2O3AA

Crystal structure of a protein af_0751 from archaeoglobus fulgidus
Total Genus 46
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
46
Knots found
sequence length
167
structure length
161
Chain Sequence
LEVYVLRLGHRPDKRISTHVALTARAFGAKGIYFDTEDKSVFESVRDVVERWGGDFFIKAVSWKKLLREFDGLKVHLTMYGIPLPQKLEEIKRADKVLVVVGPPEVYELCDLNISIGTQPHSEVAALAVFLDRVLGKVFDISFDDAKIKVIPSERGKRVVS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords UPF0106 protein AF_0751
publication title Crystal structure of a protein AF_0751 from Archaeoglobus fulgidus
rcsb
source organism Archaeoglobus fulgidus
molecule tags Structural genomics, unknown function
total genus 46
structure length 161
sequence length 167
chains with identical sequence B
other databases KnotProt 2.0: K +31
ec nomenclature ec 2.1.1.206: tRNA (cytidine(56)-2'-O)-methyltransferase.
pdb deposition date 2006-12-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01994 Trm56 tRNA ribose 2'-O-methyltransferase, aTrm56
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1280.10 Alpha Beta 3-Layer(aba) Sandwich Alpha/beta knot Alpha/beta knot 2o3aA00
4YQNA 3GYQA 3DCMX 2HA8A 5GMCA 2CX8A 1VH0A 4YPYA 1J85A 2EGVA 1P9PA 4YQ7A 1UAMA 4IG6A 3ONPA 1VHKA 2I6DA 3N4JA 4YQGA 2QMMA 3IC6A 4MCBA 3E5YA 4YQ2A 4YQLA 3BBEA 4YQ0A 1TO0A 3OIJA 5D9FA 3KNUA 4YQTA 4JALA 3KW2A 4CNFA 4YQ5A 1X7OA 4YVIA 4YVKA 2YY8A 5GM8A 4YVGA 4L69A 3AIAA 1OY5A 4JAKA 1MXIA 1VHYA 4YQBA 4RG1A 4YQ6A 2QWVA 1K3RA 4YQ1A 4YQRA 4YQIA 4FAKA 3NK6A 3O7BA 3AI9X 2V3KA 2O3AA 4CNGA 1UAKA 4YQQA 1NXZA 4CNDA 4H3ZA 3BBHA 1O6DA 4YQKA 4YQ4A 4YQSA 5FAIA 4X3MA 4CNEA 4KDZA 4H3YA 2EGWA 2V3JA 4MCCA 4YQAA 4YPXA 5GMBA 4MCDA 1UAJA 1ZJRA 3KTYA 4YQOA 4YQCA 4YVJA 3L8UA 3NK7A 4YPWA 1IPAA 4YPZA 4YQJA 4YQ9A 3QUVA 4YQPA 4E8BA 4YQ3A 1Z85A 3BBDA 1V2XA 3OIIA 4KGNA 1V6ZA 4PZKA 5CO4A 3AXZA 4X3LA 1UALA 3KY7A 3N4KA 4XBOA 1GZ0A 4YVHA 4YQ8A 4YQDA 3IEFA 3OINA 2Z0YA 3ILKA 1X7PA 4J3CA 1NS5A
chains in the Genus database with same CATH superfamily
4YQNA 3GYQA 3DCMX 2HA8A 5GMCA 2CX8A 1VH0A 4YPYA 1J85A 2EGVA 1P9PA 4YQ7A 1UAMA 4IG6A 3ONPA 1VHKA 2I6DA 3N4JA 4YQGA 2QMMA 3IC6A 4MCBA 3E5YA 4YQ2A 4YQLA 3BBEA 4YQ0A 1TO0A 3OIJA 5D9FA 3KNUA 4YQTA 4JALA 3KW2A 4CNFA 4YQ5A 1X7OA 4YVIA 4YVKA 2YY8A 5GM8A 4YVGA 4L69A 3AIAA 1OY5A 4JAKA 1MXIA 1VHYA 4YQBA 4RG1A 4YQ6A 2QWVA 1K3RA 4YQ1A 4YQRA 4YQIA 4FAKA 3NK6A 3O7BA 3AI9X 2V3KA 2O3AA 4CNGA 1UAKA 4YQQA 1NXZA 4CNDA 4H3ZA 4JWJA 3BBHA 1O6DA 4YQKA 4YQ4A 4YQSA 5FAIA 4X3MA 4CNEA 4KDZA 4H3YA 2EGWA 4JWGA 2V3JA 4MCCA 4YQAA 4YPXA 5GMBA 4MCDA 1UAJA 1ZJRA 3KTYA 4YQOA 4YQCA 4YVJA 3L8UA 3NK7A 4FMWA 1IPAA 4YPWA 4YPZA 4YQJA 4YQ9A 3QUVA 4YQPA 4E8BA 4YQ3A 1Z85A 3BBDA 1V2XA 3OIIA 4KGNA 1V6ZA 4PZKA 5CO4A 3AXZA 4X3LA 1UALA 3KY7A 3N4KA 4XBOA 1GZ0A 4YVHA 4JWFA 4YQ8A 4YQDA 3IEFA 3OINA 2Z0YA 4JWHA 3ILKA 1X7PA 4J3CA 1NS5A
chains in the Genus database with same CATH topology
4YQNA 3GYQA 3DCMX 2HA8A 5GMCA 2CX8A 1VH0A 4YPYA 1J85A 2EGVA 1P9PA 4YQ7A 1UAMA 4IG6A 3ONPA 1VHKA 2I6DA 3N4JA 4YQGA 2QMMA 3IC6A 4MCBA 3E5YA 4YQ2A 4YQLA 3BBEA 4YQ0A 1TO0A 3OIJA 5D9FA 3KNUA 4YQTA 4JALA 3KW2A 4CNFA 4YQ5A 1X7OA 4YVIA 4YVKA 2YY8A 5GM8A 4YVGA 4L69A 3AIAA 1OY5A 4JAKA 1MXIA 1VHYA 4YQBA 4RG1A 4YQ6A 2QWVA 1K3RA 4YQ1A 4YQRA 4YQIA 4FAKA 3NK6A 3O7BA 3AI9X 2V3KA 2O3AA 4CNGA 1UAKA 4YQQA 1NXZA 4CNDA 4H3ZA 4JWJA 3BBHA 1O6DA 4YQKA 4YQ4A 4YQSA 5FAIA 4X3MA 4CNEA 4KDZA 4H3YA 2EGWA 4JWGA 2V3JA 4MCCA 4YQAA 4YPXA 5GMBA 4MCDA 1UAJA 1ZJRA 3KTYA 4YQOA 4YQCA 4YVJA 3L8UA 3NK7A 4FMWA 1IPAA 4YPWA 4YPZA 4YQJA 4YQ9A 3QUVA 4YQPA 4E8BA 4YQ3A 1Z85A 3BBDA 1V2XA 3OIIA 4KGNA 1V6ZA 4PZKA 5CO4A 3AXZA 4X3LA 1UALA 3KY7A 3N4KA 4XBOA 1GZ0A 4YVHA 4JWFA 4YQ8A 4YQDA 3IEFA 3OINA 2Z0YA 4JWHA 3ILKA 1X7PA 4J3CA 1NS5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4YQN A;  3GYQ A;  3DCM X;  2HA8 A;  5GMC A;  2CX8 A;  1VH0 A;  4YPY A;  1J85 A;  2EGV A;  1P9P A;  4YQ7 A;  1UAM A;  4IG6 A;  3ONP A;  1VHK A;  2I6D A;  3N4J A;  4YQG A;  2QMM A;  3IC6 A;  4MCB A;  3E5Y A;  4YQ2 A;  4YQL A;  3BBE A;  4YQ0 A;  1TO0 A;  3OIJ A;  5D9F A;  3KNU A;  4YQT A;  4JAL A;  3KW2 A;  4CNF A;  4YQ5 A;  1X7O A;  4YVI A;  4YVK A;  2YY8 A;  5GM8 A;  4YVG A;  4L69 A;  3AIA A;  1OY5 A;  4JAK A;  1MXI A;  1VHY A;  4YQB A;  4RG1 A;  4YQ6 A;  2QWV A;  1K3R A;  4YQ1 A;  4YQR A;  4YQI A;  4FAK A;  3NK6 A;  3O7B A;  3AI9 X;  2V3K A;  2O3A A;  4CNG A;  1UAK A;  4YQQ A;  1NXZ A;  4CND A;  4H3Z A;  3BBH A;  1O6D A;  4YQK A;  4YQ4 A;  4YQS A;  5FAI A;  4X3M A;  4CNE A;  4KDZ A;  4H3Y A;  2EGW A;  2V3J A;  4MCC A;  4YQA A;  4YPX A;  5GMB A;  4MCD A;  1UAJ A;  1ZJR A;  3KTY A;  4YQO A;  4YQC A;  4YVJ A;  3L8U A;  3NK7 A;  4YPW A;  1IPA A;  4YPZ A;  4YQJ A;  4YQ9 A;  3QUV A;  4YQP A;  4E8B A;  4YQ3 A;  1Z85 A;  3BBD A;  1V2X A;  3OII A;  4KGN A;  1V6Z A;  4PZK A;  5CO4 A;  3AXZ A;  4X3L A;  1UAL A;  3KY7 A;  3N4K A;  4XBO A;  1GZ0 A;  4YVH A;  4YQ8 A;  4YQD A;  3IEF A;  3OIN A;  2Z0Y A;  3ILK A;  1X7P A;  4J3C A;  1NS5 A; 
#chains in the Genus database with same CATH topology
 4YQN A;  3GYQ A;  3DCM X;  2HA8 A;  5GMC A;  2CX8 A;  1VH0 A;  4YPY A;  1J85 A;  2EGV A;  1P9P A;  4YQ7 A;  1UAM A;  4IG6 A;  3ONP A;  1VHK A;  2I6D A;  3N4J A;  4YQG A;  2QMM A;  3IC6 A;  4MCB A;  3E5Y A;  4YQ2 A;  4YQL A;  3BBE A;  4YQ0 A;  1TO0 A;  3OIJ A;  5D9F A;  3KNU A;  4YQT A;  4JAL A;  3KW2 A;  4CNF A;  4YQ5 A;  1X7O A;  4YVI A;  4YVK A;  2YY8 A;  5GM8 A;  4YVG A;  4L69 A;  3AIA A;  1OY5 A;  4JAK A;  1MXI A;  1VHY A;  4YQB A;  4RG1 A;  4YQ6 A;  2QWV A;  1K3R A;  4YQ1 A;  4YQR A;  4YQI A;  4FAK A;  3NK6 A;  3O7B A;  3AI9 X;  2V3K A;  2O3A A;  4CNG A;  1UAK A;  4YQQ A;  1NXZ A;  4CND A;  4H3Z A;  4JWJ A;  3BBH A;  1O6D A;  4YQK A;  4YQ4 A;  4YQS A;  5FAI A;  4X3M A;  4CNE A;  4KDZ A;  4H3Y A;  2EGW A;  4JWG A;  2V3J A;  4MCC A;  4YQA A;  4YPX A;  5GMB A;  4MCD A;  1UAJ A;  1ZJR A;  3KTY A;  4YQO A;  4YQC A;  4YVJ A;  3L8U A;  3NK7 A;  4FMW A;  1IPA A;  4YPW A;  4YPZ A;  4YQJ A;  4YQ9 A;  3QUV A;  4YQP A;  4E8B A;  4YQ3 A;  1Z85 A;  3BBD A;  1V2X A;  3OII A;  4KGN A;  1V6Z A;  4PZK A;  5CO4 A;  3AXZ A;  4X3L A;  1UAL A;  3KY7 A;  3N4K A;  4XBO A;  1GZ0 A;  4YVH A;  4JWF A;  4YQ8 A;  4YQD A;  3IEF A;  3OIN A;  2Z0Y A;  4JWH A;  3ILK A;  1X7P A;  4J3C A;  1NS5 A; 
#chains in the Genus database with same CATH homology
 4YQN A;  3GYQ A;  3DCM X;  2HA8 A;  5GMC A;  2CX8 A;  1VH0 A;  4YPY A;  1J85 A;  2EGV A;  1P9P A;  4YQ7 A;  1UAM A;  4IG6 A;  3ONP A;  1VHK A;  2I6D A;  3N4J A;  4YQG A;  2QMM A;  3IC6 A;  4MCB A;  3E5Y A;  4YQ2 A;  4YQL A;  3BBE A;  4YQ0 A;  1TO0 A;  3OIJ A;  5D9F A;  3KNU A;  4YQT A;  4JAL A;  3KW2 A;  4CNF A;  4YQ5 A;  1X7O A;  4YVI A;  4YVK A;  2YY8 A;  5GM8 A;  4YVG A;  4L69 A;  3AIA A;  1OY5 A;  4JAK A;  1MXI A;  1VHY A;  4YQB A;  4RG1 A;  4YQ6 A;  2QWV A;  1K3R A;  4YQ1 A;  4YQR A;  4YQI A;  4FAK A;  3NK6 A;  3O7B A;  3AI9 X;  2V3K A;  2O3A A;  4CNG A;  1UAK A;  4YQQ A;  1NXZ A;  4CND A;  4H3Z A;  4JWJ A;  3BBH A;  1O6D A;  4YQK A;  4YQ4 A;  4YQS A;  5FAI A;  4X3M A;  4CNE A;  4KDZ A;  4H3Y A;  2EGW A;  4JWG A;  2V3J A;  4MCC A;  4YQA A;  4YPX A;  5GMB A;  4MCD A;  1UAJ A;  1ZJR A;  3KTY A;  4YQO A;  4YQC A;  4YVJ A;  3L8U A;  3NK7 A;  4FMW A;  1IPA A;  4YPW A;  4YPZ A;  4YQJ A;  4YQ9 A;  3QUV A;  4YQP A;  4E8B A;  4YQ3 A;  1Z85 A;  3BBD A;  1V2X A;  3OII A;  4KGN A;  1V6Z A;  4PZK A;  5CO4 A;  3AXZ A;  4X3L A;  1UAL A;  3KY7 A;  3N4K A;  4XBO A;  1GZ0 A;  4YVH A;  4JWF A;  4YQ8 A;  4YQD A;  3IEF A;  3OIN A;  2Z0Y A;  4JWH A;  3ILK A;  1X7P A;  4J3C A;  1NS5 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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