V A;  3GQ8 A;  3KRG A;  4XL9 A;  1OGO X;  4PMH A;  2X6Y A;  2EWE A;  1IDJ A;  2PEC A;  4C2L A;  4XNF A;  3VST A;  2X3H A;  4XLE A;  1OGM X;  4YZX A;  1O8D A;  5AMV A;  4YZQ A;  4XMY A;  2QX3 A;  2VBE A;  1CZF A;  2NST A;  3UW0 A;  4OJL A;  3GQ7 A;  2INU A;  2INV A;  3JUR A;  5C1E A;  1NHC A;  1OFM A;  3GQ9 A;  2NTP A;  1BHE A;  1KCD A;  2UVF A;  2VJJ A;  4XLC A;  1KTW A;  2Z8G A;  1OOC A;  2NSP A;  4XON A;  2O0W A;  2X6W A;  2O04 A;  1WMR A;  3VSU A;  4YEJ A;  3ZSC A;  4XKV A;  3ZPP A;  2BSP A;  3WWG A;  4XM3 A;  1O8E A;  1O88 A;  2X85 A;  2O17 A;  2X6X A;  4OZZ A;  1RU4 A;  1HG8 A;  2VBM A;  1O8G A;  4MXN A;  4XN3 A;  3B90 A;  1VBL A;  2QXZ A;  3FY3 A;  1GQ8 A;  4URR A;  4XKW A;  4Z03 A;  3B8Y A;  1RMG A;  2PYG A;  2NTB A;  2ODL A;  3VMW A;  1H80 A;  1O8H A;  4XN0 A;  4OZY A;  1AIR A;  4W8S A;  2NZM A;  4OJ5 A;  1JRG A;  4Z06 A;  1PE9 A;  4MR0 A;  3VSV A;  4XOT A;  2VJI A;  4HWV A;  4XOP A;  1O8M A;  1O8L A;  1X0C A;  3EQO A;  4NK6 A;  2O1D A;  3GQA A;  1O8I A;  4W8R A;  2IQ7 A;  3LMW A;  3B4N A;  2NT9 A;  4OJO A;  4XQF A;  1IA5 A;  3T9G A;  1XG2 A;  1IDK A;  1PLU A;  3SUC A;  4EW9 A;  1IB4 A;  4YEL A;  1QJV A;  3GRH A;  1DBO A;  1JTA A;  4W8Q A;  1PXZ A;  1EE6 A;  3EQN A; 
#chains in the Genus database with same CATH topology
 4W8T A;  1KCC A;  2NTQ A;  2VBK A;  1O8F A;  1TYV A;  3BH7 B;  2QY1 A;  3DU1 X;  4OJP A;  4Z05 A;  4XLH A;  4YZ0 A;  2J8K A;  4AVZ A;  1OFL A;  3ML3 A;  5C1C A;  1O8K A;  2UVE A;  4XLA A;  4YDT A;  1O8J A;  4V02 C;  1QA3 A;  4XR6 A;  4OJ6 A;  2F3L A;  1TYU A;  4U49 A;  1DBG A;  2NT6 A;  2BM7 A;  1QCX A;  1RWR A;  3LJY A;  4XLF A;  4XOR A;  3VMV A;  1QA1 A;  1QA2 A;  4I84 A;  3AK5 A;  1K5C A;  2PYH A;  1LLW A;  1BN8 A;  4U4B A;  2O6W A;  4NK8 A;  4OPW A;  4YZA A;  4YCQ A;  2O0V A;  2VFQ A;  1EZG A;  2QYU A;  2W7Z A;  3GQ8 A;  3KRG A;  4XL9 A;  1TYX A;  1OGO X;  4PMH A;  2X6Y A;  2EWE A;  2VFM A;  2J8I A;  1IDJ A;  2PEC A;  1K4Z A;  4XNF A;  3VST A;  4C2L A;  1K8F A;  2X3H A;  4XLE A;  1OGM X;  4YZX A;  1O8D A;  5AMV A;  4YZQ A;  4XMY A;  2QX3 A;  1QQ1 A;  1CZF A;  2NST A;  2VBE A;  3UW0 A;  4OJL A;  3GQ7 A;  1LM1 A;  2XT4 A;  3BH6 B;  2INU A;  2INV A;  3RIQ A;  2YUH A;  3JUR A;  5C1E A;  3SQV A;  1OFD A;  1NHC A;  2XTX A;  2BM4 A;  1OFM A;  2XTW A;  3GQ9 A;  2NTP A;  2XC1 A;  4YEI A;  1BHE A;  1HF2 A;  4KH3 A;  3N6Z A;  4YC5 A;  2UVF A;  2VJJ A;  4XLC A;  1KCD A;  1KTW A;  2Z8G A;  1OOC A;  2NSP A;  4XON A;  2O0W A;  1QRC A;  2X6W A;  2O04 A;  1EA0 A;  1WMR A;  2VFO A;  3VSU A;  1LLZ A;  4YEJ A;  3ZSC A;  4XKV A;  3ZPP A;  2BX6 A;  3TH0 A;  2BSP A;  3WWG A;  4XM3 A;  3NAW A;  1O8E A;  1TSP A;  1O88 A;  4YFO A;  5DNS A;  2X85 A;  1QRB A;  2O17 A;  2X6X A;  4OZZ A;  1RU4 A;  1HG8 A;  2VBM A;  1O8G A;  3NB2 A;  4MXN A;  4XN3 A;  3B90 A;  1VBL A;  2QXZ A;  3FY3 A;  3SYJ A;  1GQ8 A;  2XT2 A;  2IOU G;  3PET A;  4URR A;  3JX8 A;  4XKW A;  4Z03 A;  1CLW A;  3PSZ A;  2V5I A;  3B8Y A;  1RMG A;  2PYG A;  1TYW A;  2NTB A;  2ODL A;  2VFN A;  1H80 A;  3VMW A;  1DAB A;  4OM9 A;  1O8H A;  4XN0 A;  4OZY A;  2B0R A;  1WXR A;  2XTY A;  1AIR A;  4W8S A;  2NZM A;  1OFE A;  1JRG A;  4OJ5 A;  4Z06 A;  1PE9 A;  3N90 A;  4MR0 A;  3VSV A;  4XOT A;  2VJI A;  4HWV A;  4XOP A;  3SZE A;  2BM5 A;  1O8M A;  1O8L A;  2VFP A;  1X0C A;  3P4G A;  3EQO A;  4NK6 A;  2G0Y A;  2QZA A;  3LYC A;  4JRA C;  2O1D A;  3GQA A;  1O8I A;  4W8R A;  5JLV C;  2IQ7 A;  3LMW A;  3B4N A;  2NT9 A;  4OJO A;  3SY2 A;  4XQF A;  1IA5 A;  1L1I A;  3T9G A;  1XG2 A;  3PSS A;  1IDK A;  1PLU A;  3SUC A;  4EW9 A;  1IB4 A;  4YEL A;  2BM6 A;  1QJV A;  3GRH A;  1DBO A;  1KQ5 A;  1JTA A;  4W8Q A;  1PXZ A;  1EE6 A;  3EQN A;  3H09 A;  5JMC B; 
#chains in the Genus database with same CATH homology
 4W8T A;  1KCC A;  2NTQ A;  2VBK A;  1O8F A;  4OJP A;  2QY1 A;  4Z05 A;  4XLH A;  4YZ0 A;  4AVZ A;  1OFL A;  5C1C A;  1O8K A;  2UVE A;  4XLA A;  1O8J A;  4XR6 A;  4OJ6 A;  4U49 A;  1DBG A;  2NT6 A;  4XLF A;  1QCX A;  1RWR A;  4XOR A;  3VMV A;  4I84 A;  1K5C A;  2PYH A;  1BN8 A;  4U4B A;  4NK8 A;  4YZA A;  2O0V A;  3GQ8 A;  3KRG A;  4XL9 A;  1OGO X;  4PMH A;  2X6Y A;  2EWE A;  1IDJ A;  2PEC A;  4C2L A;  4XNF A;  3VST A;  2X3H A;  4XLE A;  1OGM X;  4YZX A;  1O8D A;  5AMV A;  4YZQ A;  4XMY A;  2QX3 A;  2VBE A;  1CZF A;  2NST A;  3UW0 A;  4OJL A;  3GQ7 A;  2INU A;  2INV A;  3JUR A;  5C1E A;  1NHC A;  1OFM A;  3GQ9 A;  2NTP A;  1BHE A;  1KCD A;  2UVF A;  2VJJ A;  4XLC A;  1KTW A;  2Z8G A;  1OOC A;  2NSP A;  4XON A;  2O0W A;  2X6W A;  2O04 A;  1WMR A;  3VSU A;  4YEJ A;  3ZSC A;  4XKV A;  3ZPP A;  2BSP A;  3WWG A;  4XM3 A;  1O8E A;  1O88 A;  2X85 A;  2O17 A;  2X6X A;  4OZZ A;  1RU4 A;  1HG8 A;  2VBM A;  1O8G A;  4MXN A;  4XN3 A;  3B90 A;  1VBL A;  2QXZ A;  3FY3 A;  1GQ8 A;  4URR A;  4XKW A;  4Z03 A;  3B8Y A;  1RMG A;  2PYG A;  2NTB A;  2ODL A;  3VMW A;  1H80 A;  1O8H A;  4XN0 A;  4OZY A;  1AIR A;  4W8S A;  2NZM A;  4OJ5 A;  1JRG A;  4Z06 A;  1PE9 A;  4MR0 A;  3VSV A;  4XOT A;  2VJI A;  4HWV A;  4XOP A;  1O8M A;  1O8L A;  1X0C A;  3EQO A;  4NK6 A;  2O1D A;  3GQA A;  1O8I A;  4W8R A;  2IQ7 A;  3LMW A;  3B4N A;  2NT9 A;  4OJO A;  4XQF A;  1IA5 A;  3T9G A;  1XG2 A;  1IDK A;  1PLU A;  3SUC A;  4EW9 A;  1IB4 A;  4YEL A;  1QJV A;  3GRH A;  1DBO A;  1JTA A;  4W8Q A;  1PXZ A;  1EE6 A;  3EQN A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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