The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
119
|
sequence length |
345
|
structure length |
340
|
Chain Sequence |
HKIRVGDALLGRLIDGIGRPMESNIVAPYLPFERSLYAEPPRQVIDQPFILGVRAIDGLLTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQSTLSKCVLVVTTSDRPALERMKAAFTATTIAEYFRDQGKNVLLMMDSVTRYARAARDVGLASGEPDVRGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVNDPIGDEVRSILDGHIVLTRELAEENHFPAIDIGLSASRVMHNVVTSEHLRAAAECKKLIATYKNPELLIRIGEYMGQDPEADKAIKNRKLIQNFIQQSTKDISSYEKTIESLFKVVA
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Structural analysis of a prototypical ATPase from the type III secretion system.
pubmed doi rcsb |
| molecule keywords |
EscN
|
| source organism |
Escherichia coli o127:h6
|
| molecule tags |
Hydrolase
|
| total genus |
119
|
| structure length |
340
|
| sequence length |
345
|
| ec nomenclature | |
| pdb deposition date | 2006-12-19 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00006 | ATP-synt_ab | ATP synthase alpha/beta family, nucleotide-binding domain |
| A | PF18269 | T3SS_ATPase_C | T3SS EscN ATPase C-terminal domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Up-down Bundle | Substrate Binding Domain Of Dnak; Chain:A; Domain 2 | Substrate Binding Domain Of Dnak; Chain:A; Domain 2 | ||
| Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | P-loop containing nucleotide triphosphate hydrolases |
