2O5JE

Crystal structure of the t. thermophilus rnap polymerase elongation complex with the ntp substrate analog
Total Genus 19
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
19
sequence length
95
structure length
95
Chain Sequence
AEPGIDKLFGMVDSKYRLTVVVAKRAQQLLRHGFKNTVLEPEERPKMQTLEGLFDDPNAVTWAMKELLTGRLVFGENLVPEDRLQKEMERLYPVE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase/dna-rna hybrid
molecule keywords 5'-D(P*CP*CP*CP*TP*GP*TP*CP*TP*GP*GP*CP*GP*TP*TP*CP*GP*CP*GP
publication title Structural basis for substrate loading in bacterial RNA polymerase.
pubmed doi rcsb
total genus 19
structure length 95
sequence length 95
chains with identical sequence O
ec nomenclature ec 2.7.7.6: DNA-directed RNA polymerase.
pdb deposition date 2006-12-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
E PF01192 RNA_pol_Rpb6 RNA polymerase Rpb6
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.940.10 Alpha Beta Alpha-Beta Complex Eukaryotic RPB6 RNA polymerase subunit Eukaryotic RPB6 RNA polymerase subunit 2o5jE00
4BXXF 4A93F 2NVQF 3HOZF 1K83F 5D4EE 4LK1E 3I4NF 4LJZE 3PO2F 1I50F 4Y7NF 4JK1E 5IYBF 3GTQF 3S14F 4A3MF 5M3MF 4BBRF 1Y1WF 4G7HE 5TMFE 5C44F 4A3CF 3HOYF 3K7AF 4BBSF 4KMUE 3CQZF 3S16F 4XLNE 4A3EF 2A6HE 4A3KF 3S1RF 2B63F 5D4CE 1R9TF 4YFXE 2BE5E 2NVXF 2R92F 1HQME 2R7ZF 4C3JF 4C3IF 2YU9F 2O5IE 5C4XF 4Q4ZE 3H0GF 4AYBK 4G7ZE 3GTLF 5FLMF 2WAQK 4KN7E 4A3DF 4MEYE 2JA6F 3S15F 4KN4E 4A3LF 4YFKE 3RZOF 3GTKF 3GTGF 1TWHF 1SMYE 2NVTF 1ZYRE 2E2JF 4BY1F 4A3BF 1I3QF 3S2DF 4OIPE 2JA7F 3FKIF 5E18E 3GTOF 2Y0SI 2VUMF 3HOXF 1Y1VF 3GTJF 4MQ9E 4OIRE 3HOWF 5IYCF 1QKLA 5FJ8F 3I4MF 1TWGF 2A68E 5M3FF 1IW7E 2NVYF 4A3IF 5C4JF 3M3YF 3PO3F 2PPBE 3WODE 4Q5SE 4LK0E 5IYDF 4XSZE 5IPLE 1YNJK 4YG2E 2CW0E 3GTMF 4OIOE 2JA8F 3S17F 2O5JE 3HOUF 1YNNK 5BYHE 2PMZK 4G7OE 1I6HF 2A69E 4A3JF 4YFNE 5M5YF 3H3VG 3S2HF 1TWAF 2R93F 4BY7F 3S1QF 3GTPF 5IP9F 4LLGE 4MEXE 3RZDF 4A3GF 4C2MF 1TWFF 3EQLE 5IP7F 4OIQE 3S1MF 4A3FF 3DXJE 5D4DE 3S1NF 5TMCE 1TWCF 2JA5F 2E2HF 2A6EE 4XLPE 1WCMF 4GZYE 3HKZK 3M4OF 2WB1I 5E17E 5M5XF 1I6VE 4Y52F 4XSXE 4C3HF 4X6AF 4OINE 5M5WF 5C3EF 1SFOF 2E2IF 3HOVF 4ZH4E
chains in the Genus database with same CATH superfamily
3GTKE 3GTGE 4A93F 4BXXF 1TWHE 2NVQF 2NVTE 3HOZF 1K83F 5D4EE 4LK1E 2E2JE 3I4NF 4LJZE 3PO2F 1I50F 4Y7NF 4BY1E 4JK1E 4A3BE 5IYBF 2JA8E 3GTQF 4A3MF 3S14F 1I3QE 5M3MF 1EIKA 3S2DE 2JA7E 4BBRF 3FKIE 1Y1WF 4G7HE 5TMFE 2PMZH 5C44F 2VUME 3GTOE 3HOYF 3K7AF 4A3CF 4BBSF 4KMUE 3CQZF 1Y1VE 3S16F 3GTJE 4XLNE 4A3EF 3HOWE 2A6HE 4A3KF 5IYCE 3S1RF 5FJ8E 2B63F 5D4CE 1R9TF 3I4ME 1TWGE 5M3FE 4YFXE 2BE5E 2NVXF 2NVYE 2R92F 4A3IE 5C4JE 3S1NE 1HQME 3PO3E 2Y0SH 4C3JF 2R7ZF 4C3IF 5IYDE 2YU9F 2O5IE 5C4XF 3HKZH 3M4OE 4Q4ZE 3H0GF 4AYBK 4G7ZE 3GTLF 5FLMF 2WAQK 4KN7E 4A3DF 3GTME 1DZFA 4MEYE 3S17E 2JA6F 3S15F 4KN4E 3HOUE 4A3LF 4YFKE 1I6HE 3RZOF 3GTKF 3GTGF 4A3JE 1TWHF 5M5YE 3S2HE 1TWAE 1SMYE 2NVTF 2WB1H 2R93E 3S1QE 4BY7E 1ZYRE 2E2JF 5IYBE 3GTPE 5IP9E 4BY1F 4A3BF 3RZDE 4A3GE 4C2ME 1TWFE 1I3QF 5IP7E 3S1ME 4A3FE 4OIPE 2JA7F 3S2DF 3FKIF 5E18E 3GTOF 1TWCE 2Y0SI 2E2HE 2JA5E 2VUMF 3HOXF 1WCME 1Y1VF 4QIWK 3GTJF 4MQ9E 4OIRE 3HOWF 5IYCF 5M5XE 4Y52E 1QKLA 5FJ8F 3I4MF 1TWGF 4C3HE 4X6AE 2A68E 5M3FF 5M5WE 5C3EE 1IW7E 1SFOE 2E2IE 2NVYF 3HOVE 4A3IF 5C4JF 4C3JE 3M3YF 3PO3F 2YU9E 2PPBE 3WODE 4Q5SE 4A93E 4LK0E 4BXXE 5C4XE 5IYDF 2NVQE 3HOZE 1K83E 3GTLE 4XSZE 3I4NE 3PO2E 5IPLE 1I50E 1YNJK 4YG2E 4Y7NE 3GTQE 3S14E 4A3ME 2CW0E 3GTMF 5M3ME 4OIOE 2JA8F 3S17F 4BBRE 2O5JE 3HOUF 3RZOE 1YNNK 5BYHE 2PMZK 1Y1WE 5C44E 1I6HF 4G7OE 3HOYE 4A3CE 3K7AE 4BBSE 2A69E 3CQZE 4A3JF 4YFNE 3S16E 5M5YF 3H3VG 3S2HF 4A3EE 1TWAF 4A3KE 2R93F 4BY7F 3S1QF 3GTPF 3S1RE 5IP9F 2B63E 4LLGE 1R9TE 3RZDF 2KRXA 4MEXE 4C2MF 1TWFF 3EQLE 3H3VF 5IP7F 4A3GF 2NVXE 4OIQE 4A3FF 3S1MF 2R92E 3DXJE 5D4DE 3S1NF 5TMCE 3HOXE 1TWCF 2R7ZE 2JA5F 2E2HF 2A6EE 4C3IE 4XLPE 1WCMF 4GZYE 3HKZK 4QIWH 3H0GE 3M4OF 2WB1I 5FLME 5E17E 5M5XF 4AYBH 1I6VE 4Y52F 4A3DE 4XSXE 4C3HF 4X6AF 4OINE 2WAQH 5M5WF 2JA6E 5C3EF 1SFOF 2E2IF 3HOVF 3M3YE 3S15E 4A3LE 4ZH4E
chains in the Genus database with same CATH topology
4BXXF 4A93F 2NVQF 3HOZF 1K83F 5D4EE 4LK1E 3I4NF 4LJZE 3PO2F 1I50F 4Y7NF 4JK1E 5IYBF 3GTQF 3S14F 4A3MF 5M3MF 4BBRF 1Y1WF 4G7HE 5TMFE 5C44F 4A3CF 3HOYF 3K7AF 4BBSF 4KMUE 3CQZF 3S16F 4XLNE 4A3EF 2A6HE 4A3KF 3S1RF 2B63F 5D4CE 1R9TF 4YFXE 2BE5E 2NVXF 2R92F 1HQME 2R7ZF 4C3JF 4C3IF 2YU9F 2O5IE 5C4XF 4Q4ZE 3H0GF 4AYBK 4G7ZE 3GTLF 5FLMF 2WAQK 4KN7E 4A3DF 4MEYE 2JA6F 3S15F 4KN4E 4A3LF 4YFKE 3RZOF 3GTKF 3GTGF 1TWHF 1SMYE 2NVTF 1ZYRE 2E2JF 4BY1F 4A3BF 1I3QF 3S2DF 4OIPE 2JA7F 3FKIF 5E18E 3GTOF 2Y0SI 2VUMF 3HOXF 1Y1VF 4QIWK 3GTJF 4MQ9E 4OIRE 3HOWF 5IYCF 1QKLA 5FJ8F 3I4MF 1TWGF 2A68E 5M3FF 1IW7E 2NVYF 4A3IF 5C4JF 3M3YF 3PO3F 2PPBE 3WODE 4Q5SE 4LK0E 5IYDF 4XSZE 5IPLE 1YNJK 4YG2E 2CW0E 3GTMF 4OIOE 2JA8F 3S17F 2O5JE 3HOUF 1YNNK 5BYHE 2PMZK 4G7OE 1I6HF 2A69E 4A3JF 4YFNE 5M5YF 3H3VG 3S2HF 1TWAF 2R93F 4BY7F 3S1QF 3GTPF 5IP9F 4LLGE 4MEXE 3RZDF 2KRXA 4A3GF 4C2MF 1TWFF 3EQLE 5IP7F 4OIQE 3S1MF 4A3FF 3DXJE 5D4DE 3S1NF 5TMCE 1TWCF 2JA5F 2E2HF 2A6EE 4XLPE 1WCMF 4GZYE 3HKZK 3M4OF 2WB1I 5E17E 5M5XF 1I6VE 4Y52F 4XSXE 4C3HF 4X6AF 4OINE 5M5WF 5C3EF 1SFOF 2E2IF 3HOVF 4ZH4E
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4BXX F;  4A93 F;  2NVQ F;  3HOZ F;  1K83 F;  5D4E E;  4LK1 E;  3I4N F;  4LJZ E;  3PO2 F;  1I50 F;  4Y7N F;  4JK1 E;  5IYB F;  3GTQ F;  3S14 F;  4A3M F;  5M3M F;  4BBR F;  1Y1W F;  4G7H E;  5TMF E;  5C44 F;  4A3C F;  3HOY F;  3K7A F;  4BBS F;  4KMU E;  3CQZ F;  3S16 F;  4XLN E;  4A3E F;  2A6H E;  4A3K F;  3S1R F;  2B63 F;  5D4C E;  1R9T F;  4YFX E;  2BE5 E;  2NVX F;  2R92 F;  1HQM E;  2R7Z F;  4C3J F;  4C3I F;  2YU9 F;  2O5I E;  5C4X F;  4Q4Z E;  3H0G F;  4AYB K;  4G7Z E;  3GTL F;  5FLM F;  2WAQ K;  4KN7 E;  4A3D F;  4MEY E;  2JA6 F;  3S15 F;  4KN4 E;  4A3L F;  4YFK E;  3RZO F;  3GTK F;  3GTG F;  1TWH F;  1SMY E;  2NVT F;  1ZYR E;  2E2J F;  4BY1 F;  4A3B F;  1I3Q F;  3S2D F;  4OIP E;  2JA7 F;  3FKI F;  5E18 E;  3GTO F;  2Y0S I;  2VUM F;  3HOX F;  1Y1V F;  3GTJ F;  4MQ9 E;  4OIR E;  3HOW F;  5IYC F;  1QKL A;  5FJ8 F;  3I4M F;  1TWG F;  2A68 E;  5M3F F;  1IW7 E;  2NVY F;  4A3I F;  5C4J F;  3M3Y F;  3PO3 F;  2PPB E;  3WOD E;  4Q5S E;  4LK0 E;  5IYD F;  4XSZ E;  5IPL E;  1YNJ K;  4YG2 E;  2CW0 E;  3GTM F;  4OIO E;  2JA8 F;  3S17 F;  2O5J E;  3HOU F;  1YNN K;  5BYH E;  2PMZ K;  4G7O E;  1I6H F;  2A69 E;  4A3J F;  4YFN E;  5M5Y F;  3H3V G;  3S2H F;  1TWA F;  2R93 F;  4BY7 F;  3S1Q F;  3GTP F;  5IP9 F;  4LLG E;  4MEX E;  3RZD F;  4A3G F;  4C2M F;  1TWF F;  3EQL E;  5IP7 F;  4OIQ E;  3S1M F;  4A3F F;  3DXJ E;  5D4D E;  3S1N F;  5TMC E;  1TWC F;  2JA5 F;  2E2H F;  2A6E E;  4XLP E;  1WCM F;  4GZY E;  3HKZ K;  3M4O F;  2WB1 I;  5E17 E;  5M5X F;  1I6V E;  4Y52 F;  4XSX E;  4C3H F;  4X6A F;  4OIN E;  5M5W F;  5C3E F;  1SFO F;  2E2I F;  3HOV F;  4ZH4 E; 
#chains in the Genus database with same CATH topology
 3GTK E;  3GTG E;  4A93 F;  4BXX F;  1TWH E;  2NVQ F;  2NVT E;  3HOZ F;  1K83 F;  5D4E E;  4LK1 E;  2E2J E;  3I4N F;  4LJZ E;  3PO2 F;  1I50 F;  4Y7N F;  4BY1 E;  4JK1 E;  4A3B E;  5IYB F;  2JA8 E;  3GTQ F;  4A3M F;  3S14 F;  1I3Q E;  5M3M F;  1EIK A;  3S2D E;  2JA7 E;  4BBR F;  3FKI E;  1Y1W F;  4G7H E;  5TMF E;  2PMZ H;  5C44 F;  2VUM E;  3GTO E;  3HOY F;  3K7A F;  4A3C F;  4BBS F;  4KMU E;  3CQZ F;  1Y1V E;  3S16 F;  3GTJ E;  4XLN E;  4A3E F;  3HOW E;  2A6H E;  4A3K F;  5IYC E;  3S1R F;  5FJ8 E;  2B63 F;  5D4C E;  1R9T F;  3I4M E;  1TWG E;  5M3F E;  4YFX E;  2BE5 E;  2NVX F;  2NVY E;  2R92 F;  4A3I E;  5C4J E;  3S1N E;  1HQM E;  3PO3 E;  2Y0S H;  4C3J F;  2R7Z F;  4C3I F;  5IYD E;  2YU9 F;  2O5I E;  5C4X F;  3HKZ H;  3M4O E;  4Q4Z E;  3H0G F;  4AYB K;  4G7Z E;  3GTL F;  5FLM F;  2WAQ K;  4KN7 E;  4A3D F;  3GTM E;  1DZF A;  4MEY E;  3S17 E;  2JA6 F;  3S15 F;  4KN4 E;  3HOU E;  4A3L F;  4YFK E;  1I6H E;  3RZO F;  3GTK F;  3GTG F;  4A3J E;  1TWH F;  5M5Y E;  3S2H E;  1TWA E;  1SMY E;  2NVT F;  2WB1 H;  2R93 E;  3S1Q E;  4BY7 E;  1ZYR E;  2E2J F;  5IYB E;  3GTP E;  5IP9 E;  4BY1 F;  4A3B F;  3RZD E;  4A3G E;  4C2M E;  1TWF E;  1I3Q F;  5IP7 E;  3S1M E;  4A3F E;  4OIP E;  2JA7 F;  3S2D F;  3FKI F;  5E18 E;  3GTO F;  1TWC E;  2Y0S I;  2E2H E;  2JA5 E;  2VUM F;  3HOX F;  1WCM E;  1Y1V F;  4QIW K;  3GTJ F;  4MQ9 E;  4OIR E;  3HOW F;  5IYC F;  5M5X E;  4Y52 E;  1QKL A;  5FJ8 F;  3I4M F;  1TWG F;  4C3H E;  4X6A E;  2A68 E;  5M3F F;  5M5W E;  5C3E E;  1IW7 E;  1SFO E;  2E2I E;  2NVY F;  3HOV E;  4A3I F;  5C4J F;  4C3J E;  3M3Y F;  3PO3 F;  2YU9 E;  2PPB E;  3WOD E;  4Q5S E;  4A93 E;  4LK0 E;  4BXX E;  5C4X E;  5IYD F;  2NVQ E;  3HOZ E;  1K83 E;  3GTL E;  4XSZ E;  3I4N E;  3PO2 E;  5IPL E;  1I50 E;  1YNJ K;  4YG2 E;  4Y7N E;  3GTQ E;  3S14 E;  4A3M E;  2CW0 E;  3GTM F;  5M3M E;  4OIO E;  2JA8 F;  3S17 F;  4BBR E;  2O5J E;  3HOU F;  3RZO E;  1YNN K;  5BYH E;  2PMZ K;  1Y1W E;  5C44 E;  1I6H F;  4G7O E;  3HOY E;  4A3C E;  3K7A E;  4BBS E;  2A69 E;  3CQZ E;  4A3J F;  4YFN E;  3S16 E;  5M5Y F;  3H3V G;  3S2H F;  4A3E E;  1TWA F;  4A3K E;  2R93 F;  4BY7 F;  3S1Q F;  3GTP F;  3S1R E;  5IP9 F;  2B63 E;  4LLG E;  1R9T E;  3RZD F;  2KRX A;  4MEX E;  4C2M F;  1TWF F;  3EQL E;  3H3V F;  5IP7 F;  4A3G F;  2NVX E;  4OIQ E;  4A3F F;  3S1M F;  2R92 E;  3DXJ E;  5D4D E;  3S1N F;  5TMC E;  3HOX E;  1TWC F;  2R7Z E;  2JA5 F;  2E2H F;  2A6E E;  4C3I E;  4XLP E;  1WCM F;  4GZY E;  3HKZ K;  4QIW H;  3H0G E;  3M4O F;  2WB1 I;  5FLM E;  5E17 E;  5M5X F;  4AYB H;  1I6V E;  4Y52 F;  4A3D E;  4XSX E;  4C3H F;  4X6A F;  4OIN E;  2WAQ H;  5M5W F;  2JA6 E;  5C3E F;  1SFO F;  2E2I F;  3HOV F;  3M3Y E;  3S15 E;  4A3L E;  4ZH4 E; 
#chains in the Genus database with same CATH homology
 4BXX F;  4A93 F;  2NVQ F;  3HOZ F;  1K83 F;  5D4E E;  4LK1 E;  3I4N F;  4LJZ E;  3PO2 F;  1I50 F;  4Y7N F;  4JK1 E;  5IYB F;  3GTQ F;  3S14 F;  4A3M F;  5M3M F;  4BBR F;  1Y1W F;  4G7H E;  5TMF E;  5C44 F;  4A3C F;  3HOY F;  3K7A F;  4BBS F;  4KMU E;  3CQZ F;  3S16 F;  4XLN E;  4A3E F;  2A6H E;  4A3K F;  3S1R F;  2B63 F;  5D4C E;  1R9T F;  4YFX E;  2BE5 E;  2NVX F;  2R92 F;  1HQM E;  2R7Z F;  4C3J F;  4C3I F;  2YU9 F;  2O5I E;  5C4X F;  4Q4Z E;  3H0G F;  4AYB K;  4G7Z E;  3GTL F;  5FLM F;  2WAQ K;  4KN7 E;  4A3D F;  4MEY E;  2JA6 F;  3S15 F;  4KN4 E;  4A3L F;  4YFK E;  3RZO F;  3GTK F;  3GTG F;  1TWH F;  1SMY E;  2NVT F;  1ZYR E;  2E2J F;  4BY1 F;  4A3B F;  1I3Q F;  3S2D F;  4OIP E;  2JA7 F;  3FKI F;  5E18 E;  3GTO F;  2Y0S I;  2VUM F;  3HOX F;  1Y1V F;  4QIW K;  3GTJ F;  4MQ9 E;  4OIR E;  3HOW F;  5IYC F;  1QKL A;  5FJ8 F;  3I4M F;  1TWG F;  2A68 E;  5M3F F;  1IW7 E;  2NVY F;  4A3I F;  5C4J F;  3M3Y F;  3PO3 F;  2PPB E;  3WOD E;  4Q5S E;  4LK0 E;  5IYD F;  4XSZ E;  5IPL E;  1YNJ K;  4YG2 E;  2CW0 E;  3GTM F;  4OIO E;  2JA8 F;  3S17 F;  2O5J E;  3HOU F;  1YNN K;  5BYH E;  2PMZ K;  4G7O E;  1I6H F;  2A69 E;  4A3J F;  4YFN E;  5M5Y F;  3H3V G;  3S2H F;  1TWA F;  2R93 F;  4BY7 F;  3S1Q F;  3GTP F;  5IP9 F;  4LLG E;  4MEX E;  3RZD F;  2KRX A;  4A3G F;  4C2M F;  1TWF F;  3EQL E;  5IP7 F;  4OIQ E;  3S1M F;  4A3F F;  3DXJ E;  5D4D E;  3S1N F;  5TMC E;  1TWC F;  2JA5 F;  2E2H F;  2A6E E;  4XLP E;  1WCM F;  4GZY E;  3HKZ K;  3M4O F;  2WB1 I;  5E17 E;  5M5X F;  1I6V E;  4Y52 F;  4XSX E;  4C3H F;  4X6A F;  4OIN E;  5M5W F;  5C3E F;  1SFO F;  2E2I F;  3HOV F;  4ZH4 E; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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