2O4DA

Crystal structure of a hypothetical protein from pseudomonas aeruginosa
Total Genus 52
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
52
sequence length
144
structure length
144
Chain Sequence
TTRLEWAKASPDAYAAMLGLEKALAKAGLERPLIELVYLRTSQINGCAYCVNMHANDARKAGETEQRLQALCVWQETPYFTPRERAALAWTEQLARLSQGALPHGLLDELREHFDDKEIAELTLAVSAINAWNRFGVGMGMQPE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal Structure of a hypothetical protein from Pseudomonas aeruginosa
rcsb
molecule tags Unknown function
source organism Pseudomonas aeruginosa
molecule keywords Hypothetical protein PA0269
total genus 52
structure length 144
sequence length 144
ec nomenclature
pdb deposition date 2006-12-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02627 CMD Carboxymuconolactone decarboxylase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1290.10 Mainly Alpha Up-down Bundle AhpD-like AhpD-like 2o4dA00
5DIKA 1GU9A 3C1LA 2QEUA 2AF7A 4G9QA 5DIPA 2PRRA 1ME5A 2IJCA 1KNCA 2OYOA 2OUWA 1LW1A 2Q0TA 2O4DA 2GMYA 1VKEA 1P8CA 3BEYA 3LVYA 2PFXA 2CWQA 3D7IA
chains in the Genus database with same CATH superfamily
5DIKA 1GU9A 3C1LA 2QEUA 3AAAA 2KXPA 2AF7A 4G9QA 5DIPA 2PRRA 1ME5A 3AA7A 3LK41 5AFUK 3AA0A 3LK2A 1IZNA 2IJCA 2ES9A 1KNCA 2KZ7A 2OYOA 2JN8A 2OUWA 1LW1A 3LK3A 2Q0TA 2O4DA 3AAEA 2GMYA 1VKEA 5ADXK 1P8CA 3BEYA 3LVYA 4AKRA 3AA1A 2PFXA 2CWQA 3D7IA 3AA6A
chains in the Genus database with same CATH topology
5DIKA 1GU9A 3C1LA 2QEUA 3AAAA 2KXPA 2AF7A 4G9QA 5DIPA 2PRRA 1ME5A 3AA7A 3LK41 5AFUK 3AA0A 3LK2A 1IZNA 2IJCA 2ES9A 1KNCA 2KZ7A 2OYOA 2JN8A 2OUWA 1LW1A 3LK3A 2Q0TA 2O4DA 3AAEA 2GMYA 1VKEA 5ADXK 1P8CA 3BEYA 3LVYA 4AKRA 3AA1A 2PFXA 2CWQA 3D7IA 3AA6A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5DIK A;  1GU9 A;  3C1L A;  2QEU A;  2AF7 A;  4G9Q A;  5DIP A;  2PRR A;  1ME5 A;  2IJC A;  1KNC A;  2OYO A;  2OUW A;  1LW1 A;  2Q0T A;  2O4D A;  2GMY A;  1VKE A;  1P8C A;  3BEY A;  3LVY A;  2PFX A;  2CWQ A;  3D7I A; 
#chains in the Genus database with same CATH topology
 5DIK A;  1GU9 A;  3C1L A;  2QEU A;  3AAA A;  2KXP A;  2AF7 A;  4G9Q A;  5DIP A;  2PRR A;  1ME5 A;  3AA7 A;  3LK4 1;  5AFU K;  3AA0 A;  3LK2 A;  1IZN A;  2IJC A;  2ES9 A;  1KNC A;  2KZ7 A;  2OYO A;  2JN8 A;  2OUW A;  1LW1 A;  3LK3 A;  2Q0T A;  2O4D A;  3AAE A;  2GMY A;  1VKE A;  5ADX K;  1P8C A;  3BEY A;  3LVY A;  4AKR A;  3AA1 A;  2PFX A;  2CWQ A;  3D7I A;  3AA6 A; 
#chains in the Genus database with same CATH homology
 5DIK A;  1GU9 A;  3C1L A;  2QEU A;  3AAA A;  2KXP A;  2AF7 A;  4G9Q A;  5DIP A;  2PRR A;  1ME5 A;  3AA7 A;  3LK4 1;  5AFU K;  3AA0 A;  3LK2 A;  1IZN A;  2IJC A;  2ES9 A;  1KNC A;  2KZ7 A;  2OYO A;  2JN8 A;  2OUW A;  1LW1 A;  3LK3 A;  2Q0T A;  2O4D A;  3AAE A;  2GMY A;  1VKE A;  5ADX K;  1P8C A;  3BEY A;  3LVY A;  4AKR A;  3AA1 A;  2PFX A;  2CWQ A;  3D7I A;  3AA6 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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