2ODJA

Crystal structure of the outer membrane protein oprd from pseudomonas aeruginosa
Total Genus 93
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
93
sequence length
426
structure length
382
Chain Sequence
GMFVSDQAEAKGFIEDSSLDLLLRNYYFNRDGKRVDWTQGFLTTYESGFTQGTVGFGVDAFGYLGLKLDGTDYSRAGGAVKVRISKTMLKWGEMQPTAPVFAAGGSRLFPQTATGFQLQSSEFEGLDLEAGHFTEELYATYAGETAKSADFIGGRYAITDNLSASLYGAELEDIYRQYYLNSNYTIPLASDQSLGFDFNIYRTNDEGKAKAGDISNTTWSLAAAYTLDAHTFTLAYQKVHGDQPFDYIGFGSIFLANSVQYSDFNGPGEKSWQARYDLNLASYGVPGLTFMVRYINGKDIDGTKMSDNNVGYKNYGYGEDGKHHETNLEAKYVVQSGPAKDLSFRIRQAWHRANADQGEGDQNEFRLIVDYPLSILHHHHHH
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Membrane protein
molecule keywords Porin D
publication title Structural insight into OprD substrate specificity.
pubmed doi rcsb
source organism Pseudomonas aeruginosa
total genus 93
structure length 382
sequence length 426
chains with identical sequence B
ec nomenclature ec 3.4.21.-:
pdb deposition date 2006-12-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03573 OprD outer membrane porin, OprD family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.10 Mainly Beta Beta Barrel Porin Porin 2odjA01
1BT9A 4FMSA 4GCPA 2Y0KA 6PRNA 2XE3A 5DL6A 2ZFGA 1GFNA 2XE2A 4FOZA 4FSPA 3HW9A 4LSEA 1GFPA 3SZDA 3EMNX 4D5UA 4GCSA 1PRNA 3K19A 5PRNA 1GFOA 3WI4A 3POUA 2ODJA 4LSFA 4LSHA 3SYSA 5DL7A 2QTKA 1HXUA 5JDPA 3O0EA 2OMFA 4KR8A 1E54A 3POXA 2O4VA 4FRTA 3UPGA 3A2SX 4AUIA 4FT6A 2J1NA 3SY7A 3SY9A 3PORA 1H6S1 3WI5A 4KR4A 4FRXA 3T24A 2XE1A 4GCQA 3NSGA 5DL5A 4D64A 4RJXA 3VZTX 1GFQA 5FVNA 1PHOA 2PORA 3T0SA 1BH3A 4BUMX 2FGQX 3UU2A 2K4TA 2Y2XA 4JFBA 3VZWX 1GFMA 2XG6A 5DL8A 4FSOA 3VY8X 8PRNA 4KRAA 4LSIA 3VZUX 1MPFA 1HXXA 4RJWA 3SZVA 3VY9X 2Y0LA 4C69X 2XE5A 7PRNA 3PRNA 2FGRA 2ZLDA 1HXTA 3SYBA 2J4UP 4D65A 2PRNA 1OPFA 1OSMA 3HWBA 3T20A 2Y0HA 3POQA 3FYXA 3JTYA
chains in the Genus database with same CATH superfamily
5KAFO 4AYID 1BT9A 1MM5A 4FMSA 2Y0KA 4GCPA 4U9CA 3AAEB 3PQUA 3PF1A 6PRNA 3AA6B 3BRYA 3G7GA 2XE3A 3DA3A 3VE2A 5DL6A 4K3BA 1ZHXA 4O3WA 3RBHA 2Y7SA 1GFNA 2R89A 2AXTO 2XE2A 2ZFGA 4FOZA 1P4TA 4FSPA 2F1TA 4O4UA 4C4VA 3HW9A 4O3ZA 2R88A 4LSEA 1GFPA 3JCUO 3SZDA 5T5FA 3PGRA 4AYNA 5EE2A 1G90A 3AAAB 2XTRA 2WJRA 3EMNX 4D5UA 4GF4A 4AKRA 3DA4A 4N74A 5G3AA 4GCSA 3DZMA 1PRNA 1Q9GA 3K19A 5PRNA 3V8UA 4FZMA 2R8AA 5GTIO 1GFOA 5E79O 2R4NA 3WI4A 3PQSA 4AYEC 4E1SA 3PGUA 1ZHZA 3GP6A 2ODJA 1S5LO 3POUA 4RLBA 5GV0A 4LSFA 4E1TA 4LSHA 3AA7A 4AYMC 5KAIO 3SYSA 3JTYA 3LK2A 5DL7A 2QTKA 2WJQA 3QRCA 3KVDD 4N58A 4RL9A 1HXUA 5JDPA 2W81C 3O0EA 1IZNB 2OMFA 5AFUK 1YS5A 2LFUA 2N2LA 3AA1B 4KR8A 5H2FO 3LK3B 1E54A 3POXA 2F1CX 2XMXA 2O4VA 4FRTA 2XTQA 3AAEA 4XNKA 3A2SX 4AUIA 5ADXK 3AA6A 1BXWA 4FT6A 4XNLA 2IWVA 2KZ7B 5G38A 2J1NA 4FQEA 3SY7A 4AFKA 3UPGA 2YPVA 3NJTA 3AA0B 3LK42 4PJ0O 3SY9A 3DWNA 3PORA 1T1LA 4O3XB 5B66O 1H6S1 4FUVA 3AAAA 3WI5A 4KR4A 4FRXA 3T24A 4AZLA 2XE1A 1QJ9A 1QJ8A 4RLCA 5AFUL 4GCQA 4FZLA 3TZGA 2M06A 2K0LA 3NSGA 3WU2O 5DL5A 3BS0A 5TISO 2KDYA 5ADXL 2W80C 4FESA 2JQYA 3VE1A 4D64A 4RJXA 4O3YA 4AYDC 3VZTX 1ZHYA 4Z3TA 3HOLA 4PUXA 1GFQA 2KC0A 2KXPB 3C5OA 2WVPA 4O49A 5IYUA 2IWWA 3QRAA 1ZHWA 2R4LA 2YNKA 5FVNA 1Q9FA 2LHFA 1PHOA 4G75A 2PORA 3T0SA 1BH3A 5G26A 1IZNA 4UB8O 3AA1A 3LK3A 4B61A 1MM4A 4BUMX 2FGQX 3UU2A 2K4TA 2F1VA 2X27X 2Y2XA 4GHBA 2MHLA 4JFBA 3VZWX 5B5EO 1GFMA 2KZ7A 4AKMA 2GE4A 4N59A 4C4VB 1THQA 4IL6O 4F4BA 2XG6A 1T16A 3AA0A 3UAQA 5DL8A 3HOEA 4FSOA 2M07A 3KZIO 3PGSA 4KRAA 3VY8X 8PRNA 4LSIA 5G39A 3VZUX 1MPFA 4AKRB 3DWOX 4O4XA 1HXXA 3LK41 4RJWA 4G76A 4PR7A 3SZVA 3VY9X 2Y0LA 4C69X 2XE5A 7PRNA 3PRNA 2FGRA 2ZLDA 3BRZA 4N75A 5D5DA 4UB6O 4C00A 1ZHTA 4K3CA 1HXTA 3A0HO 2ERVA 2N2MA 3A0BO 4JCHA 3SYBA 4CTDA 2J4UP 1QJPA 2R4OA 4FZNA 4D65A 3AA7B 2PRNA 1OPFA 3LK2B 2R4PA 4QQ1A 2JMMA 1OSMA 1ORMA 3HWBA 2KXPA 5GTHO 3T20A 2Y0HA 2X9KA 3POQA 3FYXA 2MNHA
chains in the Genus database with same CATH topology
4AYID 1BT9A 1MM5A 4FMSA 2Y0KA 4GCPA 4U9CA 3AAEB 3PQUA 6PRNA 3AA6B 3G7GA 2XE3A 3DA3A 3VE2A 5DL6A 1ZHXA 4O3WA 3RBHA 2Y7SA 1GFNA 2XE2A 2ZFGA 4FOZA 1P4TA 4FSPA 2F1TA 4O4UA 3HW9A 4O3ZA 4LSEA 1GFPA 3SZDA 4AYNA 5T5FA 5EE2A 1G90A 3AAAB 2XTRA 3EMNX 4D5UA 4GF4A 4AKRA 3DA4A 4GCSA 1PRNA 1Q9GA 3K19A 5PRNA 3V8UA 4FZMA 1GFOA 3WI4A 3PQSA 4AYEC 4E1SA 1ZHZA 3GP6A 2ODJA 3POUA 4RLBA 5GV0A 4LSFA 4E1TA 4LSHA 3AA7A 4AYMC 3SYSA 3JTYA 3LK2A 5DL7A 2QTKA 3QRCA 3KVDD 4N58A 4RL9A 1HXUA 5JDPA 2W81C 3O0EA 1IZNB 2OMFA 5AFUK 1YS5A 2LFUA 2N2LA 3AA1B 4KR8A 3LK3B 1E54A 3POXA 4XNKA 2XMXA 2O4VA 4FRTA 2XTQA 3AAEA 5ADXK 3A2SX 4AUIA 3UPGA 3AA6A 1BXWA 4FT6A 4XNLA 2KZ7B 2J1NA 3SY7A 4AFKA 2YPVA 3SY9A 3AA0B 3LK42 3PORA 4O3XB 1H6S1 4FUVA 3AAAA 3WI5A 4KR4A 4FRXA 3T24A 4AZLA 2XE1A 1QJ9A 1QJ8A 4RLCA 5AFUL 4GCQA 4FZLA 3TZGA 2M06A 2K0LA 3NSGA 5DL5A 5ADXL 2KDYA 2W80C 4FESA 3VE1A 4D64A 4RJXA 4O3YA 4AYDC 3VZTX 1ZHYA 4Z3TA 3HOLA 4PUXA 1GFQA 2KC0A 2KXPB 3C5OA 4O49A 5IYUA 3QRAA 1ZHWA 2YNKA 5FVNA 1Q9FA 2LHFA 1PHOA 4G75A 2PORA 3T0SA 1BH3A 5G26A 1IZNA 3AA1A 3LK3A 4B61A 1MM4A 4BUMX 2FGQX 3UU2A 2K4TA 2F1VA 2X27X 2Y2XA 4GHBA 2MHLA 4JFBA 3VZWX 1GFMA 2KZ7A 4AKMA 2GE4A 4N59A 1THQA 4F4BA 2XG6A 3UAQA 3AA0A 5DL8A 3HOEA 4FSOA 2M07A 3VY8X 8PRNA 4KRAA 4LSIA 3VZUX 1MPFA 4AKRB 4O4XA 1HXXA 3LK41 4RJWA 4G76A 3SZVA 3VY9X 2Y0LA 4C69X 2XE5A 7PRNA 3PRNA 2FGRA 2ZLDA 5D5DA 1ZHTA 1HXTA 3SYBA 2ERVA 2N2MA 4JCHA 2J4UP 1QJPA 4FZNA 4D65A 3AA7B 2PRNA 1OPFA 3LK2B 4QQ1A 2JMMA 1OSMA 1ORMA 3HWBA 2KXPA 3T20A 2Y0HA 3POQA 3FYXA 2MNHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1BT9 A;  4FMS A;  4GCP A;  2Y0K A;  6PRN A;  2XE3 A;  5DL6 A;  2ZFG A;  1GFN A;  2XE2 A;  4FOZ A;  4FSP A;  3HW9 A;  4LSE A;  1GFP A;  3SZD A;  3EMN X;  4D5U A;  4GCS A;  1PRN A;  3K19 A;  5PRN A;  1GFO A;  3WI4 A;  3POU A;  2ODJ A;  4LSF A;  4LSH A;  3SYS A;  5DL7 A;  2QTK A;  1HXU A;  5JDP A;  3O0E A;  2OMF A;  4KR8 A;  1E54 A;  3POX A;  2O4V A;  4FRT A;  3UPG A;  3A2S X;  4AUI A;  4FT6 A;  2J1N A;  3SY7 A;  3SY9 A;  3POR A;  1H6S 1;  3WI5 A;  4KR4 A;  4FRX A;  3T24 A;  2XE1 A;  4GCQ A;  3NSG A;  5DL5 A;  4D64 A;  4RJX A;  3VZT X;  1GFQ A;  5FVN A;  1PHO A;  2POR A;  3T0S A;  1BH3 A;  4BUM X;  2FGQ X;  3UU2 A;  2K4T A;  2Y2X A;  4JFB A;  3VZW X;  1GFM A;  2XG6 A;  5DL8 A;  4FSO A;  3VY8 X;  8PRN A;  4KRA A;  4LSI A;  3VZU X;  1MPF A;  1HXX A;  4RJW A;  3SZV A;  3VY9 X;  2Y0L A;  4C69 X;  2XE5 A;  7PRN A;  3PRN A;  2FGR A;  2ZLD A;  1HXT A;  3SYB A;  2J4U P;  4D65 A;  2PRN A;  1OPF A;  1OSM A;  3HWB A;  3T20 A;  2Y0H A;  3POQ A;  3FYX A;  3JTY A; 
#chains in the Genus database with same CATH topology
 5KAF O;  4AYI D;  1BT9 A;  1MM5 A;  4FMS A;  2Y0K A;  4GCP A;  4U9C A;  3AAE B;  3PQU A;  3PF1 A;  6PRN A;  3AA6 B;  3BRY A;  3G7G A;  2XE3 A;  3DA3 A;  3VE2 A;  5DL6 A;  4K3B A;  1ZHX A;  4O3W A;  3RBH A;  2Y7S A;  1GFN A;  2R89 A;  2AXT O;  2XE2 A;  2ZFG A;  4FOZ A;  1P4T A;  4FSP A;  2F1T A;  4O4U A;  4C4V A;  3HW9 A;  4O3Z A;  2R88 A;  4LSE A;  1GFP A;  3JCU O;  3SZD A;  5T5F A;  3PGR A;  4AYN A;  5EE2 A;  1G90 A;  3AAA B;  2XTR A;  2WJR A;  3EMN X;  4D5U A;  4GF4 A;  4AKR A;  3DA4 A;  4N74 A;  5G3A A;  4GCS A;  3DZM A;  1PRN A;  1Q9G A;  3K19 A;  5PRN A;  3V8U A;  4FZM A;  2R8A A;  5GTI O;  1GFO A;  5E79 O;  2R4N A;  3WI4 A;  3PQS A;  4AYE C;  4E1S A;  3PGU A;  1ZHZ A;  3GP6 A;  2ODJ A;  1S5L O;  3POU A;  4RLB A;  5GV0 A;  4LSF A;  4E1T A;  4LSH A;  3AA7 A;  4AYM C;  5KAI O;  3SYS A;  3JTY A;  3LK2 A;  5DL7 A;  2QTK A;  2WJQ A;  3QRC A;  3KVD D;  4N58 A;  4RL9 A;  1HXU A;  5JDP A;  2W81 C;  3O0E A;  1IZN B;  2OMF A;  5AFU K;  1YS5 A;  2LFU A;  2N2L A;  3AA1 B;  4KR8 A;  5H2F O;  3LK3 B;  1E54 A;  3POX A;  2F1C X;  2XMX A;  2O4V A;  4FRT A;  2XTQ A;  3AAE A;  4XNK A;  3A2S X;  4AUI A;  5ADX K;  3AA6 A;  1BXW A;  4FT6 A;  4XNL A;  2IWV A;  2KZ7 B;  5G38 A;  2J1N A;  4FQE A;  3SY7 A;  4AFK A;  3UPG A;  2YPV A;  3NJT A;  3AA0 B;  3LK4 2;  4PJ0 O;  3SY9 A;  3DWN A;  3POR A;  1T1L A;  4O3X B;  5B66 O;  1H6S 1;  4FUV A;  3AAA A;  3WI5 A;  4KR4 A;  4FRX A;  3T24 A;  4AZL A;  2XE1 A;  1QJ9 A;  1QJ8 A;  4RLC A;  5AFU L;  4GCQ A;  4FZL A;  3TZG A;  2M06 A;  2K0L A;  3NSG A;  3WU2 O;  5DL5 A;  3BS0 A;  5TIS O;  2KDY A;  5ADX L;  2W80 C;  4FES A;  2JQY A;  3VE1 A;  4D64 A;  4RJX A;  4O3Y A;  4AYD C;  3VZT X;  1ZHY A;  4Z3T A;  3HOL A;  4PUX A;  1GFQ A;  2KC0 A;  2KXP B;  3C5O A;  2WVP A;  4O49 A;  5IYU A;  2IWW A;  3QRA A;  1ZHW A;  2R4L A;  2YNK A;  5FVN A;  1Q9F A;  2LHF A;  1PHO A;  4G75 A;  2POR A;  3T0S A;  1BH3 A;  5G26 A;  1IZN A;  4UB8 O;  3AA1 A;  3LK3 A;  4B61 A;  1MM4 A;  4BUM X;  2FGQ X;  3UU2 A;  2K4T A;  2F1V A;  2X27 X;  2Y2X A;  4GHB A;  2MHL A;  4JFB A;  3VZW X;  5B5E O;  1GFM A;  2KZ7 A;  4AKM A;  2GE4 A;  4N59 A;  4C4V B;  1THQ A;  4IL6 O;  4F4B A;  2XG6 A;  1T16 A;  3AA0 A;  3UAQ A;  5DL8 A;  3HOE A;  4FSO A;  2M07 A;  3KZI O;  3PGS A;  4KRA A;  3VY8 X;  8PRN A;  4LSI A;  5G39 A;  3VZU X;  1MPF A;  4AKR B;  3DWO X;  4O4X A;  1HXX A;  3LK4 1;  4RJW A;  4G76 A;  4PR7 A;  3SZV A;  3VY9 X;  2Y0L A;  4C69 X;  2XE5 A;  7PRN A;  3PRN A;  2FGR A;  2ZLD A;  3BRZ A;  4N75 A;  5D5D A;  4UB6 O;  4C00 A;  1ZHT A;  4K3C A;  1HXT A;  3A0H O;  2ERV A;  2N2M A;  3A0B O;  4JCH A;  3SYB A;  4CTD A;  2J4U P;  1QJP A;  2R4O A;  4FZN A;  4D65 A;  3AA7 B;  2PRN A;  1OPF A;  3LK2 B;  2R4P A;  4QQ1 A;  2JMM A;  1OSM A;  1ORM A;  3HWB A;  2KXP A;  5GTH O;  3T20 A;  2Y0H A;  2X9K A;  3POQ A;  3FYX A;  2MNH A; 
#chains in the Genus database with same CATH homology
 4AYI D;  1BT9 A;  1MM5 A;  4FMS A;  2Y0K A;  4GCP A;  4U9C A;  3AAE B;  3PQU A;  6PRN A;  3AA6 B;  3G7G A;  2XE3 A;  3DA3 A;  3VE2 A;  5DL6 A;  1ZHX A;  4O3W A;  3RBH A;  2Y7S A;  1GFN A;  2XE2 A;  2ZFG A;  4FOZ A;  1P4T A;  4FSP A;  2F1T A;  4O4U A;  3HW9 A;  4O3Z A;  4LSE A;  1GFP A;  3SZD A;  4AYN A;  5T5F A;  5EE2 A;  1G90 A;  3AAA B;  2XTR A;  3EMN X;  4D5U A;  4GF4 A;  4AKR A;  3DA4 A;  4GCS A;  1PRN A;  1Q9G A;  3K19 A;  5PRN A;  3V8U A;  4FZM A;  1GFO A;  3WI4 A;  3PQS A;  4AYE C;  4E1S A;  1ZHZ A;  3GP6 A;  2ODJ A;  3POU A;  4RLB A;  5GV0 A;  4LSF A;  4E1T A;  4LSH A;  3AA7 A;  4AYM C;  3SYS A;  3JTY A;  3LK2 A;  5DL7 A;  2QTK A;  3QRC A;  3KVD D;  4N58 A;  4RL9 A;  1HXU A;  5JDP A;  2W81 C;  3O0E A;  1IZN B;  2OMF A;  5AFU K;  1YS5 A;  2LFU A;  2N2L A;  3AA1 B;  4KR8 A;  3LK3 B;  1E54 A;  3POX A;  4XNK A;  2XMX A;  2O4V A;  4FRT A;  2XTQ A;  3AAE A;  5ADX K;  3A2S X;  4AUI A;  3UPG A;  3AA6 A;  1BXW A;  4FT6 A;  4XNL A;  2KZ7 B;  2J1N A;  3SY7 A;  4AFK A;  2YPV A;  3SY9 A;  3AA0 B;  3LK4 2;  3POR A;  4O3X B;  1H6S 1;  4FUV A;  3AAA A;  3WI5 A;  4KR4 A;  4FRX A;  3T24 A;  4AZL A;  2XE1 A;  1QJ9 A;  1QJ8 A;  4RLC A;  5AFU L;  4GCQ A;  4FZL A;  3TZG A;  2M06 A;  2K0L A;  3NSG A;  5DL5 A;  5ADX L;  2KDY A;  2W80 C;  4FES A;  3VE1 A;  4D64 A;  4RJX A;  4O3Y A;  4AYD C;  3VZT X;  1ZHY A;  4Z3T A;  3HOL A;  4PUX A;  1GFQ A;  2KC0 A;  2KXP B;  3C5O A;  4O49 A;  5IYU A;  3QRA A;  1ZHW A;  2YNK A;  5FVN A;  1Q9F A;  2LHF A;  1PHO A;  4G75 A;  2POR A;  3T0S A;  1BH3 A;  5G26 A;  1IZN A;  3AA1 A;  3LK3 A;  4B61 A;  1MM4 A;  4BUM X;  2FGQ X;  3UU2 A;  2K4T A;  2F1V A;  2X27 X;  2Y2X A;  4GHB A;  2MHL A;  4JFB A;  3VZW X;  1GFM A;  2KZ7 A;  4AKM A;  2GE4 A;  4N59 A;  1THQ A;  4F4B A;  2XG6 A;  3UAQ A;  3AA0 A;  5DL8 A;  3HOE A;  4FSO A;  2M07 A;  3VY8 X;  8PRN A;  4KRA A;  4LSI A;  3VZU X;  1MPF A;  4AKR B;  4O4X A;  1HXX A;  3LK4 1;  4RJW A;  4G76 A;  3SZV A;  3VY9 X;  2Y0L A;  4C69 X;  2XE5 A;  7PRN A;  3PRN A;  2FGR A;  2ZLD A;  5D5D A;  1ZHT A;  1HXT A;  3SYB A;  2ERV A;  2N2M A;  4JCH A;  2J4U P;  1QJP A;  4FZN A;  4D65 A;  3AA7 B;  2PRN A;  1OPF A;  3LK2 B;  4QQ1 A;  2JMM A;  1OSM A;  1ORM A;  3HWB A;  2KXP A;  3T20 A;  2Y0H A;  3POQ A;  3FYX A;  2MNH A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...