2O3AA

Crystal structure of a protein af_0751 from archaeoglobus fulgidus
Total Genus 46
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
46
Knots found
sequence length
167
structure length
161
Chain Sequence
LEVYVLRLGHRPDKRISTHVALTARAFGAKGIYFDTEDKSVFESVRDVVERWGGDFFIKAVSWKKLLREFDGLKVHLTMYGIPLPQKLEEIKRADKVLVVVGPPEVYELCDLNISIGTQPHSEVAALAVFLDRVLGKVFDISFDDAKIKVIPSERGKRVVS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural genomics, unknown function
source organism Archaeoglobus fulgidus
publication title Crystal structure of a protein AF_0751 from Archaeoglobus fulgidus
rcsb
molecule keywords UPF0106 protein AF_0751
total genus 46
structure length 161
sequence length 167
chains with identical sequence B
other databases KnotProt 2.0: K +31
ec nomenclature ec 2.1.1.206: tRNA (cytidine(56)-2'-O)-methyltransferase.
pdb deposition date 2006-12-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01994 Trm56 tRNA ribose 2'-O-methyltransferase, aTrm56
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1280.10 Alpha Beta 3-Layer(aba) Sandwich Alpha/beta knot Alpha/beta knot 2o3aA00
2EGVA 3AXZA 2I6DA 4YVJA 4YQTA 2V3JA 4PZKA 2HA8A 3ONPA 1P9PA 5GMCA 4YQNA 5GMBA 1K3RA 4CNEA 4YQ9A 2YY8A 4CNDA 4YQDA 5CO4A 4KDZA 2CX8A 3NK6A 5GM8A 3IEFA 4X3MA 1X7PA 4X3LA 3QUVA 4MCDA 4YQCA 3BBHA 2V3KA 4YVHA 4L69A 4XBOA 1J85A 4YQ3A 1Z85A 4YVIA 4YQSA 4YPWA 3L8UA 4CNFA 1V6ZA 4YPYA 3E5YA 4YQOA 4YQAA 1VH0A 1TO0A 4MCCA 2Z0YA 3DCMX 4YQJA 4YPZA 3OIJA 3GYQA 4YQKA 4YQ8A 4YQRA 1IPAA 1V2XA 3OIIA 2EGWA 1VHKA 4JALA 2QWVA 4MCBA 1UAKA 4YQ0A 3ILKA 1ZJRA 3KNUA 4YQLA 4YQ2A 4YQ6A 1NXZA 3AIAA 4YQPA 3AI9X 4YQBA 3O7BA 2O3AA 3N4JA 1O6DA 1X7OA 2QMMA 4H3YA 3KTYA 4J3CA 4YQ5A 4RG1A 1VHYA 4YVGA 4YPXA 4YQGA 3N4KA 3KW2A 5D9FA 4YQIA 4CNGA 4YQQA 1UALA 4KGNA 3BBDA 4YQ7A 4H3ZA 5FAIA 4IG6A 1UAJA 1NS5A 1UAMA 3BBEA 1GZ0A 3IC6A 4E8BA 1MXIA 4JAKA 3KY7A 3OINA 4YVKA 3NK7A 4YQ4A 4YQ1A 4FAKA 1OY5A
chains in the Genus database with same CATH superfamily
2EGVA 3AXZA 2I6DA 4YVJA 4YQTA 2V3JA 4PZKA 2HA8A 3ONPA 1P9PA 5GMCA 4YQNA 5GMBA 1K3RA 4CNEA 4YQ9A 2YY8A 4CNDA 4YQDA 5CO4A 4KDZA 2CX8A 3NK6A 5GM8A 3IEFA 4X3MA 1X7PA 4X3LA 3QUVA 4MCDA 4YQCA 3BBHA 2V3KA 4YVHA 4L69A 4XBOA 1J85A 4YQ3A 1Z85A 4YVIA 4YQSA 4YPWA 3L8UA 4CNFA 1V6ZA 4YPYA 3E5YA 4JWFA 4YQOA 4YQAA 1VH0A 1TO0A 4MCCA 2Z0YA 3DCMX 4YQJA 4YPZA 3OIJA 3GYQA 4YQKA 4YQ8A 4YQRA 1IPAA 1V2XA 3OIIA 2EGWA 1VHKA 4JALA 2QWVA 4MCBA 1UAKA 4JWJA 4JWHA 4YQ0A 3ILKA 1ZJRA 3KNUA 4YQLA 4YQ2A 4YQ6A 1NXZA 3AIAA 4YQPA 3AI9X 4YQBA 3O7BA 4JWGA 2O3AA 3N4JA 1O6DA 1X7OA 4FMWA 2QMMA 4H3YA 3KTYA 4J3CA 4YQ5A 4RG1A 1VHYA 4YVGA 4YPXA 4YQGA 3N4KA 3KW2A 5D9FA 4YQIA 4CNGA 4YQQA 1UALA 4KGNA 3BBDA 4YQ7A 4H3ZA 5FAIA 4IG6A 1UAJA 1NS5A 1UAMA 3BBEA 1GZ0A 3IC6A 4E8BA 1MXIA 4JAKA 3KY7A 3OINA 4YVKA 3NK7A 4YQ4A 4YQ1A 4FAKA 1OY5A
chains in the Genus database with same CATH topology
2EGVA 3AXZA 2I6DA 4YVJA 4YQTA 2V3JA 4PZKA 2HA8A 3ONPA 1P9PA 5GMCA 4YQNA 5GMBA 1K3RA 4CNEA 4YQ9A 2YY8A 4CNDA 4YQDA 5CO4A 4KDZA 2CX8A 3NK6A 5GM8A 3IEFA 4X3MA 1X7PA 4X3LA 3QUVA 4MCDA 4YQCA 3BBHA 2V3KA 4YVHA 4L69A 4XBOA 1J85A 4YQ3A 1Z85A 4YVIA 4YQSA 4YPWA 3L8UA 4CNFA 1V6ZA 4YPYA 3E5YA 4JWFA 4YQOA 4YQAA 1VH0A 1TO0A 4MCCA 2Z0YA 3DCMX 4YQJA 4YPZA 3OIJA 3GYQA 4YQKA 4YQ8A 4YQRA 1IPAA 1V2XA 3OIIA 2EGWA 1VHKA 4JALA 2QWVA 4MCBA 1UAKA 4JWJA 4JWHA 4YQ0A 3ILKA 1ZJRA 3KNUA 4YQLA 4YQ2A 4YQ6A 1NXZA 3AIAA 4YQPA 3AI9X 4YQBA 3O7BA 4JWGA 2O3AA 3N4JA 1O6DA 1X7OA 4FMWA 2QMMA 4H3YA 3KTYA 4J3CA 4YQ5A 4RG1A 1VHYA 4YVGA 4YPXA 4YQGA 3N4KA 3KW2A 5D9FA 4YQIA 4CNGA 4YQQA 1UALA 4KGNA 3BBDA 4YQ7A 4H3ZA 5FAIA 4IG6A 1UAJA 1NS5A 1UAMA 3BBEA 1GZ0A 3IC6A 4E8BA 1MXIA 4JAKA 3KY7A 3OINA 4YVKA 3NK7A 4YQ4A 4YQ1A 4FAKA 1OY5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2EGV A;  3AXZ A;  2I6D A;  4YVJ A;  4YQT A;  2V3J A;  4PZK A;  2HA8 A;  3ONP A;  1P9P A;  5GMC A;  4YQN A;  5GMB A;  1K3R A;  4CNE A;  4YQ9 A;  2YY8 A;  4CND A;  4YQD A;  5CO4 A;  4KDZ A;  2CX8 A;  3NK6 A;  5GM8 A;  3IEF A;  4X3M A;  1X7P A;  4X3L A;  3QUV A;  4MCD A;  4YQC A;  3BBH A;  2V3K A;  4YVH A;  4L69 A;  4XBO A;  1J85 A;  4YQ3 A;  1Z85 A;  4YVI A;  4YQS A;  4YPW A;  3L8U A;  4CNF A;  1V6Z A;  4YPY A;  3E5Y A;  4YQO A;  4YQA A;  1VH0 A;  1TO0 A;  4MCC A;  2Z0Y A;  3DCM X;  4YQJ A;  4YPZ A;  3OIJ A;  3GYQ A;  4YQK A;  4YQ8 A;  4YQR A;  1IPA A;  1V2X A;  3OII A;  2EGW A;  1VHK A;  4JAL A;  2QWV A;  4MCB A;  1UAK A;  4YQ0 A;  3ILK A;  1ZJR A;  3KNU A;  4YQL A;  4YQ2 A;  4YQ6 A;  1NXZ A;  3AIA A;  4YQP A;  3AI9 X;  4YQB A;  3O7B A;  2O3A A;  3N4J A;  1O6D A;  1X7O A;  2QMM A;  4H3Y A;  3KTY A;  4J3C A;  4YQ5 A;  4RG1 A;  1VHY A;  4YVG A;  4YPX A;  4YQG A;  3N4K A;  3KW2 A;  5D9F A;  4YQI A;  4CNG A;  4YQQ A;  1UAL A;  4KGN A;  3BBD A;  4YQ7 A;  4H3Z A;  5FAI A;  4IG6 A;  1UAJ A;  1NS5 A;  1UAM A;  3BBE A;  1GZ0 A;  3IC6 A;  4E8B A;  1MXI A;  4JAK A;  3KY7 A;  3OIN A;  4YVK A;  3NK7 A;  4YQ4 A;  4YQ1 A;  4FAK A;  1OY5 A; 
#chains in the Genus database with same CATH topology
 2EGV A;  3AXZ A;  2I6D A;  4YVJ A;  4YQT A;  2V3J A;  4PZK A;  2HA8 A;  3ONP A;  1P9P A;  5GMC A;  4YQN A;  5GMB A;  1K3R A;  4CNE A;  4YQ9 A;  2YY8 A;  4CND A;  4YQD A;  5CO4 A;  4KDZ A;  2CX8 A;  3NK6 A;  5GM8 A;  3IEF A;  4X3M A;  1X7P A;  4X3L A;  3QUV A;  4MCD A;  4YQC A;  3BBH A;  2V3K A;  4YVH A;  4L69 A;  4XBO A;  1J85 A;  4YQ3 A;  1Z85 A;  4YVI A;  4YQS A;  4YPW A;  3L8U A;  4CNF A;  1V6Z A;  4YPY A;  3E5Y A;  4JWF A;  4YQO A;  4YQA A;  1VH0 A;  1TO0 A;  4MCC A;  2Z0Y A;  3DCM X;  4YQJ A;  4YPZ A;  3OIJ A;  3GYQ A;  4YQK A;  4YQ8 A;  4YQR A;  1IPA A;  1V2X A;  3OII A;  2EGW A;  1VHK A;  4JAL A;  2QWV A;  4MCB A;  1UAK A;  4JWJ A;  4JWH A;  4YQ0 A;  3ILK A;  1ZJR A;  3KNU A;  4YQL A;  4YQ2 A;  4YQ6 A;  1NXZ A;  3AIA A;  4YQP A;  3AI9 X;  4YQB A;  3O7B A;  4JWG A;  2O3A A;  3N4J A;  1O6D A;  1X7O A;  4FMW A;  2QMM A;  4H3Y A;  3KTY A;  4J3C A;  4YQ5 A;  4RG1 A;  1VHY A;  4YVG A;  4YPX A;  4YQG A;  3N4K A;  3KW2 A;  5D9F A;  4YQI A;  4CNG A;  4YQQ A;  1UAL A;  4KGN A;  3BBD A;  4YQ7 A;  4H3Z A;  5FAI A;  4IG6 A;  1UAJ A;  1NS5 A;  1UAM A;  3BBE A;  1GZ0 A;  3IC6 A;  4E8B A;  1MXI A;  4JAK A;  3KY7 A;  3OIN A;  4YVK A;  3NK7 A;  4YQ4 A;  4YQ1 A;  4FAK A;  1OY5 A; 
#chains in the Genus database with same CATH homology
 2EGV A;  3AXZ A;  2I6D A;  4YVJ A;  4YQT A;  2V3J A;  4PZK A;  2HA8 A;  3ONP A;  1P9P A;  5GMC A;  4YQN A;  5GMB A;  1K3R A;  4CNE A;  4YQ9 A;  2YY8 A;  4CND A;  4YQD A;  5CO4 A;  4KDZ A;  2CX8 A;  3NK6 A;  5GM8 A;  3IEF A;  4X3M A;  1X7P A;  4X3L A;  3QUV A;  4MCD A;  4YQC A;  3BBH A;  2V3K A;  4YVH A;  4L69 A;  4XBO A;  1J85 A;  4YQ3 A;  1Z85 A;  4YVI A;  4YQS A;  4YPW A;  3L8U A;  4CNF A;  1V6Z A;  4YPY A;  3E5Y A;  4JWF A;  4YQO A;  4YQA A;  1VH0 A;  1TO0 A;  4MCC A;  2Z0Y A;  3DCM X;  4YQJ A;  4YPZ A;  3OIJ A;  3GYQ A;  4YQK A;  4YQ8 A;  4YQR A;  1IPA A;  1V2X A;  3OII A;  2EGW A;  1VHK A;  4JAL A;  2QWV A;  4MCB A;  1UAK A;  4JWJ A;  4JWH A;  4YQ0 A;  3ILK A;  1ZJR A;  3KNU A;  4YQL A;  4YQ2 A;  4YQ6 A;  1NXZ A;  3AIA A;  4YQP A;  3AI9 X;  4YQB A;  3O7B A;  4JWG A;  2O3A A;  3N4J A;  1O6D A;  1X7O A;  4FMW A;  2QMM A;  4H3Y A;  3KTY A;  4J3C A;  4YQ5 A;  4RG1 A;  1VHY A;  4YVG A;  4YPX A;  4YQG A;  3N4K A;  3KW2 A;  5D9F A;  4YQI A;  4CNG A;  4YQQ A;  1UAL A;  4KGN A;  3BBD A;  4YQ7 A;  4H3Z A;  5FAI A;  4IG6 A;  1UAJ A;  1NS5 A;  1UAM A;  3BBE A;  1GZ0 A;  3IC6 A;  4E8B A;  1MXI A;  4JAK A;  3KY7 A;  3OIN A;  4YVK A;  3NK7 A;  4YQ4 A;  4YQ1 A;  4FAK A;  1OY5 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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