2O1DA

Pectate lyase bound to trisaccharide
Total Genus 159
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
159
sequence length
399
structure length
399
Chain Sequence
ADLGHQTLGSNDGWGAYSTGTTGGSKASSSNVYTVSNRNQLVSALGKETNTTPKIIYIKGTIDMNVDDNLKPLGLNDYKDPEYDLDKYLKAYDPSTWGKKEPSGTQEEARARSQKNQKARVMVDIPANTTIVGSGTNAKVVGGNFQIKSDNVIIRNIEFQDAYDYFPQWDPTDGSSGNWNSQYDNITINGGTHIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITMSYNYYHDHDKSSIFGSSDSKTSDDGKLKITLHHNRYKNIVQAAPRVRFGQVHVYNNYYEGSTSSSSYPFSYAWGIGKSSKIYAQNNVIDVPGLSAAKTISVFSGGTALYDSGTLLNGTQINASAANGLSSSVGWTPSLHGSIDASANVKSNVINQAGAGKLN
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Pectate lyase
publication title Structural insights into substrate specificity and the anti beta-elimination mechanism of pectate lyase.
pubmed doi rcsb
source organism Bacillus subtilis
molecule tags Lyase
total genus 159
structure length 399
sequence length 399
ec nomenclature ec 4.2.2.2: Pectate lyase.
pdb deposition date 2006-11-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00544 Pec_lyase_C Pectate lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 2o1dA00
4PMHA 3JURA 1O8KA 2QY1A 4I84A 1O88A 1CZFA 3EQNA 2NZMA 2NSTA 4U49A 3UW0A 3LMWA 2QX3A 3VMVA 2X85A 4YZQA 1RWRA 3GQAA 1QCXA 3SUCA 2X6XA 3VMWA 4XN0A 4W8TA 1BHEA 1O8IA 1AIRA 2INVA 2VJJA 4MR0A 4EW9A 4YEJA 4XN3A 4OJ5A 2QXZA 1EE6A 4OJ6A 4XLFA 3VSTA 4YELA 4XKWA 5C1EA 2VBEA 4AVZA 1IA5A 2O0VA 4URRA 4XR6A 1O8EA 1WMRA 5C1CA 2NTPA 1RMGA 1O8MA 2IQ7A 2X6YA 1PE9A 3B90A 1PXZA 3GRHA 1OGOX 5AMVA 3WWGA 1O8GA 3GQ9A 1K5CA 3EQOA 1VBLA 2X6WA 1IDJA 1QJVA 2X3HA 4NK8A 4OJPA 1KCCA 1O8LA 2O0WA 1PLUA 4MXNA 4XNFA 1KTWA 1DBGA 1JTAA 2NTBA 3GQ7A 3T9GA 1O8JA 1JRGA 2VJIA 2NSPA 4XLEA 1OFLA 2BSPA 2EWEA 4XLCA 1BN8A 1OGMX 2PYGA 2NTQA 1OOCA 1O8FA 4OJOA 4XQFA 4YZAA 4Z05A 4OZZA 1XG2A 2INUA 4OJLA 4XORA 2PECA 4OZYA 1HG8A 1IDKA 4Z03A 3VSUA 1OFMA 1O8HA 4U4BA 4XMYA 2ODLA 1IB4A 1H80A 3B8YA 4W8SA 2NT9A 3GQ8A 4XONA 4Z06A 4XLHA 4XOTA 2NT6A 1KCDA 4XOPA 1GQ8A 2VBKA 3FY3A 4W8RA 4XLAA 2UVEA 2Z8GA 4YZXA 1X0CA 3KRGA 2O1DA 2O17A 4W8QA 2PYHA 4C2LA 3VSVA 1O8DA 1NHCA 3ZPPA 4XKVA 2O04A 2VBMA 4YZ0A 1DBOA 3B4NA 3ZSCA 4NK6A 4XL9A 4HWVA 1RU4A 4XM3A 2UVFA
chains in the Genus database with same CATH superfamily
4PMHA 3SZEA 3JURA 1O8KA 2QY1A 3NAWA 1O88A 4I84A 1CZFA 3ML3A 1EA0A 2W7ZA 3EQNA 1OFDA 2NZMA 2NSTA 2QYUA 4U49A 3UW0A 3LMWA 3NB2A 2QX3A 3VMVA 2X85A 1QA1A 4YZQA 1RWRA 2G0YA 1L1IA 3GQAA 1QCXA 3SUCA 2X6XA 4OM9A 2XTYA 3VMWA 4XN0A 2XT4A 4JRAC 1DABA 2UVFA 2J8KA 4W8TA 1BHEA 4YEIA 1O8IA 1AIRA 2INVA 2VJJA 4MR0A 3BH7B 4YEJA 4EW9A 1QRBA 1QRCA 4XN3A 4OJ5A 1OFEA 1EE6A 2QXZA 1TSPA 4OJ6A 1TYWA 4YDTA 4XLFA 3DU1X 3VSTA 4YELA 4XKWA 5C1EA 2VBEA 4AVZA 1IA5A 2O0VA 4URRA 1K4ZA 2BM7A 4XR6A 1O8EA 1WMRA 2VFOA 3PETA 2XT2A 5C1CA 2NTPA 1RMGA 1O8MA 2IQ7A 1KQ5A 2X6YA 1PE9A 1TYXA 3H09A 3B90A 2VFNA 1PXZA 3GRHA 1OGOX 5AMVA 3WWGA 1HF2A 1O8GA 3GQ9A 3JX8A 1K5CA 3EQOA 3AK5A 2O6WA 2B0RA 3SQVA 1VBLA 2X6WA 1IDJA 1QJVA 2BM5A 2X3HA 4NK8A 3BH6B 4OJPA 1KCCA 1O8LA 3SYJA 2O0WA 1PLUA 2BM6A 4MXNA 4XNFA 1KTWA 1LLWA 1DBGA 1JTAA 4YCQA 3N6ZA 2NTBA 3GQ7A 3T9GA 5JMCB 2VFQA 1O8JA 2VJIA 2NSPA 4XLEA 1OFLA 2BSPA 2EWEA 4YFOA 4XLCA 2J8IA 1BN8A 1OGMX 2PYGA 2NTQA 1OOCA 4V02C 3SY2A 1O8FA 4OJOA 4OPWA 4XQFA 1QA2A 1TYVA 4YZAA 4Z05A 4OZZA 1XG2A 2INUA 4OJLA 4XORA 2PECA 4OZYA 1HG8A 1IDKA 1K8FA 2XTXA 3TH0A 1WXRA 4Z03A 3VSUA 1OFMA 1O8HA 2V5IA 3N90A 4YC5A 2VFMA 3PSSA 2YUHA 3LJYA 4U4BA 4XMYA 2ODLA 2F3LA 3P4GA 1IB4A 1H80A 3B8YA 2QZAA 4W8SA 2NT9A 3GQ8A 4XONA 4Z06A 2XC1A 2BX6A 4XLHA 2NT6A 4XOTA 4XOPA 1KCDA 5DNSA 3RIQA 3LYCA 1GQ8A 2VBKA 3FY3A 2BM4A 4W8RA 4XLAA 2UVEA 4KH3A 1CLWA 2Z8GA 4YZXA 1X0CA 1LM1A 2O1DA 3KRGA 2O17A 4W8QA 1EZGA 2XTWA 2PYHA 1QQ1A 5JLVC 1LLZA 4C2LA 3VSVA 1O8DA 1NHCA 3ZPPA 4XKVA 2VFPA 2O04A 2VBMA 4YZ0A 3PSZA 1QA3A 1DBOA 2IOUG 3B4NA 1TYUA 3ZSCA 4NK6A 4XL9A 4HWVA 1RU4A 4XM3A 1JRGA
chains in the Genus database with same CATH topology
4PMHA 3JURA 1O8KA 2QY1A 4I84A 1O88A 1CZFA 3EQNA 2NZMA 2NSTA 4U49A 3UW0A 3LMWA 2QX3A 3VMVA 2X85A 4YZQA 1RWRA 3GQAA 1QCXA 3SUCA 2X6XA 3VMWA 4XN0A 4W8TA 1BHEA 1O8IA 1AIRA 2INVA 2VJJA 4MR0A 4EW9A 4YEJA 4XN3A 4OJ5A 2QXZA 1EE6A 4OJ6A 4XLFA 3VSTA 4YELA 4XKWA 5C1EA 2VBEA 4AVZA 1IA5A 2O0VA 4URRA 4XR6A 1O8EA 1WMRA 5C1CA 2NTPA 1RMGA 1O8MA 2IQ7A 2X6YA 1PE9A 3B90A 1PXZA 3GRHA 1OGOX 5AMVA 3WWGA 1O8GA 3GQ9A 1K5CA 3EQOA 1VBLA 2X6WA 1IDJA 1QJVA 2X3HA 4NK8A 4OJPA 1KCCA 1O8LA 2O0WA 1PLUA 4MXNA 4XNFA 1KTWA 1DBGA 1JTAA 2NTBA 3GQ7A 3T9GA 1O8JA 1JRGA 2VJIA 2NSPA 4XLEA 1OFLA 2BSPA 2EWEA 4XLCA 1BN8A 1OGMX 2PYGA 2NTQA 1OOCA 1O8FA 4OJOA 4XQFA 4YZAA 4Z05A 4OZZA 1XG2A 2INUA 4OJLA 4XORA 2PECA 4OZYA 1HG8A 1IDKA 4Z03A 3VSUA 1OFMA 1O8HA 4U4BA 4XMYA 2ODLA 1IB4A 1H80A 3B8YA 4W8SA 2NT9A 3GQ8A 4XONA 4Z06A 4XLHA 4XOTA 2NT6A 1KCDA 4XOPA 1GQ8A 2VBKA 3FY3A 4W8RA 4XLAA 2UVEA 2Z8GA 4YZXA 1X0CA 3KRGA 2O1DA 2O17A 4W8QA 2PYHA 4C2LA 3VSVA 1O8DA 1NHCA 3ZPPA 4XKVA 2O04A 2VBMA 4YZ0A 1DBOA 3B4NA 3ZSCA 4NK6A 4XL9A 4HWVA 1RU4A 4XM3A 2UVFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4PMH A;  3JUR A;  1O8K A;  2QY1 A;  4I84 A;  1O88 A;  1CZF A;  3EQN A;  2NZM A;  2NST A;  4U49 A;  3UW0 A;  3LMW A;  2QX3 A;  3VMV A;  2X85 A;  4YZQ A;  1RWR A;  3GQA A;  1QCX A;  3SUC A;  2X6X A;  3VMW A;  4XN0 A;  4W8T A;  1BHE A;  1O8I A;  1AIR A;  2INV A;  2VJJ A;  4MR0 A;  4EW9 A;  4YEJ A;  4XN3 A;  4OJ5 A;  2QXZ A;  1EE6 A;  4OJ6 A;  4XLF A;  3VST A;  4YEL A;  4XKW A;  5C1E A;  2VBE A;  4AVZ A;  1IA5 A;  2O0V A;  4URR A;  4XR6 A;  1O8E A;  1WMR A;  5C1C A;  2NTP A;  1RMG A;  1O8M A;  2IQ7 A;  2X6Y A;  1PE9 A;  3B90 A;  1PXZ A;  3GRH A;  1OGO X;  5AMV A;  3WWG A;  1O8G A;  3GQ9 A;  1K5C A;  3EQO A;  1VBL A;  2X6W A;  1IDJ A;  1QJV A;  2X3H A;  4NK8 A;  4OJP A;  1KCC A;  1O8L A;  2O0W A;  1PLU A;  4MXN A;  4XNF A;  1KTW A;  1DBG A;  1JTA A;  2NTB A;  3GQ7 A;  3T9G A;  1O8J A;  1JRG A;  2VJI A;  2NSP A;  4XLE A;  1OFL A;  2BSP A;  2EWE A;  4XLC A;  1BN8 A;  1OGM X;  2PYG A;  2NTQ A;  1OOC A;  1O8F A;  4OJO A;  4XQF A;  4YZA A;  4Z05 A;  4OZZ A;  1XG2 A;  2INU A;  4OJL A;  4XOR A;  2PEC A;  4OZY A;  1HG8 A;  1IDK A;  4Z03 A;  3VSU A;  1OFM A;  1O8H A;  4U4B A;  4XMY A;  2ODL A;  1IB4 A;  1H80 A;  3B8Y A;  4W8S A;  2NT9 A;  3GQ8 A;  4XON A;  4Z06 A;  4XLH A;  4XOT A;  2NT6 A;  1KCD A;  4XOP A;  1GQ8 A;  2VBK A;  3FY3 A;  4W8R A;  4XLA A;  2UVE A;  2Z8G A;  4YZX A;  1X0C A;  3KRG A;  2O1D A;  2O17 A;  4W8Q A;  2PYH A;  4C2L A;  3VSV A;  1O8D A;  1NHC A;  3ZPP A;  4XKV A;  2O04 A;  2VBM A;  4YZ0 A;  1DBO A;  3B4N A;  3ZSC A;  4NK6 A;  4XL9 A;  4HWV A;  1RU4 A;  4XM3 A;  2UVF A; 
#chains in the Genus database with same CATH topology
 4PMH A;  3SZE A;  3JUR A;  1O8K A;  2QY1 A;  3NAW A;  1O88 A;  4I84 A;  1CZF A;  3ML3 A;  1EA0 A;  2W7Z A;  3EQN A;  1OFD A;  2NZM A;  2NST A;  2QYU A;  4U49 A;  3UW0 A;  3LMW A;  3NB2 A;  2QX3 A;  3VMV A;  2X85 A;  1QA1 A;  4YZQ A;  1RWR A;  2G0Y A;  1L1I A;  3GQA A;  1QCX A;  3SUC A;  2X6X A;  4OM9 A;  2XTY A;  3VMW A;  4XN0 A;  2XT4 A;  4JRA C;  1DAB A;  2UVF A;  2J8K A;  4W8T A;  1BHE A;  4YEI A;  1O8I A;  1AIR A;  2INV A;  2VJJ A;  4MR0 A;  3BH7 B;  4YEJ A;  4EW9 A;  1QRB A;  1QRC A;  4XN3 A;  4OJ5 A;  1OFE A;  1EE6 A;  2QXZ A;  1TSP A;  4OJ6 A;  1TYW A;  4YDT A;  4XLF A;  3DU1 X;  3VST A;  4YEL A;  4XKW A;  5C1E A;  2VBE A;  4AVZ A;  1IA5 A;  2O0V A;  4URR A;  1K4Z A;  2BM7 A;  4XR6 A;  1O8E A;  1WMR A;  2VFO A;  3PET A;  2XT2 A;  5C1C A;  2NTP A;  1RMG A;  1O8M A;  2IQ7 A;  1KQ5 A;  2X6Y A;  1PE9 A;  1TYX A;  3H09 A;  3B90 A;  2VFN A;  1PXZ A;  3GRH A;  1OGO X;  5AMV A;  3WWG A;  1HF2 A;  1O8G A;  3GQ9 A;  3JX8 A;  1K5C A;  3EQO A;  3AK5 A;  2O6W A;  2B0R A;  3SQV A;  1VBL A;  2X6W A;  1IDJ A;  1QJV A;  2BM5 A;  2X3H A;  4NK8 A;  3BH6 B;  4OJP A;  1KCC A;  1O8L A;  3SYJ A;  2O0W A;  1PLU A;  2BM6 A;  4MXN A;  4XNF A;  1KTW A;  1LLW A;  1DBG A;  1JTA A;  4YCQ A;  3N6Z A;  2NTB A;  3GQ7 A;  3T9G A;  5JMC B;  2VFQ A;  1O8J A;  2VJI A;  2NSP A;  4XLE A;  1OFL A;  2BSP A;  2EWE A;  4YFO A;  4XLC A;  2J8I A;  1BN8 A;  1OGM X;  2PYG A;  2NTQ A;  1OOC A;  4V02 C;  3SY2 A;  1O8F A;  4OJO A;  4OPW A;  4XQF A;  1QA2 A;  1TYV A;  4YZA A;  4Z05 A;  4OZZ A;  1XG2 A;  2INU A;  4OJL A;  4XOR A;  2PEC A;  4OZY A;  1HG8 A;  1IDK A;  1K8F A;  2XTX A;  3TH0 A;  1WXR A;  4Z03 A;  3VSU A;  1OFM A;  1O8H A;  2V5I A;  3N90 A;  4YC5 A;  2VFM A;  3PSS A;  2YUH A;  3LJY A;  4U4B A;  4XMY A;  2ODL A;  2F3L A;  3P4G A;  1IB4 A;  1H80 A;  3B8Y A;  2QZA A;  4W8S A;  2NT9 A;  3GQ8 A;  4XON A;  4Z06 A;  2XC1 A;  2BX6 A;  4XLH A;  2NT6 A;  4XOT A;  4XOP A;  1KCD A;  5DNS A;  3RIQ A;  3LYC A;  1GQ8 A;  2VBK A;  3FY3 A;  2BM4 A;  4W8R A;  4XLA A;  2UVE A;  4KH3 A;  1CLW A;  2Z8G A;  4YZX A;  1X0C A;  1LM1 A;  2O1D A;  3KRG A;  2O17 A;  4W8Q A;  1EZG A;  2XTW A;  2PYH A;  1QQ1 A;  5JLV C;  1LLZ A;  4C2L A;  3VSV A;  1O8D A;  1NHC A;  3ZPP A;  4XKV A;  2VFP A;  2O04 A;  2VBM A;  4YZ0 A;  3PSZ A;  1QA3 A;  1DBO A;  2IOU G;  3B4N A;  1TYU A;  3ZSC A;  4NK6 A;  4XL9 A;  4HWV A;  1RU4 A;  4XM3 A;  1JRG A; 
#chains in the Genus database with same CATH homology
 4PMH A;  3JUR A;  1O8K A;  2QY1 A;  4I84 A;  1O88 A;  1CZF A;  3EQN A;  2NZM A;  2NST A;  4U49 A;  3UW0 A;  3LMW A;  2QX3 A;  3VMV A;  2X85 A;  4YZQ A;  1RWR A;  3GQA A;  1QCX A;  3SUC A;  2X6X A;  3VMW A;  4XN0 A;  4W8T A;  1BHE A;  1O8I A;  1AIR A;  2INV A;  2VJJ A;  4MR0 A;  4EW9 A;  4YEJ A;  4XN3 A;  4OJ5 A;  2QXZ A;  1EE6 A;  4OJ6 A;  4XLF A;  3VST A;  4YEL A;  4XKW A;  5C1E A;  2VBE A;  4AVZ A;  1IA5 A;  2O0V A;  4URR A;  4XR6 A;  1O8E A;  1WMR A;  5C1C A;  2NTP A;  1RMG A;  1O8M A;  2IQ7 A;  2X6Y A;  1PE9 A;  3B90 A;  1PXZ A;  3GRH A;  1OGO X;  5AMV A;  3WWG A;  1O8G A;  3GQ9 A;  1K5C A;  3EQO A;  1VBL A;  2X6W A;  1IDJ A;  1QJV A;  2X3H A;  4NK8 A;  4OJP A;  1KCC A;  1O8L A;  2O0W A;  1PLU A;  4MXN A;  4XNF A;  1KTW A;  1DBG A;  1JTA A;  2NTB A;  3GQ7 A;  3T9G A;  1O8J A;  1JRG A;  2VJI A;  2NSP A;  4XLE A;  1OFL A;  2BSP A;  2EWE A;  4XLC A;  1BN8 A;  1OGM X;  2PYG A;  2NTQ A;  1OOC A;  1O8F A;  4OJO A;  4XQF A;  4YZA A;  4Z05 A;  4OZZ A;  1XG2 A;  2INU A;  4OJL A;  4XOR A;  2PEC A;  4OZY A;  1HG8 A;  1IDK A;  4Z03 A;  3VSU A;  1OFM A;  1O8H A;  4U4B A;  4XMY A;  2ODL A;  1IB4 A;  1H80 A;  3B8Y A;  4W8S A;  2NT9 A;  3GQ8 A;  4XON A;  4Z06 A;  4XLH A;  4XOT A;  2NT6 A;  1KCD A;  4XOP A;  1GQ8 A;  2VBK A;  3FY3 A;  4W8R A;  4XLA A;  2UVE A;  2Z8G A;  4YZX A;  1X0C A;  3KRG A;  2O1D A;  2O17 A;  4W8Q A;  2PYH A;  4C2L A;  3VSV A;  1O8D A;  1NHC A;  3ZPP A;  4XKV A;  2O04 A;  2VBM A;  4YZ0 A;  1DBO A;  3B4N A;  3ZSC A;  4NK6 A;  4XL9 A;  4HWV A;  1RU4 A;  4XM3 A;  2UVF A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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