2O17A

Pectate lyase bound to hexasaccharide
Total Genus 153
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
153
sequence length
399
structure length
399
Chain Sequence
ADLGHQTLGSNDGWGAYSTGTTGGSKASSSNVYTVSNRNQLVSALGKETNTTPKIIYIKGTIDMNVDDNLKPLGLNDYKDPEYDLDKYLKAYDPSTWGKKEPSGTQEEARARSQKNQKARVMVDIPANTTIVGSGTNAKVVGGNFQIKSDNVIIRNIEFQDAYDYFPQWDPTDGSSGNWNSQYDNITINGGTHIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITMSYNYYHDHDKSSIFGSSDSKTSDDGKLKITLHHNRYKNIVQAAPRVRFGQVHVYNNYYEGSTSSSSYPFSYAWGIGKSSKIYAQNNVIDVPGLSAAKTISVFSGGTALYDSGTLLNGTQINASAANGLSSSVGWTPSLHGSIDASANVKSNVINQAGAGKLN
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Structural insights into substrate specificity and the anti beta-elimination mechanism of pectate lyase.
pubmed doi rcsb
source organism Bacillus subtilis
molecule tags Lyase
molecule keywords Pectate lyase
total genus 153
structure length 399
sequence length 399
ec nomenclature ec 4.2.2.2: Pectate lyase.
pdb deposition date 2006-11-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00544 Pec_lyase_C Pectate lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 2o17A00
4XOPA 1IDJA 1RWRA 3GRHA 1AIRA 4OJLA 4XQFA 2NSTA 2NTPA 3JURA 1O8IA 4XLEA 1KTWA 3EQOA 4XLFA 4W8TA 4C2LA 1O88A 4URRA 4OZYA 1RMGA 2PYHA 1PLUA 4EW9A 2IQ7A 2NT6A 4OJ6A 2O17A 2QXZA 4XONA 4Z05A 3VSUA 2X6YA 1O8JA 2INUA 4XM3A 2EWEA 1KCCA 1IDKA 4XORA 1O8MA 1BN8A 1EE6A 2NSPA 3LMWA 4YELA 3VMWA 2O1DA 3GQ8A 4YZXA 2X3HA 2INVA 1DBOA 4XKVA 3ZSCA 4Z06A 3B8YA 4MR0A 1O8DA 2NTQA 2Z8GA 4XLHA 1OFMA 1OOCA 4W8RA 2ODLA 1JRGA 1KCDA 4XN3A 4HWVA 4XR6A 3GQAA 3WWGA 1IA5A 3B4NA 4W8QA 2VBEA 3VSTA 5AMVA 4XL9A 4PMHA 4YZ0A 2X6XA 4MXNA 4YEJA 4XN0A 4U49A 1QCXA 3EQNA 3KRGA 3B90A 2VBKA 1O8LA 1NHCA 5C1EA 3UW0A 1X0CA 2NZMA 2O0WA 4OJ5A 2PECA 2UVFA 4I84A 1GQ8A 2UVEA 3VMVA 3FY3A 2NTBA 4XMYA 2QY1A 1PE9A 2X6WA 4OJOA 4XNFA 1JTAA 1PXZA 1O8EA 1RU4A 2VJIA 1QJVA 3VSVA 1XG2A 4OJPA 1O8GA 2X85A 2VBMA 1VBLA 1O8HA 1OFLA 4YZAA 4NK8A 2O0VA 4AVZA 1DBGA 4U4BA 1HG8A 4W8SA 5C1CA 2O04A 2BSPA 4NK6A 1WMRA 4OZZA 2QX3A 1IB4A 3SUCA 1K5CA 4Z03A 3GQ9A 1OGMX 3T9GA 1O8FA 4XLAA 2PYGA 1OGOX 4XLCA 2VJJA 1H80A 2NT9A 4YZQA 3ZPPA 1O8KA 4XOTA 1BHEA 1CZFA 4XKWA 3GQ7A
chains in the Genus database with same CATH superfamily
2J8IA 3SZEA 5DNSA 3P4GA 4XOPA 5JLVC 2IOUG 2VFMA 1IDJA 3LYCA 3JX8A 1RWRA 3GRHA 1TYXA 1QQ1A 1AIRA 2XTYA 4OJLA 4XQFA 2NSTA 2NTPA 3JURA 2V5IA 1O8IA 2XC1A 2B0RA 2F3LA 2J8KA 1KTWA 3EQOA 4XLEA 4YDTA 2G0YA 4XLFA 3AK5A 2XT2A 4JRAC 4W8TA 4C2LA 1O88A 3BH7B 1LM1A 2BM4A 4URRA 2XTWA 4OZYA 3BH6B 2BX6A 1K4ZA 1RMGA 2PYHA 1PLUA 4EW9A 2IQ7A 2NT6A 4OJ6A 1LLWA 1K8FA 2O17A 2QXZA 2VFQA 4XONA 4Z05A 3VSUA 2X6YA 1O8JA 2INUA 4XM3A 2O6WA 2EWEA 1KCCA 1IDKA 4XORA 3PSZA 1QRBA 1O8MA 1BN8A 1EE6A 2NSPA 2YUHA 3LMWA 4YELA 3VMWA 3ML3A 4YEIA 2O1DA 3H09A 2VFNA 3GQ8A 4YZXA 2X3HA 2INVA 4OPWA 1DBOA 4XKVA 1QA2A 2XTXA 4YCQA 3ZSCA 2BM6A 4Z06A 3B8YA 4MR0A 1O8DA 1QA1A 2NTQA 1TYVA 2Z8GA 4XLHA 1OFMA 1OOCA 4W8RA 2QZAA 2ODLA 1JRGA 2W7ZA 1KCDA 5JMCB 4XN3A 4HWVA 1CLWA 3GQAA 4XR6A 3WWGA 1TYUA 3B4NA 1IA5A 1TSPA 3SQVA 4W8QA 2VBEA 3VSTA 5AMVA 4XL9A 4PMHA 4YZ0A 3SY2A 2X6XA 4MXNA 4YEJA 4XN0A 3PSSA 4YC5A 1OFEA 4U49A 1QCXA 3EQNA 3PETA 3KRGA 1QA3A 3B90A 2VBKA 1O8LA 1L1IA 1DABA 1NHCA 1EA0A 5C1EA 3UW0A 1X0CA 2NZMA 2O0WA 3NAWA 3NB2A 4OJ5A 2PECA 2UVFA 2VFPA 3DU1X 4I84A 4YFOA 1GQ8A 2UVEA 3N90A 3VMVA 3FY3A 2NTBA 4XMYA 2QY1A 1PE9A 2X6WA 4OJOA 4XNFA 2QYUA 3N6ZA 1JTAA 1WXRA 1PXZA 1O8EA 3RIQA 1QRCA 1RU4A 2VJIA 1QJVA 4KH3A 3VSVA 1KQ5A 1XG2A 4OJPA 1O8GA 1LLZA 2X85A 4V02C 3LJYA 2XT4A 2VBMA 1VBLA 3TH0A 1O8HA 1OFLA 4YZAA 4NK8A 2BM7A 4OM9A 2O0VA 4AVZA 1DBGA 4U4BA 1HG8A 1TYWA 4W8SA 5C1CA 2O04A 2BSPA 4NK6A 1WMRA 4OZZA 2QX3A 1IB4A 3SUCA 1K5CA 4Z03A 2BM5A 3GQ9A 1OGMX 3T9GA 1O8FA 4XLAA 2PYGA 1OGOX 3SYJA 1EZGA 2VJJA 4XLCA 1H80A 2NT9A 4YZQA 3ZPPA 1O8KA 2VFOA 4XOTA 1OFDA 1BHEA 1CZFA 4XKWA 1HF2A 3GQ7A
chains in the Genus database with same CATH topology
4XOPA 1IDJA 1RWRA 3GRHA 1AIRA 4OJLA 4XQFA 2NSTA 2NTPA 3JURA 1O8IA 4XLEA 1KTWA 3EQOA 4XLFA 4W8TA 4C2LA 1O88A 4URRA 4OZYA 1RMGA 2PYHA 1PLUA 4EW9A 2IQ7A 2NT6A 4OJ6A 2O17A 2QXZA 4XONA 4Z05A 3VSUA 2X6YA 1O8JA 2INUA 4XM3A 2EWEA 1KCCA 1IDKA 4XORA 1O8MA 1BN8A 1EE6A 2NSPA 3LMWA 4YELA 3VMWA 2O1DA 3GQ8A 4YZXA 2X3HA 2INVA 1DBOA 4XKVA 3ZSCA 4Z06A 3B8YA 4MR0A 1O8DA 2NTQA 2Z8GA 4XLHA 1OFMA 1OOCA 4W8RA 2ODLA 1JRGA 1KCDA 4XN3A 4HWVA 4XR6A 3GQAA 3WWGA 1IA5A 3B4NA 4W8QA 2VBEA 3VSTA 5AMVA 4XL9A 4PMHA 4YZ0A 2X6XA 4MXNA 4YEJA 4XN0A 4U49A 1QCXA 3EQNA 3KRGA 3B90A 2VBKA 1O8LA 1NHCA 5C1EA 3UW0A 1X0CA 2NZMA 2O0WA 4OJ5A 2PECA 2UVFA 4I84A 1GQ8A 2UVEA 3VMVA 3FY3A 2NTBA 4XMYA 2QY1A 1PE9A 2X6WA 4OJOA 4XNFA 1JTAA 1PXZA 1O8EA 1RU4A 2VJIA 1QJVA 3VSVA 1XG2A 4OJPA 1O8GA 2X85A 2VBMA 1VBLA 1O8HA 1OFLA 4YZAA 4NK8A 2O0VA 4AVZA 1DBGA 4U4BA 1HG8A 4W8SA 5C1CA 2O04A 2BSPA 4NK6A 1WMRA 4OZZA 2QX3A 1IB4A 3SUCA 1K5CA 4Z03A 3GQ9A 1OGMX 3T9GA 1O8FA 4XLAA 2PYGA 1OGOX 4XLCA 2VJJA 1H80A 2NT9A 4YZQA 3ZPPA 1O8KA 4XOTA 1BHEA 1CZFA 4XKWA 3GQ7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4XOP A;  1IDJ A;  1RWR A;  3GRH A;  1AIR A;  4OJL A;  4XQF A;  2NST A;  2NTP A;  3JUR A;  1O8I A;  4XLE A;  1KTW A;  3EQO A;  4XLF A;  4W8T A;  4C2L A;  1O88 A;  4URR A;  4OZY A;  1RMG A;  2PYH A;  1PLU A;  4EW9 A;  2IQ7 A;  2NT6 A;  4OJ6 A;  2O17 A;  2QXZ A;  4XON A;  4Z05 A;  3VSU A;  2X6Y A;  1O8J A;  2INU A;  4XM3 A;  2EWE A;  1KCC A;  1IDK A;  4XOR A;  1O8M A;  1BN8 A;  1EE6 A;  2NSP A;  3LMW A;  4YEL A;  3VMW A;  2O1D A;  3GQ8 A;  4YZX A;  2X3H A;  2INV A;  1DBO A;  4XKV A;  3ZSC A;  4Z06 A;  3B8Y A;  4MR0 A;  1O8D A;  2NTQ A;  2Z8G A;  4XLH A;  1OFM A;  1OOC A;  4W8R A;  2ODL A;  1JRG A;  1KCD A;  4XN3 A;  4HWV A;  4XR6 A;  3GQA A;  3WWG A;  1IA5 A;  3B4N A;  4W8Q A;  2VBE A;  3VST A;  5AMV A;  4XL9 A;  4PMH A;  4YZ0 A;  2X6X A;  4MXN A;  4YEJ A;  4XN0 A;  4U49 A;  1QCX A;  3EQN A;  3KRG A;  3B90 A;  2VBK A;  1O8L A;  1NHC A;  5C1E A;  3UW0 A;  1X0C A;  2NZM A;  2O0W A;  4OJ5 A;  2PEC A;  2UVF A;  4I84 A;  1GQ8 A;  2UVE A;  3VMV A;  3FY3 A;  2NTB A;  4XMY A;  2QY1 A;  1PE9 A;  2X6W A;  4OJO A;  4XNF A;  1JTA A;  1PXZ A;  1O8E A;  1RU4 A;  2VJI A;  1QJV A;  3VSV A;  1XG2 A;  4OJP A;  1O8G A;  2X85 A;  2VBM A;  1VBL A;  1O8H A;  1OFL A;  4YZA A;  4NK8 A;  2O0V A;  4AVZ A;  1DBG A;  4U4B A;  1HG8 A;  4W8S A;  5C1C A;  2O04 A;  2BSP A;  4NK6 A;  1WMR A;  4OZZ A;  2QX3 A;  1IB4 A;  3SUC A;  1K5C A;  4Z03 A;  3GQ9 A;  1OGM X;  3T9G A;  1O8F A;  4XLA A;  2PYG A;  1OGO X;  4XLC A;  2VJJ A;  1H80 A;  2NT9 A;  4YZQ A;  3ZPP A;  1O8K A;  4XOT A;  1BHE A;  1CZF A;  4XKW A;  3GQ7 A; 
#chains in the Genus database with same CATH topology
 2J8I A;  3SZE A;  5DNS A;  3P4G A;  4XOP A;  5JLV C;  2IOU G;  2VFM A;  1IDJ A;  3LYC A;  3JX8 A;  1RWR A;  3GRH A;  1TYX A;  1QQ1 A;  1AIR A;  2XTY A;  4OJL A;  4XQF A;  2NST A;  2NTP A;  3JUR A;  2V5I A;  1O8I A;  2XC1 A;  2B0R A;  2F3L A;  2J8K A;  1KTW A;  3EQO A;  4XLE A;  4YDT A;  2G0Y A;  4XLF A;  3AK5 A;  2XT2 A;  4JRA C;  4W8T A;  4C2L A;  1O88 A;  3BH7 B;  1LM1 A;  2BM4 A;  4URR A;  2XTW A;  4OZY A;  3BH6 B;  2BX6 A;  1K4Z A;  1RMG A;  2PYH A;  1PLU A;  4EW9 A;  2IQ7 A;  2NT6 A;  4OJ6 A;  1LLW A;  1K8F A;  2O17 A;  2QXZ A;  2VFQ A;  4XON A;  4Z05 A;  3VSU A;  2X6Y A;  1O8J A;  2INU A;  4XM3 A;  2O6W A;  2EWE A;  1KCC A;  1IDK A;  4XOR A;  3PSZ A;  1QRB A;  1O8M A;  1BN8 A;  1EE6 A;  2NSP A;  2YUH A;  3LMW A;  4YEL A;  3VMW A;  3ML3 A;  4YEI A;  2O1D A;  3H09 A;  2VFN A;  3GQ8 A;  4YZX A;  2X3H A;  2INV A;  4OPW A;  1DBO A;  4XKV A;  1QA2 A;  2XTX A;  4YCQ A;  3ZSC A;  2BM6 A;  4Z06 A;  3B8Y A;  4MR0 A;  1O8D A;  1QA1 A;  2NTQ A;  1TYV A;  2Z8G A;  4XLH A;  1OFM A;  1OOC A;  4W8R A;  2QZA A;  2ODL A;  1JRG A;  2W7Z A;  1KCD A;  5JMC B;  4XN3 A;  4HWV A;  1CLW A;  3GQA A;  4XR6 A;  3WWG A;  1TYU A;  3B4N A;  1IA5 A;  1TSP A;  3SQV A;  4W8Q A;  2VBE A;  3VST A;  5AMV A;  4XL9 A;  4PMH A;  4YZ0 A;  3SY2 A;  2X6X A;  4MXN A;  4YEJ A;  4XN0 A;  3PSS A;  4YC5 A;  1OFE A;  4U49 A;  1QCX A;  3EQN A;  3PET A;  3KRG A;  1QA3 A;  3B90 A;  2VBK A;  1O8L A;  1L1I A;  1DAB A;  1NHC A;  1EA0 A;  5C1E A;  3UW0 A;  1X0C A;  2NZM A;  2O0W A;  3NAW A;  3NB2 A;  4OJ5 A;  2PEC A;  2UVF A;  2VFP A;  3DU1 X;  4I84 A;  4YFO A;  1GQ8 A;  2UVE A;  3N90 A;  3VMV A;  3FY3 A;  2NTB A;  4XMY A;  2QY1 A;  1PE9 A;  2X6W A;  4OJO A;  4XNF A;  2QYU A;  3N6Z A;  1JTA A;  1WXR A;  1PXZ A;  1O8E A;  3RIQ A;  1QRC A;  1RU4 A;  2VJI A;  1QJV A;  4KH3 A;  3VSV A;  1KQ5 A;  1XG2 A;  4OJP A;  1O8G A;  1LLZ A;  2X85 A;  4V02 C;  3LJY A;  2XT4 A;  2VBM A;  1VBL A;  3TH0 A;  1O8H A;  1OFL A;  4YZA A;  4NK8 A;  2BM7 A;  4OM9 A;  2O0V A;  4AVZ A;  1DBG A;  4U4B A;  1HG8 A;  1TYW A;  4W8S A;  5C1C A;  2O04 A;  2BSP A;  4NK6 A;  1WMR A;  4OZZ A;  2QX3 A;  1IB4 A;  3SUC A;  1K5C A;  4Z03 A;  2BM5 A;  3GQ9 A;  1OGM X;  3T9G A;  1O8F A;  4XLA A;  2PYG A;  1OGO X;  3SYJ A;  1EZG A;  2VJJ A;  4XLC A;  1H80 A;  2NT9 A;  4YZQ A;  3ZPP A;  1O8K A;  2VFO A;  4XOT A;  1OFD A;  1BHE A;  1CZF A;  4XKW A;  1HF2 A;  3GQ7 A; 
#chains in the Genus database with same CATH homology
 4XOP A;  1IDJ A;  1RWR A;  3GRH A;  1AIR A;  4OJL A;  4XQF A;  2NST A;  2NTP A;  3JUR A;  1O8I A;  4XLE A;  1KTW A;  3EQO A;  4XLF A;  4W8T A;  4C2L A;  1O88 A;  4URR A;  4OZY A;  1RMG A;  2PYH A;  1PLU A;  4EW9 A;  2IQ7 A;  2NT6 A;  4OJ6 A;  2O17 A;  2QXZ A;  4XON A;  4Z05 A;  3VSU A;  2X6Y A;  1O8J A;  2INU A;  4XM3 A;  2EWE A;  1KCC A;  1IDK A;  4XOR A;  1O8M A;  1BN8 A;  1EE6 A;  2NSP A;  3LMW A;  4YEL A;  3VMW A;  2O1D A;  3GQ8 A;  4YZX A;  2X3H A;  2INV A;  1DBO A;  4XKV A;  3ZSC A;  4Z06 A;  3B8Y A;  4MR0 A;  1O8D A;  2NTQ A;  2Z8G A;  4XLH A;  1OFM A;  1OOC A;  4W8R A;  2ODL A;  1JRG A;  1KCD A;  4XN3 A;  4HWV A;  4XR6 A;  3GQA A;  3WWG A;  1IA5 A;  3B4N A;  4W8Q A;  2VBE A;  3VST A;  5AMV A;  4XL9 A;  4PMH A;  4YZ0 A;  2X6X A;  4MXN A;  4YEJ A;  4XN0 A;  4U49 A;  1QCX A;  3EQN A;  3KRG A;  3B90 A;  2VBK A;  1O8L A;  1NHC A;  5C1E A;  3UW0 A;  1X0C A;  2NZM A;  2O0W A;  4OJ5 A;  2PEC A;  2UVF A;  4I84 A;  1GQ8 A;  2UVE A;  3VMV A;  3FY3 A;  2NTB A;  4XMY A;  2QY1 A;  1PE9 A;  2X6W A;  4OJO A;  4XNF A;  1JTA A;  1PXZ A;  1O8E A;  1RU4 A;  2VJI A;  1QJV A;  3VSV A;  1XG2 A;  4OJP A;  1O8G A;  2X85 A;  2VBM A;  1VBL A;  1O8H A;  1OFL A;  4YZA A;  4NK8 A;  2O0V A;  4AVZ A;  1DBG A;  4U4B A;  1HG8 A;  4W8S A;  5C1C A;  2O04 A;  2BSP A;  4NK6 A;  1WMR A;  4OZZ A;  2QX3 A;  1IB4 A;  3SUC A;  1K5C A;  4Z03 A;  3GQ9 A;  1OGM X;  3T9G A;  1O8F A;  4XLA A;  2PYG A;  1OGO X;  4XLC A;  2VJJ A;  1H80 A;  2NT9 A;  4YZQ A;  3ZPP A;  1O8K A;  4XOT A;  1BHE A;  1CZF A;  4XKW A;  3GQ7 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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