2O78A

Tyrosine ammonia-lyase from rhodobacter sphaeroides (his89phe variant) complexed with cinnamic acid
Total Genus 194
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
194
sequence length
515
structure length
514
Chain Sequence
PKPAVELDRHIDLDQAHAVASGGARIVLAPPARDRCRASEARLGAVIREARHVYGLTTGFGPLANRLISGENVRTLQANLVHFLASGVGPVLDWTTARAMVLARLVSIAQGASGASEGTIARLIDLLNSELAPAVPSRGTVGDLTPLAHMVLCLQGRGDFLDRDGTRLDGAEGLRRGRLQPLDLSHRDALALVNGTSAMTGIALVNAHACRHLGNWAVALTALLAECLRGRTEAWAAALSDLRPHPGQKDAAARLRARVDGSARVVRHVIAERRLDAGDIGTEPEAGQDAYSLRCAPQVLGAGFDTLAWHDRVLTIELNAVTDNPVFPPDGSVPALHGGNFMGQHVALTSDALATAVTVLAGLAERQIARLTDERLNRGLPPFLHRGPAGLNSGFMGAQVTATALLAEMRATGPASIHSISTNAANQDVVSLGTIAARLCREKIDRWAEILAILALCLAQAAELRCGSGLDGVSPAGKKLVQALREQFPPLETDRPLGQEIAALATHLLQQSPV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Lyase
molecule keywords Putative histidine ammonia-lyase
publication title Structural determinants and modulation of substrate specificity in phenylalanine-tyrosine ammonia-lyases.
pubmed doi rcsb
source organism Rhodobacter sphaeroides
total genus 194
structure length 514
sequence length 515
chains with identical sequence B, C, D, E, F, G, H
ec nomenclature ec 4.3.1.23: Tyrosine ammonia-lyase.
pdb deposition date 2006-12-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00221 Lyase_aromatic Aromatic amino acid lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.275.10 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase/aspartase (N-terminal domain) 2o78A01
1.20.200.10 Mainly Alpha Up-down Bundle Fumarase C; Chain A, domain 2 Fumarase/aspartase (Central domain) 2o78A02
1YISA 5EYVA 3NO9A 1HY0A 4ADLA 4CQ5A 3R6YA 4C6GA 1FURA 2PFMA 4EEIA 3RD8A 2FUSA 4C5SA 2NYFA 3R6VA 4V2QA 1I0AA 2HVGA 5F92A 2NYNA 1TJ7A 2O7BA 3OCEA 1EB4A 1C3CA 1U16A 1VDKA 4BABA 1J3UA 4V2RA 1TJWA 2O78A 2QGAB 3GTDA 1T6JA 2OHYA 1K7WA 4APAA 4FFXA 1C3UA 1DOFA 4EFCA 5D6BA 2QVEA 4APBA 2O7EA 4NLEA 2PTRA 1TJVA 2J91A 2O7DA 1GK2A 1Q5NA 4NSLA 5EYTA 3E04A 1GK3A 1T6PA 3RRPA 3TV2A 4C5RA 1Y2MA 2YIIA 2VD6A 2PTQA 5F91A 1B8FA 2PTSA 1GKMA 2RJRA 3KDYA 1JSWA 3GZHA 1FUOA 1YFMA 1GKJA 3BHGA 4BAAA 1FUQA 4FLCA 4ADMA 1RE5A 3QBPA 4C5UA 1YFEA 2E9FA 1DCNA 2RJSA 3C8TA 1FUPA 2O6YA 2X75A 3OCFA 1HY1A 2O7FA 3KDZA 4MX2A 1KQ7A 3CZOA 1W27A 4HGVA 3UNVA 1U15A 5HW2A 1K62A 1XWOA 3NZ4A 1TJUA 1AUWA 3R6QA
chains in the Genus database with same CATH superfamily
3CRVA 1YISA 5EYVA 3NO9A 1HY0A 4ADLA 4CQ5A 3R6YA 4C6GA 1FURA 2PFMA 2VSFA 4EEIA 3RD8A 2FUSA 4C5SA 2NYFA 4A15A 3R6VA 1XL7A 4V2QA 1I0AA 2HVGA 5F92A 2NYNA 1TJ7A 3CRW1 2O7BA 3OCEA 1EB4A 1C3CA 1U16A 1VDKA 4WNLA 4BABA 1J3UA 4V2RA 1TJWA 2O78A 2QGAB 3GTDA 1T6JA 2OHYA 1K7WA 4APAA 4FFXA 1C3UA 1DOFA 4EFCA 5D6BA 2QVEA 4APBA 2O7EA 4NLEA 2PTRA 1TJVA 2J91A 2O7DA 1GK2A 1Q5NA 1XL8A 4NSLA 5EYTA 3E04A 1GK3A 1T6PA 3RRPA 3TV2A 4C5RA 1Y2MA 2YIIA 2FENA 2VD6A 2PTQA 5F91A 1B8FA 2PTSA 1GKMA 2RJRA 3KDYA 1JSWA 3GZHA 1FUOA 1XMDA 1YFMA 1XMCA 5M0IA 1GKJA 3BHGA 4BAAA 1FUQA 4FLCA 4ADMA 1RE5A 3QBPA 4C5UA 1YFEA 2FELA 2E9FA 1DCNA 2RJSA 3C8TA 1FUPA 2O6YA 5M0JA 5H8WA 2VL7A 2X75A 3OCFA 1HY1A 2O7FA 3KDZA 4MX2A 1KQ7A 3CZOA 1W27A 4HGVA 3UNVA 1U15A 1XLYA 5HW2A 1K62A 1XWOA 3NZ4A 1TJUA 1AUWA 3R6QA
chains in the Genus database with same CATH topology
1YISA 5EYVA 3NO9A 1HY0A 4ADLA 4CQ5A 3R6YA 4C6GA 1FURA 2PFMA 4EEIA 3RD8A 2FUSA 4C5SA 2NYFA 3R6VA 4V2QA 1I0AA 2HVGA 5F92A 2NYNA 1TJ7A 2O7BA 3OCEA 1EB4A 1C3CA 1U16A 1VDKA 4BABA 1J3UA 4V2RA 1TJWA 2O78A 2QGAB 3GTDA 1T6JA 2OHYA 1K7WA 4APAA 4FFXA 1C3UA 1DOFA 4EFCA 5D6BA 2QVEA 4APBA 2O7EA 4NLEA 2PTRA 1TJVA 2J91A 2O7DA 1GK2A 1Q5NA 4NSLA 5EYTA 3E04A 1GK3A 1T6PA 3RRPA 3TV2A 4C5RA 1Y2MA 2YIIA 2VD6A 2PTQA 5F91A 1B8FA 2PTSA 1GKMA 2RJRA 3KDYA 1JSWA 3GZHA 1FUOA 1YFMA 1GKJA 3BHGA 4BAAA 1FUQA 4FLCA 4ADMA 1RE5A 3QBPA 4C5UA 1YFEA 2E9FA 1DCNA 2RJSA 3C8TA 1FUPA 2O6YA 2X75A 3OCFA 1HY1A 2O7FA 3KDZA 4MX2A 1KQ7A 3CZOA 1W27A 4HGVA 3UNVA 1U15A 5HW2A 1K62A 1XWOA 3NZ4A 1TJUA 1AUWA 3R6QA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1YIS A;  5EYV A;  3NO9 A;  1HY0 A;  4ADL A;  4CQ5 A;  3R6Y A;  4C6G A;  1FUR A;  2PFM A;  4EEI A;  3RD8 A;  2FUS A;  4C5S A;  2NYF A;  3R6V A;  4V2Q A;  1I0A A;  2HVG A;  5F92 A;  2NYN A;  1TJ7 A;  2O7B A;  3OCE A;  1EB4 A;  1C3C A;  1U16 A;  1VDK A;  4BAB A;  1J3U A;  4V2R A;  1TJW A;  2O78 A;  2QGA B;  3GTD A;  1T6J A;  2OHY A;  1K7W A;  4APA A;  4FFX A;  1C3U A;  1DOF A;  4EFC A;  5D6B A;  2QVE A;  4APB A;  2O7E A;  4NLE A;  2PTR A;  1TJV A;  2J91 A;  2O7D A;  1GK2 A;  1Q5N A;  4NSL A;  5EYT A;  3E04 A;  1GK3 A;  1T6P A;  3RRP A;  3TV2 A;  4C5R A;  1Y2M A;  2YII A;  2VD6 A;  2PTQ A;  5F91 A;  1B8F A;  2PTS A;  1GKM A;  2RJR A;  3KDY A;  1JSW A;  3GZH A;  1FUO A;  1YFM A;  1GKJ A;  3BHG A;  4BAA A;  1FUQ A;  4FLC A;  4ADM A;  1RE5 A;  3QBP A;  4C5U A;  1YFE A;  2E9F A;  1DCN A;  2RJS A;  3C8T A;  1FUP A;  2O6Y A;  2X75 A;  3OCF A;  1HY1 A;  2O7F A;  3KDZ A;  4MX2 A;  1KQ7 A;  3CZO A;  1W27 A;  4HGV A;  3UNV A;  1U15 A;  5HW2 A;  1K62 A;  1XWO A;  3NZ4 A;  1TJU A;  1AUW A;  3R6Q A; 
#chains in the Genus database with same CATH topology
 3CRV A;  1YIS A;  5EYV A;  3NO9 A;  1HY0 A;  4ADL A;  4CQ5 A;  3R6Y A;  4C6G A;  1FUR A;  2PFM A;  2VSF A;  4EEI A;  3RD8 A;  2FUS A;  4C5S A;  2NYF A;  4A15 A;  3R6V A;  1XL7 A;  4V2Q A;  1I0A A;  2HVG A;  5F92 A;  2NYN A;  1TJ7 A;  3CRW 1;  2O7B A;  3OCE A;  1EB4 A;  1C3C A;  1U16 A;  1VDK A;  4WNL A;  4BAB A;  1J3U A;  4V2R A;  1TJW A;  2O78 A;  2QGA B;  3GTD A;  1T6J A;  2OHY A;  1K7W A;  4APA A;  4FFX A;  1C3U A;  1DOF A;  4EFC A;  5D6B A;  2QVE A;  4APB A;  2O7E A;  4NLE A;  2PTR A;  1TJV A;  2J91 A;  2O7D A;  1GK2 A;  1Q5N A;  1XL8 A;  4NSL A;  5EYT A;  3E04 A;  1GK3 A;  1T6P A;  3RRP A;  3TV2 A;  4C5R A;  1Y2M A;  2YII A;  2FEN A;  2VD6 A;  2PTQ A;  5F91 A;  1B8F A;  2PTS A;  1GKM A;  2RJR A;  3KDY A;  1JSW A;  3GZH A;  1FUO A;  1XMD A;  1YFM A;  1XMC A;  5M0I A;  1GKJ A;  3BHG A;  4BAA A;  1FUQ A;  4FLC A;  4ADM A;  1RE5 A;  3QBP A;  4C5U A;  1YFE A;  2FEL A;  2E9F A;  1DCN A;  2RJS A;  3C8T A;  1FUP A;  2O6Y A;  5M0J A;  5H8W A;  2VL7 A;  2X75 A;  3OCF A;  1HY1 A;  2O7F A;  3KDZ A;  4MX2 A;  1KQ7 A;  3CZO A;  1W27 A;  4HGV A;  3UNV A;  1U15 A;  1XLY A;  5HW2 A;  1K62 A;  1XWO A;  3NZ4 A;  1TJU A;  1AUW A;  3R6Q A; 
#chains in the Genus database with same CATH homology
 1YIS A;  5EYV A;  3NO9 A;  1HY0 A;  4ADL A;  4CQ5 A;  3R6Y A;  4C6G A;  1FUR A;  2PFM A;  4EEI A;  3RD8 A;  2FUS A;  4C5S A;  2NYF A;  3R6V A;  4V2Q A;  1I0A A;  2HVG A;  5F92 A;  2NYN A;  1TJ7 A;  2O7B A;  3OCE A;  1EB4 A;  1C3C A;  1U16 A;  1VDK A;  4BAB A;  1J3U A;  4V2R A;  1TJW A;  2O78 A;  2QGA B;  3GTD A;  1T6J A;  2OHY A;  1K7W A;  4APA A;  4FFX A;  1C3U A;  1DOF A;  4EFC A;  5D6B A;  2QVE A;  4APB A;  2O7E A;  4NLE A;  2PTR A;  1TJV A;  2J91 A;  2O7D A;  1GK2 A;  1Q5N A;  4NSL A;  5EYT A;  3E04 A;  1GK3 A;  1T6P A;  3RRP A;  3TV2 A;  4C5R A;  1Y2M A;  2YII A;  2VD6 A;  2PTQ A;  5F91 A;  1B8F A;  2PTS A;  1GKM A;  2RJR A;  3KDY A;  1JSW A;  3GZH A;  1FUO A;  1YFM A;  1GKJ A;  3BHG A;  4BAA A;  1FUQ A;  4FLC A;  4ADM A;  1RE5 A;  3QBP A;  4C5U A;  1YFE A;  2E9F A;  1DCN A;  2RJS A;  3C8T A;  1FUP A;  2O6Y A;  2X75 A;  3OCF A;  1HY1 A;  2O7F A;  3KDZ A;  4MX2 A;  1KQ7 A;  3CZO A;  1W27 A;  4HGV A;  3UNV A;  1U15 A;  5HW2 A;  1K62 A;  1XWO A;  3NZ4 A;  1TJU A;  1AUW A;  3R6Q A; 
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