2O3AA

Crystal structure of a protein af_0751 from archaeoglobus fulgidus
Total Genus 46
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
46
Knots found
sequence length
167
structure length
161
Chain Sequence
LEVYVLRLGHRPDKRISTHVALTARAFGAKGIYFDTEDKSVFESVRDVVERWGGDFFIKAVSWKKLLREFDGLKVHLTMYGIPLPQKLEEIKRADKVLVVVGPPEVYELCDLNISIGTQPHSEVAALAVFLDRVLGKVFDISFDDAKIKVIPSERGKRVVS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of a protein AF_0751 from Archaeoglobus fulgidus
rcsb
molecule keywords UPF0106 protein AF_0751
source organism Archaeoglobus fulgidus
molecule tags Structural genomics, unknown function
total genus 46
structure length 161
sequence length 167
chains with identical sequence B
other databases KnotProt 2.0: K +31
ec nomenclature ec 2.1.1.206: tRNA (cytidine(56)-2'-O)-methyltransferase.
pdb deposition date 2006-12-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01994 Trm56 tRNA ribose 2'-O-methyltransferase, aTrm56
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1280.10 Alpha Beta 3-Layer(aba) Sandwich Alpha/beta knot Alpha/beta knot 2o3aA00
4KDZA 4YQNA 4IG6A 1UAJA 1O6DA 4CNEA 3DCMX 1MXIA 4YQ0A 1X7PA 5GMCA 1ZJRA 4YQTA 4E8BA 3BBEA 2O3AA 1OY5A 4MCDA 4YQ9A 1IPAA 3BBHA 4JAKA 4YQ5A 3ONPA 4YQ3A 1K3RA 4YQ4A 4YQJA 4YPWA 3IC6A 3N4JA 2EGVA 4CNGA 4X3MA 4YVIA 5GMBA 3AIAA 3KTYA 4XBOA 4YQRA 1V6ZA 1UALA 3NK7A 3L8UA 4MCCA 4YQCA 2YY8A 4YQKA 4FAKA 1GZ0A 1UAKA 5CO4A 4H3YA 4YQSA 4YPXA 4PZKA 4YQ8A 4YQLA 1TO0A 2QMMA 4RG1A 1VHYA 4YQBA 2HA8A 3AXZA 4CNDA 5FAIA 1VHKA 2Z0YA 1UAMA 3OIJA 4YQDA 4YPYA 2EGWA 4YVKA 1X7OA 2I6DA 2V3KA 5GM8A 4JALA 4KGNA 4YQQA 2V3JA 4YQAA 2QWVA 3N4KA 1VH0A 3E5YA 5D9FA 1NS5A 4H3ZA 4YVHA 3OINA 4YQ6A 4YVGA 4MCBA 1V2XA 4YVJA 1J85A 3OIIA 3KNUA 3BBDA 3GYQA 4YQ1A 4CNFA 4YQOA 4YQIA 3KW2A 4YPZA 4YQ7A 4L69A 3ILKA 3AI9X 1NXZA 4YQ2A 2CX8A 4X3LA 3NK6A 3KY7A 1P9PA 4YQPA 4J3CA 4YQGA 1Z85A 3QUVA 3IEFA 3O7BA
chains in the Genus database with same CATH superfamily
4KDZA 4YQNA 4IG6A 1UAJA 1O6DA 4CNEA 3DCMX 1MXIA 4YQ0A 1X7PA 5GMCA 1ZJRA 4YQTA 4E8BA 3BBEA 2O3AA 1OY5A 4MCDA 4YQ9A 1IPAA 3BBHA 4JAKA 4YQ5A 3ONPA 4YQ3A 1K3RA 4YQ4A 4YQJA 4YPWA 3IC6A 4FMWA 3N4JA 2EGVA 4JWGA 4CNGA 4X3MA 4YVIA 5GMBA 3AIAA 3KTYA 4XBOA 4YQRA 1V6ZA 4JWFA 1UALA 3NK7A 3L8UA 4MCCA 4YQCA 4JWHA 2YY8A 4YQKA 4FAKA 1GZ0A 1UAKA 5CO4A 4H3YA 4YQSA 4YPXA 4PZKA 4YQ8A 4YQLA 1TO0A 2QMMA 4RG1A 1VHYA 4YQBA 2HA8A 3AXZA 4CNDA 5FAIA 1VHKA 2Z0YA 1UAMA 3OIJA 4YQDA 4YPYA 2EGWA 4YVKA 1X7OA 2I6DA 2V3KA 5GM8A 4JALA 4KGNA 4YQQA 2V3JA 4YQAA 2QWVA 3N4KA 1VH0A 3E5YA 5D9FA 1NS5A 4H3ZA 4YVHA 3OINA 4YQ6A 4YVGA 4MCBA 1V2XA 4YVJA 1J85A 3OIIA 3KNUA 3BBDA 3GYQA 4YQ1A 4CNFA 4YQOA 4YQIA 3KW2A 4YPZA 4YQ7A 4L69A 3ILKA 3AI9X 1NXZA 4YQ2A 2CX8A 4X3LA 3NK6A 3KY7A 1P9PA 4YQPA 4J3CA 4YQGA 1Z85A 4JWJA 3QUVA 3IEFA 3O7BA
chains in the Genus database with same CATH topology
4KDZA 4YQNA 4IG6A 1UAJA 1O6DA 4CNEA 3DCMX 1MXIA 4YQ0A 1X7PA 5GMCA 1ZJRA 4YQTA 4E8BA 3BBEA 2O3AA 1OY5A 4MCDA 4YQ9A 1IPAA 3BBHA 4JAKA 4YQ5A 3ONPA 4YQ3A 1K3RA 4YQ4A 4YQJA 4YPWA 3IC6A 4FMWA 3N4JA 2EGVA 4JWGA 4CNGA 4X3MA 4YVIA 5GMBA 3AIAA 3KTYA 4XBOA 4YQRA 1V6ZA 4JWFA 1UALA 3NK7A 3L8UA 4MCCA 4YQCA 4JWHA 2YY8A 4YQKA 4FAKA 1GZ0A 1UAKA 5CO4A 4H3YA 4YQSA 4YPXA 4PZKA 4YQ8A 4YQLA 1TO0A 2QMMA 4RG1A 1VHYA 4YQBA 2HA8A 3AXZA 4CNDA 5FAIA 1VHKA 2Z0YA 1UAMA 3OIJA 4YQDA 4YPYA 2EGWA 4YVKA 1X7OA 2I6DA 2V3KA 5GM8A 4JALA 4KGNA 4YQQA 2V3JA 4YQAA 2QWVA 3N4KA 1VH0A 3E5YA 5D9FA 1NS5A 4H3ZA 4YVHA 3OINA 4YQ6A 4YVGA 4MCBA 1V2XA 4YVJA 1J85A 3OIIA 3KNUA 3BBDA 3GYQA 4YQ1A 4CNFA 4YQOA 4YQIA 3KW2A 4YPZA 4YQ7A 4L69A 3ILKA 3AI9X 1NXZA 4YQ2A 2CX8A 4X3LA 3NK6A 3KY7A 1P9PA 4YQPA 4J3CA 4YQGA 1Z85A 4JWJA 3QUVA 3IEFA 3O7BA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4KDZ A;  4YQN A;  4IG6 A;  1UAJ A;  1O6D A;  4CNE A;  3DCM X;  1MXI A;  4YQ0 A;  1X7P A;  5GMC A;  1ZJR A;  4YQT A;  4E8B A;  3BBE A;  2O3A A;  1OY5 A;  4MCD A;  4YQ9 A;  1IPA A;  3BBH A;  4JAK A;  4YQ5 A;  3ONP A;  4YQ3 A;  1K3R A;  4YQ4 A;  4YQJ A;  4YPW A;  3IC6 A;  3N4J A;  2EGV A;  4CNG A;  4X3M A;  4YVI A;  5GMB A;  3AIA A;  3KTY A;  4XBO A;  4YQR A;  1V6Z A;  1UAL A;  3NK7 A;  3L8U A;  4MCC A;  4YQC A;  2YY8 A;  4YQK A;  4FAK A;  1GZ0 A;  1UAK A;  5CO4 A;  4H3Y A;  4YQS A;  4YPX A;  4PZK A;  4YQ8 A;  4YQL A;  1TO0 A;  2QMM A;  4RG1 A;  1VHY A;  4YQB A;  2HA8 A;  3AXZ A;  4CND A;  5FAI A;  1VHK A;  2Z0Y A;  1UAM A;  3OIJ A;  4YQD A;  4YPY A;  2EGW A;  4YVK A;  1X7O A;  2I6D A;  2V3K A;  5GM8 A;  4JAL A;  4KGN A;  4YQQ A;  2V3J A;  4YQA A;  2QWV A;  3N4K A;  1VH0 A;  3E5Y A;  5D9F A;  1NS5 A;  4H3Z A;  4YVH A;  3OIN A;  4YQ6 A;  4YVG A;  4MCB A;  1V2X A;  4YVJ A;  1J85 A;  3OII A;  3KNU A;  3BBD A;  3GYQ A;  4YQ1 A;  4CNF A;  4YQO A;  4YQI A;  3KW2 A;  4YPZ A;  4YQ7 A;  4L69 A;  3ILK A;  3AI9 X;  1NXZ A;  4YQ2 A;  2CX8 A;  4X3L A;  3NK6 A;  3KY7 A;  1P9P A;  4YQP A;  4J3C A;  4YQG A;  1Z85 A;  3QUV A;  3IEF A;  3O7B A; 
#chains in the Genus database with same CATH topology
 4KDZ A;  4YQN A;  4IG6 A;  1UAJ A;  1O6D A;  4CNE A;  3DCM X;  1MXI A;  4YQ0 A;  1X7P A;  5GMC A;  1ZJR A;  4YQT A;  4E8B A;  3BBE A;  2O3A A;  1OY5 A;  4MCD A;  4YQ9 A;  1IPA A;  3BBH A;  4JAK A;  4YQ5 A;  3ONP A;  4YQ3 A;  1K3R A;  4YQ4 A;  4YQJ A;  4YPW A;  3IC6 A;  4FMW A;  3N4J A;  2EGV A;  4JWG A;  4CNG A;  4X3M A;  4YVI A;  5GMB A;  3AIA A;  3KTY A;  4XBO A;  4YQR A;  1V6Z A;  4JWF A;  1UAL A;  3NK7 A;  3L8U A;  4MCC A;  4YQC A;  4JWH A;  2YY8 A;  4YQK A;  4FAK A;  1GZ0 A;  1UAK A;  5CO4 A;  4H3Y A;  4YQS A;  4YPX A;  4PZK A;  4YQ8 A;  4YQL A;  1TO0 A;  2QMM A;  4RG1 A;  1VHY A;  4YQB A;  2HA8 A;  3AXZ A;  4CND A;  5FAI A;  1VHK A;  2Z0Y A;  1UAM A;  3OIJ A;  4YQD A;  4YPY A;  2EGW A;  4YVK A;  1X7O A;  2I6D A;  2V3K A;  5GM8 A;  4JAL A;  4KGN A;  4YQQ A;  2V3J A;  4YQA A;  2QWV A;  3N4K A;  1VH0 A;  3E5Y A;  5D9F A;  1NS5 A;  4H3Z A;  4YVH A;  3OIN A;  4YQ6 A;  4YVG A;  4MCB A;  1V2X A;  4YVJ A;  1J85 A;  3OII A;  3KNU A;  3BBD A;  3GYQ A;  4YQ1 A;  4CNF A;  4YQO A;  4YQI A;  3KW2 A;  4YPZ A;  4YQ7 A;  4L69 A;  3ILK A;  3AI9 X;  1NXZ A;  4YQ2 A;  2CX8 A;  4X3L A;  3NK6 A;  3KY7 A;  1P9P A;  4YQP A;  4J3C A;  4YQG A;  1Z85 A;  4JWJ A;  3QUV A;  3IEF A;  3O7B A; 
#chains in the Genus database with same CATH homology
 4KDZ A;  4YQN A;  4IG6 A;  1UAJ A;  1O6D A;  4CNE A;  3DCM X;  1MXI A;  4YQ0 A;  1X7P A;  5GMC A;  1ZJR A;  4YQT A;  4E8B A;  3BBE A;  2O3A A;  1OY5 A;  4MCD A;  4YQ9 A;  1IPA A;  3BBH A;  4JAK A;  4YQ5 A;  3ONP A;  4YQ3 A;  1K3R A;  4YQ4 A;  4YQJ A;  4YPW A;  3IC6 A;  4FMW A;  3N4J A;  2EGV A;  4JWG A;  4CNG A;  4X3M A;  4YVI A;  5GMB A;  3AIA A;  3KTY A;  4XBO A;  4YQR A;  1V6Z A;  4JWF A;  1UAL A;  3NK7 A;  3L8U A;  4MCC A;  4YQC A;  4JWH A;  2YY8 A;  4YQK A;  4FAK A;  1GZ0 A;  1UAK A;  5CO4 A;  4H3Y A;  4YQS A;  4YPX A;  4PZK A;  4YQ8 A;  4YQL A;  1TO0 A;  2QMM A;  4RG1 A;  1VHY A;  4YQB A;  2HA8 A;  3AXZ A;  4CND A;  5FAI A;  1VHK A;  2Z0Y A;  1UAM A;  3OIJ A;  4YQD A;  4YPY A;  2EGW A;  4YVK A;  1X7O A;  2I6D A;  2V3K A;  5GM8 A;  4JAL A;  4KGN A;  4YQQ A;  2V3J A;  4YQA A;  2QWV A;  3N4K A;  1VH0 A;  3E5Y A;  5D9F A;  1NS5 A;  4H3Z A;  4YVH A;  3OIN A;  4YQ6 A;  4YVG A;  4MCB A;  1V2X A;  4YVJ A;  1J85 A;  3OII A;  3KNU A;  3BBD A;  3GYQ A;  4YQ1 A;  4CNF A;  4YQO A;  4YQI A;  3KW2 A;  4YPZ A;  4YQ7 A;  4L69 A;  3ILK A;  3AI9 X;  1NXZ A;  4YQ2 A;  2CX8 A;  4X3L A;  3NK6 A;  3KY7 A;  1P9P A;  4YQP A;  4J3C A;  4YQG A;  1Z85 A;  4JWJ A;  3QUV A;  3IEF A;  3O7B A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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