2O1DA

Pectate lyase bound to trisaccharide
Total Genus 159
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
159
sequence length
399
structure length
399
Chain Sequence
ADLGHQTLGSNDGWGAYSTGTTGGSKASSSNVYTVSNRNQLVSALGKETNTTPKIIYIKGTIDMNVDDNLKPLGLNDYKDPEYDLDKYLKAYDPSTWGKKEPSGTQEEARARSQKNQKARVMVDIPANTTIVGSGTNAKVVGGNFQIKSDNVIIRNIEFQDAYDYFPQWDPTDGSSGNWNSQYDNITINGGTHIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITMSYNYYHDHDKSSIFGSSDSKTSDDGKLKITLHHNRYKNIVQAAPRVRFGQVHVYNNYYEGSTSSSSYPFSYAWGIGKSSKIYAQNNVIDVPGLSAAKTISVFSGGTALYDSGTLLNGTQINASAANGLSSSVGWTPSLHGSIDASANVKSNVINQAGAGKLN
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Structural insights into substrate specificity and the anti beta-elimination mechanism of pectate lyase.
pubmed doi rcsb
source organism Bacillus subtilis
molecule tags Lyase
molecule keywords Pectate lyase
total genus 159
structure length 399
sequence length 399
ec nomenclature ec 4.2.2.2: Pectate lyase.
pdb deposition date 2006-11-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00544 Pec_lyase_C Pectate lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 2o1dA00
1O8LA 3GQ8A 2NZMA 4MR0A 1PLUA 4OJ6A 2UVFA 3LMWA 1GQ8A 1AIRA 1O8EA 2NTQA 1O8MA 4XLHA 4YZAA 3JURA 1X0CA 4OJ5A 4XKVA 4XLCA 1BN8A 4YEJA 2QXZA 4XONA 4NK6A 1KCDA 2PECA 1O8IA 1O8FA 2X6WA 2NT6A 3VSVA 4XLAA 3B8YA 1RMGA 1OFMA 1KTWA 1OOCA 2UVEA 4OZYA 4YZQA 4AVZA 2Z8GA 2X85A 2INUA 1VBLA 2X6YA 4OJPA 4C2LA 3EQNA 2VBKA 4NK8A 4XLFA 1CZFA 4Z06A 1IB4A 2IQ7A 4XNFA 3VMVA 2PYGA 3ZSCA 1QJVA 2NSTA 1K5CA 4XN0A 4EW9A 4W8RA 4YZXA 1O8DA 3VMWA 1RWRA 2X3HA 2PYHA 3EQOA 3GQ9A 4W8QA 1JTAA 1DBOA 1XG2A 1IDJA 2X6XA 3VSTA 3B90A 1JRGA 2INVA 2O0WA 1OGMX 1OGOX 1BHEA 1O8KA 2NSPA 4I84A 4OJOA 5C1EA 3KRGA 2NTBA 3GQAA 1PE9A 2O17A 4XOPA 4HWVA 4XM3A 1O88A 4XR6A 3GQ7A 2O1DA 4XQFA 1HG8A 1WMRA 1OFLA 2ODLA 4XN3A 4W8SA 1NHCA 1IDKA 1PXZA 2NT9A 2O04A 2VBMA 2VBEA 4XORA 3WWGA 1H80A 1O8GA 2NTPA 3UW0A 2BSPA 3GRHA 4YZ0A 1IA5A 1RU4A 4Z03A 3ZPPA 3B4NA 2QY1A 5C1CA 2O0VA 2QX3A 1O8JA 4OJLA 4PMHA 2VJIA 4OZZA 4W8TA 4U49A 4Z05A 4URRA 3VSUA 3FY3A 5AMVA 3SUCA 4XL9A 3T9GA 4MXNA 4XMYA 1EE6A 1O8HA 1DBGA 2VJJA 1KCCA 1QCXA 4YELA 4XKWA 2EWEA 4XOTA 4XLEA 4U4BA
chains in the Genus database with same CATH superfamily
1O8LA 3GQ8A 2NZMA 4MR0A 1PLUA 4OJ6A 2UVFA 3PSZA 2BM6A 3LMWA 3N6ZA 1GQ8A 1AIRA 1O8EA 1TYVA 2NTQA 5JMCB 1O8MA 4XLHA 2F3LA 4YZAA 3JURA 1KQ5A 1X0CA 4OJ5A 4XKVA 4XLCA 2J8KA 2O6WA 1BN8A 4YEJA 2QXZA 4XONA 4NK6A 3SQVA 2PECA 1KCDA 3AK5A 1O8IA 3SZEA 1K8FA 1LLWA 2YUHA 1O8FA 2X6WA 2NT6A 3VSVA 4XLAA 3BH7B 3B8YA 1RMGA 1LM1A 4JRAC 1OFMA 1KTWA 1OOCA 2UVEA 2VFNA 1WXRA 2IOUG 2QZAA 4OZYA 4YZQA 4AVZA 2Z8GA 2J8IA 2X85A 2INUA 1VBLA 1OFDA 2X6YA 4OJPA 3EQNA 4C2LA 1TSPA 2VBKA 2BM5A 4NK8A 4XLFA 1CZFA 2BX6A 4Z06A 1IB4A 3SY2A 1EA0A 2IQ7A 4XNFA 2VFPA 3NAWA 3VMVA 2PYGA 3ZSCA 1QJVA 2NSTA 4YCQA 4KH3A 4YC5A 1K5CA 2W7ZA 1QA3A 4XN0A 4EW9A 4W8RA 3P4GA 2BM4A 4YZXA 4OPWA 1O8DA 3H09A 2XT2A 4YFOA 1CLWA 4YDTA 3VMWA 1L1IA 1RWRA 2X3HA 2PYHA 3EQOA 1QQ1A 3GQ9A 4W8QA 1JTAA 1DBOA 1XG2A 1IDJA 2VFMA 2X6XA 3VSTA 3B90A 1JRGA 2INVA 2O0WA 1OGMX 1OGOX 2V5IA 1BHEA 1O8KA 2NSPA 2XTXA 4I84A 4OJOA 5C1EA 2VFOA 1QRBA 3KRGA 2NTBA 3GQAA 1PE9A 2O17A 1QA2A 4XOPA 4HWVA 2XT4A 4XM3A 5JLVC 1QRCA 1TYWA 1O88A 2QYUA 4XR6A 2G0YA 2XC1A 3GQ7A 2O1DA 4XQFA 2XTYA 3TH0A 1HG8A 1WMRA 1OFLA 2ODLA 4XN3A 4W8SA 1NHCA 1IDKA 1PXZA 2NT9A 2O04A 2VBMA 2VBEA 3DU1X 4XORA 3WWGA 1H80A 1O8GA 3RIQA 2NTPA 3UW0A 2BSPA 3GRHA 4YZ0A 3SYJA 1RU4A 4Z03A 1IA5A 2B0RA 3N90A 3ZPPA 3B4NA 2QY1A 5C1CA 2O0VA 2VFQA 2QX3A 1TYUA 1O8JA 1QA1A 4OJLA 4PMHA 1OFEA 2VJIA 4OZZA 4U49A 4W8TA 4YEIA 1TYXA 4Z05A 4URRA 3VSUA 3FY3A 2XTWA 5AMVA 3SUCA 4V02C 4XL9A 3T9GA 4MXNA 4XMYA 4OM9A 3PSSA 5DNSA 1EE6A 1O8HA 1DBGA 1HF2A 2BM7A 3LJYA 3ML3A 3NB2A 1LLZA 1EZGA 1K4ZA 2VJJA 1KCCA 3PETA 3BH6B 1QCXA 4YELA 3JX8A 4XKWA 2EWEA 3LYCA 1DABA 4XOTA 4XLEA 4U4BA
chains in the Genus database with same CATH topology
1O8LA 3GQ8A 2NZMA 4MR0A 1PLUA 4OJ6A 2UVFA 3LMWA 1GQ8A 1AIRA 1O8EA 2NTQA 1O8MA 4XLHA 4YZAA 3JURA 1X0CA 4OJ5A 4XKVA 4XLCA 1BN8A 4YEJA 2QXZA 4XONA 4NK6A 1KCDA 2PECA 1O8IA 1O8FA 2X6WA 2NT6A 3VSVA 4XLAA 3B8YA 1RMGA 1OFMA 1KTWA 1OOCA 2UVEA 4OZYA 4YZQA 4AVZA 2Z8GA 2X85A 2INUA 1VBLA 2X6YA 4OJPA 4C2LA 3EQNA 2VBKA 4NK8A 4XLFA 1CZFA 4Z06A 1IB4A 2IQ7A 4XNFA 3VMVA 2PYGA 3ZSCA 1QJVA 2NSTA 1K5CA 4XN0A 4EW9A 4W8RA 4YZXA 1O8DA 3VMWA 1RWRA 2X3HA 2PYHA 3EQOA 3GQ9A 4W8QA 1JTAA 1DBOA 1XG2A 1IDJA 2X6XA 3VSTA 3B90A 1JRGA 2INVA 2O0WA 1OGMX 1OGOX 1BHEA 1O8KA 2NSPA 4I84A 4OJOA 5C1EA 3KRGA 2NTBA 3GQAA 1PE9A 2O17A 4XOPA 4HWVA 4XM3A 1O88A 4XR6A 3GQ7A 2O1DA 4XQFA 1HG8A 1WMRA 1OFLA 2ODLA 4XN3A 4W8SA 1NHCA 1IDKA 1PXZA 2NT9A 2O04A 2VBMA 2VBEA 4XORA 3WWGA 1H80A 1O8GA 2NTPA 3UW0A 2BSPA 3GRHA 4YZ0A 1IA5A 1RU4A 4Z03A 3ZPPA 3B4NA 2QY1A 5C1CA 2O0VA 2QX3A 1O8JA 4OJLA 4PMHA 2VJIA 4OZZA 4W8TA 4U49A 4Z05A 4URRA 3VSUA 3FY3A 5AMVA 3SUCA 4XL9A 3T9GA 4MXNA 4XMYA 1EE6A 1O8HA 1DBGA 2VJJA 1KCCA 1QCXA 4YELA 4XKWA 2EWEA 4XOTA 4XLEA 4U4BA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1O8L A;  3GQ8 A;  2NZM A;  4MR0 A;  1PLU A;  4OJ6 A;  2UVF A;  3LMW A;  1GQ8 A;  1AIR A;  1O8E A;  2NTQ A;  1O8M A;  4XLH A;  4YZA A;  3JUR A;  1X0C A;  4OJ5 A;  4XKV A;  4XLC A;  1BN8 A;  4YEJ A;  2QXZ A;  4XON A;  4NK6 A;  1KCD A;  2PEC A;  1O8I A;  1O8F A;  2X6W A;  2NT6 A;  3VSV A;  4XLA A;  3B8Y A;  1RMG A;  1OFM A;  1KTW A;  1OOC A;  2UVE A;  4OZY A;  4YZQ A;  4AVZ A;  2Z8G A;  2X85 A;  2INU A;  1VBL A;  2X6Y A;  4OJP A;  4C2L A;  3EQN A;  2VBK A;  4NK8 A;  4XLF A;  1CZF A;  4Z06 A;  1IB4 A;  2IQ7 A;  4XNF A;  3VMV A;  2PYG A;  3ZSC A;  1QJV A;  2NST A;  1K5C A;  4XN0 A;  4EW9 A;  4W8R A;  4YZX A;  1O8D A;  3VMW A;  1RWR A;  2X3H A;  2PYH A;  3EQO A;  3GQ9 A;  4W8Q A;  1JTA A;  1DBO A;  1XG2 A;  1IDJ A;  2X6X A;  3VST A;  3B90 A;  1JRG A;  2INV A;  2O0W A;  1OGM X;  1OGO X;  1BHE A;  1O8K A;  2NSP A;  4I84 A;  4OJO A;  5C1E A;  3KRG A;  2NTB A;  3GQA A;  1PE9 A;  2O17 A;  4XOP A;  4HWV A;  4XM3 A;  1O88 A;  4XR6 A;  3GQ7 A;  2O1D A;  4XQF A;  1HG8 A;  1WMR A;  1OFL A;  2ODL A;  4XN3 A;  4W8S A;  1NHC A;  1IDK A;  1PXZ A;  2NT9 A;  2O04 A;  2VBM A;  2VBE A;  4XOR A;  3WWG A;  1H80 A;  1O8G A;  2NTP A;  3UW0 A;  2BSP A;  3GRH A;  4YZ0 A;  1IA5 A;  1RU4 A;  4Z03 A;  3ZPP A;  3B4N A;  2QY1 A;  5C1C A;  2O0V A;  2QX3 A;  1O8J A;  4OJL A;  4PMH A;  2VJI A;  4OZZ A;  4W8T A;  4U49 A;  4Z05 A;  4URR A;  3VSU A;  3FY3 A;  5AMV A;  3SUC A;  4XL9 A;  3T9G A;  4MXN A;  4XMY A;  1EE6 A;  1O8H A;  1DBG A;  2VJJ A;  1KCC A;  1QCX A;  4YEL A;  4XKW A;  2EWE A;  4XOT A;  4XLE A;  4U4B A; 
#chains in the Genus database with same CATH topology
 1O8L A;  3GQ8 A;  2NZM A;  4MR0 A;  1PLU A;  4OJ6 A;  2UVF A;  3PSZ A;  2BM6 A;  3LMW A;  3N6Z A;  1GQ8 A;  1AIR A;  1O8E A;  1TYV A;  2NTQ A;  5JMC B;  1O8M A;  4XLH A;  2F3L A;  4YZA A;  3JUR A;  1KQ5 A;  1X0C A;  4OJ5 A;  4XKV A;  4XLC A;  2J8K A;  2O6W A;  1BN8 A;  4YEJ A;  2QXZ A;  4XON A;  4NK6 A;  3SQV A;  2PEC A;  1KCD A;  3AK5 A;  1O8I A;  3SZE A;  1K8F A;  1LLW A;  2YUH A;  1O8F A;  2X6W A;  2NT6 A;  3VSV A;  4XLA A;  3BH7 B;  3B8Y A;  1RMG A;  1LM1 A;  4JRA C;  1OFM A;  1KTW A;  1OOC A;  2UVE A;  2VFN A;  1WXR A;  2IOU G;  2QZA A;  4OZY A;  4YZQ A;  4AVZ A;  2Z8G A;  2J8I A;  2X85 A;  2INU A;  1VBL A;  1OFD A;  2X6Y A;  4OJP A;  3EQN A;  4C2L A;  1TSP A;  2VBK A;  2BM5 A;  4NK8 A;  4XLF A;  1CZF A;  2BX6 A;  4Z06 A;  1IB4 A;  3SY2 A;  1EA0 A;  2IQ7 A;  4XNF A;  2VFP A;  3NAW A;  3VMV A;  2PYG A;  3ZSC A;  1QJV A;  2NST A;  4YCQ A;  4KH3 A;  4YC5 A;  1K5C A;  2W7Z A;  1QA3 A;  4XN0 A;  4EW9 A;  4W8R A;  3P4G A;  2BM4 A;  4YZX A;  4OPW A;  1O8D A;  3H09 A;  2XT2 A;  4YFO A;  1CLW A;  4YDT A;  3VMW A;  1L1I A;  1RWR A;  2X3H A;  2PYH A;  3EQO A;  1QQ1 A;  3GQ9 A;  4W8Q A;  1JTA A;  1DBO A;  1XG2 A;  1IDJ A;  2VFM A;  2X6X A;  3VST A;  3B90 A;  1JRG A;  2INV A;  2O0W A;  1OGM X;  1OGO X;  2V5I A;  1BHE A;  1O8K A;  2NSP A;  2XTX A;  4I84 A;  4OJO A;  5C1E A;  2VFO A;  1QRB A;  3KRG A;  2NTB A;  3GQA A;  1PE9 A;  2O17 A;  1QA2 A;  4XOP A;  4HWV A;  2XT4 A;  4XM3 A;  5JLV C;  1QRC A;  1TYW A;  1O88 A;  2QYU A;  4XR6 A;  2G0Y A;  2XC1 A;  3GQ7 A;  2O1D A;  4XQF A;  2XTY A;  3TH0 A;  1HG8 A;  1WMR A;  1OFL A;  2ODL A;  4XN3 A;  4W8S A;  1NHC A;  1IDK A;  1PXZ A;  2NT9 A;  2O04 A;  2VBM A;  2VBE A;  3DU1 X;  4XOR A;  3WWG A;  1H80 A;  1O8G A;  3RIQ A;  2NTP A;  3UW0 A;  2BSP A;  3GRH A;  4YZ0 A;  3SYJ A;  1RU4 A;  4Z03 A;  1IA5 A;  2B0R A;  3N90 A;  3ZPP A;  3B4N A;  2QY1 A;  5C1C A;  2O0V A;  2VFQ A;  2QX3 A;  1TYU A;  1O8J A;  1QA1 A;  4OJL A;  4PMH A;  1OFE A;  2VJI A;  4OZZ A;  4U49 A;  4W8T A;  4YEI A;  1TYX A;  4Z05 A;  4URR A;  3VSU A;  3FY3 A;  2XTW A;  5AMV A;  3SUC A;  4V02 C;  4XL9 A;  3T9G A;  4MXN A;  4XMY A;  4OM9 A;  3PSS A;  5DNS A;  1EE6 A;  1O8H A;  1DBG A;  1HF2 A;  2BM7 A;  3LJY A;  3ML3 A;  3NB2 A;  1LLZ A;  1EZG A;  1K4Z A;  2VJJ A;  1KCC A;  3PET A;  3BH6 B;  1QCX A;  4YEL A;  3JX8 A;  4XKW A;  2EWE A;  3LYC A;  1DAB A;  4XOT A;  4XLE A;  4U4B A; 
#chains in the Genus database with same CATH homology
 1O8L A;  3GQ8 A;  2NZM A;  4MR0 A;  1PLU A;  4OJ6 A;  2UVF A;  3LMW A;  1GQ8 A;  1AIR A;  1O8E A;  2NTQ A;  1O8M A;  4XLH A;  4YZA A;  3JUR A;  1X0C A;  4OJ5 A;  4XKV A;  4XLC A;  1BN8 A;  4YEJ A;  2QXZ A;  4XON A;  4NK6 A;  1KCD A;  2PEC A;  1O8I A;  1O8F A;  2X6W A;  2NT6 A;  3VSV A;  4XLA A;  3B8Y A;  1RMG A;  1OFM A;  1KTW A;  1OOC A;  2UVE A;  4OZY A;  4YZQ A;  4AVZ A;  2Z8G A;  2X85 A;  2INU A;  1VBL A;  2X6Y A;  4OJP A;  4C2L A;  3EQN A;  2VBK A;  4NK8 A;  4XLF A;  1CZF A;  4Z06 A;  1IB4 A;  2IQ7 A;  4XNF A;  3VMV A;  2PYG A;  3ZSC A;  1QJV A;  2NST A;  1K5C A;  4XN0 A;  4EW9 A;  4W8R A;  4YZX A;  1O8D A;  3VMW A;  1RWR A;  2X3H A;  2PYH A;  3EQO A;  3GQ9 A;  4W8Q A;  1JTA A;  1DBO A;  1XG2 A;  1IDJ A;  2X6X A;  3VST A;  3B90 A;  1JRG A;  2INV A;  2O0W A;  1OGM X;  1OGO X;  1BHE A;  1O8K A;  2NSP A;  4I84 A;  4OJO A;  5C1E A;  3KRG A;  2NTB A;  3GQA A;  1PE9 A;  2O17 A;  4XOP A;  4HWV A;  4XM3 A;  1O88 A;  4XR6 A;  3GQ7 A;  2O1D A;  4XQF A;  1HG8 A;  1WMR A;  1OFL A;  2ODL A;  4XN3 A;  4W8S A;  1NHC A;  1IDK A;  1PXZ A;  2NT9 A;  2O04 A;  2VBM A;  2VBE A;  4XOR A;  3WWG A;  1H80 A;  1O8G A;  2NTP A;  3UW0 A;  2BSP A;  3GRH A;  4YZ0 A;  1IA5 A;  1RU4 A;  4Z03 A;  3ZPP A;  3B4N A;  2QY1 A;  5C1C A;  2O0V A;  2QX3 A;  1O8J A;  4OJL A;  4PMH A;  2VJI A;  4OZZ A;  4W8T A;  4U49 A;  4Z05 A;  4URR A;  3VSU A;  3FY3 A;  5AMV A;  3SUC A;  4XL9 A;  3T9G A;  4MXN A;  4XMY A;  1EE6 A;  1O8H A;  1DBG A;  2VJJ A;  1KCC A;  1QCX A;  4YEL A;  4XKW A;  2EWE A;  4XOT A;  4XLE A;  4U4B A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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