2O3AA

Crystal structure of a protein af_0751 from archaeoglobus fulgidus
Total Genus 46
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
46
Knots found
sequence length
167
structure length
161
Chain Sequence
b'LEVYVLRLGHRPDKRISTHVALTARAFGAKGIYFDTEDKSVFESVRDVVERWGGDFFIKAVSWKKLLREFDGLKVHLTMYGIPLPQKLEEIKRADKVLVVVGPPEVYELCDLNISIGTQPHSEVAALAVFLDRVLGKVFDISFDDAKIKVIPSERGKRVVS'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords UPF0106 protein AF_0751
publication title Crystal structure of a protein AF_0751 from Archaeoglobus fulgidus
rcsb
source organism Archaeoglobus fulgidus
molecule tags Structural genomics, unknown function
total genus 46
structure length 161
sequence length 167
chains with identical sequence B
other databases KnotProt 2.0: K +31
ec nomenclature ec 2.1.1.206: tRNA (cytidine(56)-2'-O)-methyltransferase.
pdb deposition date 2006-12-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01994 Trm56 tRNA ribose 2'-O-methyltransferase, aTrm56
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1280.10 Alpha Beta 3-Layer(aba) Sandwich Alpha/beta knot Alpha/beta knot 2o3aA00
1Z85A 4YQNA 2I6DA 1GZ0A 4IG6A 4YPZA 2EGVA 5FAIA 4YQ3A 4FAKA 5GMBA 3ONPA 4CNFA 4YQJA 1V2XA 4YVGA 3BBDA 3KNUA 4YQKA 4YQOA 4YQQA 4YQLA 4X3LA 3KY7A 3DCMX 3GYQA 1UALA 4YPYA 3KW2A 2QMMA 3OIJA 3OIIA 4YQPA 4YQCA 4YPWA 1X7PA 1J85A 3ILKA 4KGNA 2QWVA 3N4JA 1K3RA 4MCCA 2O3AA 4KDZA 4YQ7A 4CNDA 4YVJA 1P9PA 4X3MA 5CO4A 1VH0A 1IPAA 3QUVA 2EGWA 4RG1A 1NXZA 2HA8A 2V3JA 2YY8A 1NS5A 4JALA 4YQRA 4JAKA 4YVHA 3NK7A 4PZKA 3O7BA 4YQAA 4CNEA 3AIAA 2Z0YA 3N4KA 4YQIA 3KTYA 3E5YA 4YQ4A 4MCDA 1UAJA 1OY5A 4H3YA 4YQDA 1V6ZA 2CX8A 1O6DA 2V3KA 4YPXA 4E8BA 1VHKA 3BBHA 4YQ2A 4YQGA 4CNGA 4YVKA 1ZJRA 4H3ZA 3AXZA 4YQ6A 4YQ5A 1UAMA 4YQSA 4L69A 3IC6A 3BBEA 4YQBA 3IEFA 3L8UA 5D9FA 4YQTA 3NK6A 4YQ9A 4XBOA 4YQ1A 1MXIA 4J3CA 1X7OA 4YVIA 5GMCA 4YQ0A 3AI9X 1TO0A 1UAKA 4YQ8A 1VHYA 5GM8A 3OINA 4MCBA
chains in the Genus database with same CATH superfamily
1Z85A 4YQNA 2I6DA 1GZ0A 4IG6A 4YPZA 2EGVA 5FAIA 4YQ3A 4FAKA 5GMBA 3ONPA 4CNFA 4YQJA 1V2XA 4YVGA 3BBDA 3KNUA 4YQKA 4YQOA 4YQQA 4YQLA 4X3LA 3KY7A 3DCMX 3GYQA 1UALA 4YPYA 3KW2A 2QMMA 3OIJA 3OIIA 4YQPA 4YQCA 4YPWA 1X7PA 1J85A 3ILKA 4KGNA 2QWVA 3N4JA 1K3RA 4MCCA 2O3AA 4KDZA 4YQ7A 4CNDA 4YVJA 1P9PA 4X3MA 5CO4A 1VH0A 1IPAA 3QUVA 2EGWA 4RG1A 1NXZA 2HA8A 2V3JA 2YY8A 1NS5A 4JALA 4YQRA 4JAKA 4YVHA 4JWJA 3NK7A 4PZKA 3O7BA 4YQAA 4CNEA 3AIAA 2Z0YA 3N4KA 4YQIA 3KTYA 3E5YA 4YQ4A 4MCDA 4JWGA 1UAJA 1OY5A 4H3YA 4YQDA 1V6ZA 2CX8A 1O6DA 2V3KA 4YPXA 4JWFA 4E8BA 1VHKA 3BBHA 4YQ2A 4YQGA 4CNGA 4YVKA 1ZJRA 4H3ZA 3AXZA 4YQ6A 4YQ5A 1UAMA 4YQSA 4L69A 3IC6A 3BBEA 4YQBA 3IEFA 3L8UA 5D9FA 4YQTA 3NK6A 4FMWA 4YQ9A 4XBOA 4YQ1A 1MXIA 4JWHA 4J3CA 1X7OA 4YVIA 5GMCA 4YQ0A 3AI9X 1TO0A 1UAKA 4YQ8A 1VHYA 5GM8A 3OINA 4MCBA
chains in the Genus database with same CATH topology
1Z85A 4YQNA 2I6DA 1GZ0A 4IG6A 4YPZA 2EGVA 5FAIA 4YQ3A 4FAKA 5GMBA 3ONPA 4CNFA 4YQJA 1V2XA 4YVGA 3BBDA 3KNUA 4YQKA 4YQOA 4YQQA 4YQLA 4X3LA 3KY7A 3DCMX 3GYQA 1UALA 4YPYA 3KW2A 2QMMA 3OIJA 3OIIA 4YQPA 4YQCA 4YPWA 1X7PA 1J85A 3ILKA 4KGNA 2QWVA 3N4JA 1K3RA 4MCCA 2O3AA 4KDZA 4YQ7A 4CNDA 4YVJA 1P9PA 4X3MA 5CO4A 1VH0A 1IPAA 3QUVA 2EGWA 4RG1A 1NXZA 2HA8A 2V3JA 2YY8A 1NS5A 4JALA 4YQRA 4JAKA 4YVHA 4JWJA 3NK7A 4PZKA 3O7BA 4YQAA 4CNEA 3AIAA 2Z0YA 3N4KA 4YQIA 3KTYA 3E5YA 4YQ4A 4MCDA 4JWGA 1UAJA 1OY5A 4H3YA 4YQDA 1V6ZA 2CX8A 1O6DA 2V3KA 4YPXA 4JWFA 4E8BA 1VHKA 3BBHA 4YQ2A 4YQGA 4CNGA 4YVKA 1ZJRA 4H3ZA 3AXZA 4YQ6A 4YQ5A 1UAMA 4YQSA 4L69A 3IC6A 3BBEA 4YQBA 3IEFA 3L8UA 5D9FA 4YQTA 3NK6A 4FMWA 4YQ9A 4XBOA 4YQ1A 1MXIA 4JWHA 4J3CA 1X7OA 4YVIA 5GMCA 4YQ0A 3AI9X 1TO0A 1UAKA 4YQ8A 1VHYA 5GM8A 3OINA 4MCBA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1Z85 A;  4YQN A;  2I6D A;  1GZ0 A;  4IG6 A;  4YPZ A;  2EGV A;  5FAI A;  4YQ3 A;  4FAK A;  5GMB A;  3ONP A;  4CNF A;  4YQJ A;  1V2X A;  4YVG A;  3BBD A;  3KNU A;  4YQK A;  4YQO A;  4YQQ A;  4YQL A;  4X3L A;  3KY7 A;  3DCM X;  3GYQ A;  1UAL A;  4YPY A;  3KW2 A;  2QMM A;  3OIJ A;  3OII A;  4YQP A;  4YQC A;  4YPW A;  1X7P A;  1J85 A;  3ILK A;  4KGN A;  2QWV A;  3N4J A;  1K3R A;  4MCC A;  2O3A A;  4KDZ A;  4YQ7 A;  4CND A;  4YVJ A;  1P9P A;  4X3M A;  5CO4 A;  1VH0 A;  1IPA A;  3QUV A;  2EGW A;  4RG1 A;  1NXZ A;  2HA8 A;  2V3J A;  2YY8 A;  1NS5 A;  4JAL A;  4YQR A;  4JAK A;  4YVH A;  3NK7 A;  4PZK A;  3O7B A;  4YQA A;  4CNE A;  3AIA A;  2Z0Y A;  3N4K A;  4YQI A;  3KTY A;  3E5Y A;  4YQ4 A;  4MCD A;  1UAJ A;  1OY5 A;  4H3Y A;  4YQD A;  1V6Z A;  2CX8 A;  1O6D A;  2V3K A;  4YPX A;  4E8B A;  1VHK A;  3BBH A;  4YQ2 A;  4YQG A;  4CNG A;  4YVK A;  1ZJR A;  4H3Z A;  3AXZ A;  4YQ6 A;  4YQ5 A;  1UAM A;  4YQS A;  4L69 A;  3IC6 A;  3BBE A;  4YQB A;  3IEF A;  3L8U A;  5D9F A;  4YQT A;  3NK6 A;  4YQ9 A;  4XBO A;  4YQ1 A;  1MXI A;  4J3C A;  1X7O A;  4YVI A;  5GMC A;  4YQ0 A;  3AI9 X;  1TO0 A;  1UAK A;  4YQ8 A;  1VHY A;  5GM8 A;  3OIN A;  4MCB A; 
#chains in the Genus database with same CATH topology
 1Z85 A;  4YQN A;  2I6D A;  1GZ0 A;  4IG6 A;  4YPZ A;  2EGV A;  5FAI A;  4YQ3 A;  4FAK A;  5GMB A;  3ONP A;  4CNF A;  4YQJ A;  1V2X A;  4YVG A;  3BBD A;  3KNU A;  4YQK A;  4YQO A;  4YQQ A;  4YQL A;  4X3L A;  3KY7 A;  3DCM X;  3GYQ A;  1UAL A;  4YPY A;  3KW2 A;  2QMM A;  3OIJ A;  3OII A;  4YQP A;  4YQC A;  4YPW A;  1X7P A;  1J85 A;  3ILK A;  4KGN A;  2QWV A;  3N4J A;  1K3R A;  4MCC A;  2O3A A;  4KDZ A;  4YQ7 A;  4CND A;  4YVJ A;  1P9P A;  4X3M A;  5CO4 A;  1VH0 A;  1IPA A;  3QUV A;  2EGW A;  4RG1 A;  1NXZ A;  2HA8 A;  2V3J A;  2YY8 A;  1NS5 A;  4JAL A;  4YQR A;  4JAK A;  4YVH A;  4JWJ A;  3NK7 A;  4PZK A;  3O7B A;  4YQA A;  4CNE A;  3AIA A;  2Z0Y A;  3N4K A;  4YQI A;  3KTY A;  3E5Y A;  4YQ4 A;  4MCD A;  4JWG A;  1UAJ A;  1OY5 A;  4H3Y A;  4YQD A;  1V6Z A;  2CX8 A;  1O6D A;  2V3K A;  4YPX A;  4JWF A;  4E8B A;  1VHK A;  3BBH A;  4YQ2 A;  4YQG A;  4CNG A;  4YVK A;  1ZJR A;  4H3Z A;  3AXZ A;  4YQ6 A;  4YQ5 A;  1UAM A;  4YQS A;  4L69 A;  3IC6 A;  3BBE A;  4YQB A;  3IEF A;  3L8U A;  5D9F A;  4YQT A;  3NK6 A;  4FMW A;  4YQ9 A;  4XBO A;  4YQ1 A;  1MXI A;  4JWH A;  4J3C A;  1X7O A;  4YVI A;  5GMC A;  4YQ0 A;  3AI9 X;  1TO0 A;  1UAK A;  4YQ8 A;  1VHY A;  5GM8 A;  3OIN A;  4MCB A; 
#chains in the Genus database with same CATH homology
 1Z85 A;  4YQN A;  2I6D A;  1GZ0 A;  4IG6 A;  4YPZ A;  2EGV A;  5FAI A;  4YQ3 A;  4FAK A;  5GMB A;  3ONP A;  4CNF A;  4YQJ A;  1V2X A;  4YVG A;  3BBD A;  3KNU A;  4YQK A;  4YQO A;  4YQQ A;  4YQL A;  4X3L A;  3KY7 A;  3DCM X;  3GYQ A;  1UAL A;  4YPY A;  3KW2 A;  2QMM A;  3OIJ A;  3OII A;  4YQP A;  4YQC A;  4YPW A;  1X7P A;  1J85 A;  3ILK A;  4KGN A;  2QWV A;  3N4J A;  1K3R A;  4MCC A;  2O3A A;  4KDZ A;  4YQ7 A;  4CND A;  4YVJ A;  1P9P A;  4X3M A;  5CO4 A;  1VH0 A;  1IPA A;  3QUV A;  2EGW A;  4RG1 A;  1NXZ A;  2HA8 A;  2V3J A;  2YY8 A;  1NS5 A;  4JAL A;  4YQR A;  4JAK A;  4YVH A;  4JWJ A;  3NK7 A;  4PZK A;  3O7B A;  4YQA A;  4CNE A;  3AIA A;  2Z0Y A;  3N4K A;  4YQI A;  3KTY A;  3E5Y A;  4YQ4 A;  4MCD A;  4JWG A;  1UAJ A;  1OY5 A;  4H3Y A;  4YQD A;  1V6Z A;  2CX8 A;  1O6D A;  2V3K A;  4YPX A;  4JWF A;  4E8B A;  1VHK A;  3BBH A;  4YQ2 A;  4YQG A;  4CNG A;  4YVK A;  1ZJR A;  4H3Z A;  3AXZ A;  4YQ6 A;  4YQ5 A;  1UAM A;  4YQS A;  4L69 A;  3IC6 A;  3BBE A;  4YQB A;  3IEF A;  3L8U A;  5D9F A;  4YQT A;  3NK6 A;  4FMW A;  4YQ9 A;  4XBO A;  4YQ1 A;  1MXI A;  4JWH A;  4J3C A;  1X7O A;  4YVI A;  5GMC A;  4YQ0 A;  3AI9 X;  1TO0 A;  1UAK A;  4YQ8 A;  1VHY A;  5GM8 A;  3OIN A;  4MCB A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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