2OG6A

Crystal structure of asparagine oxygenase in complex with fe(ii)
Total Genus 101
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
101
sequence length
323
structure length
323
Chain Sequence
SRYDVTLDQSDAELVEEIAWKLATQATGRPDDAEWVEAARNAWHAWPATLRRDLAGFRRDSGPDGAIVLRGLPVDSMGLPPTPRVNGSVQREASLGAAVLLMTACGLGDPGAFLPEKNGALVQDVVPVPGMEEFQGNAGSTLLTFHNENAFHEHRPDFVMLLCLRADPTGRAGLRTACVRRVLPLLSDSTVDALWAPEFRTAPPPSFQLSGPEEAPAPVLLGDRSDPDLRVDLAATEPVTERAAEALRELQAHFDATAVTHRLLPGELAIVDNRVTVHGRTEFTPRYDGTDRWLQRTFVLTDLRRSRAMRPADGYVLGAAPQP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase, electron transport
molecule keywords asparagine oxygenase
publication title Mechanistic and structural basis of stereospecific Cbeta-hydroxylation in calcium-dependent antibiotic, a daptomycin-type lipopeptide
pubmed doi rcsb
source organism Streptomyces coelicolor a3(2)
total genus 101
structure length 323
sequence length 323
ec nomenclature ec 1.14.11.39: L-asparagine oxygenase.
pdb deposition date 2007-01-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02668 TauD Taurine catabolism dioxygenase TauD, TfdA family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.130.10 Alpha Beta 4-Layer Sandwich Double-stranded beta-helix Clavaminate synthase-like 2og6A00
2R6SA 1DRTA 1OIJA 1GVGA 1OS7A 1GQWA 1GY9A 4M25A 4M2EA 4M27A 2WBQA 1VZ4A 3MS5A 4M23A 4NE0A 4FFAA 1JR7A 4M26A 4BHIA 4C8RA 1OIKA 1OIIA 4C5WA 2OG6A 4M2GA 4CWDA 4BGKA 3N6WA 3O2GA 4BHGA 4YLMX 1DS0A 1VZ5A 1Y0ZA 2OG5A 4M2FA 5J92A 3V15A 1DS1A 3V17A 1NX8A 4BHFA 1OIJC 1OTJA 2OG7A 3R1JA 4BGMA 5HSXA 2Q4AA 4M2CA 4J5IA 4BG1A 2WBPA 3EATX 4CVYA 4OJ8A 3PVJA 4M2IA 1OIJB 1NX4A 5KEUA 1OIHA 2WBOA 4Y0EA 1DRYA 3SWTA
chains in the Genus database with same CATH superfamily
2R6SA 1DRTA 1OIJA 1GVGA 1OS7A 1GQWA 1GY9A 4M25A 4M2EA 4M27A 2WBQA 1VZ4A 3MS5A 4M23A 4NE0A 4FFAA 1JR7A 4M26A 4BHIA 4C8RA 1OIKA 1OIIA 4C5WA 2OG6A 4M2GA 4CWDA 4BGKA 3N6WA 3O2GA 4BHGA 4YLMX 1DS0A 1VZ5A 1Y0ZA 2OG5A 4M2FA 5J92A 3V15A 1DS1A 1YOXA 1NX8A 3V17A 4BHFA 1OIJC 1OTJA 2OG7A 3R1JA 4BGMA 5HSXA 2Q4AA 4M2CA 4J5IA 4BG1A 2WBPA 3EATX 4CVYA 4OJ8A 3PVJA 4M2IA 1OIJB 1NX4A 1PG6A 5KEUA 1OIHA 2WBOA 4Y0EA 1DRYA 3SWTA
chains in the Genus database with same CATH topology
3SWTA 1VZ4A 4M23A 4FFAA 1OIIA 1OIKA 2Y0IA 2OG6A 4Z1VA 1VZ5A 2OG5A 4B7EA 5J92A 1DS1A 1NX8A 1H2LA 1OIJC 4M2CA 4BIOA 3EATX 1H2KA 1MZFA 4M2IA 1DRYA 3KCXA 2WA4A 2R6SA 1OS7A 4M27A 4M25A 1GY9A 2ILMA 4C5WA 4CWDA 4BGKA 3N6WA 1YCIA 3O2GA 3KCYA 4YLMX 1DS0A 4BHFA 4JAAA 1OTJA 2OG7A 4J5IA 2WBPA 4CVYA 2YDEA 3PVJA 3P3PA 1OIHA 2CGOA 4Y0EA 5JWPA 1DRTA 3P3NA 4NE0A 1H2NA 4C8RA 1MZEA 2XUMA 4M2GA 3OD4A 4BHGA 3V15A 1Y0ZA 4M2FA 3V17A 1H2MA 1IZ3A 2W0XA 4BGMA 3R1JA 5HSXA 2Q4AA 4BG1A 4OJ8A 3D8CA 1OIJB 5KEUA 1OIJA 1GVGA 1GQWA 4M2EA 2WBQA 3MS5A 4M26A 1JR7A 4BHIA 4NR1A 4Z2WA 2CGNA 4AI8A 4B7KA 2WA3A 1NX4A 2YC0A 2WBOA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2R6S A;  1DRT A;  1OIJ A;  1GVG A;  1OS7 A;  1GQW A;  1GY9 A;  4M25 A;  4M2E A;  4M27 A;  2WBQ A;  1VZ4 A;  3MS5 A;  4M23 A;  4NE0 A;  4FFA A;  1JR7 A;  4M26 A;  4BHI A;  4C8R A;  1OIK A;  1OII A;  4C5W A;  2OG6 A;  4M2G A;  4CWD A;  4BGK A;  3N6W A;  3O2G A;  4BHG A;  4YLM X;  1DS0 A;  1VZ5 A;  1Y0Z A;  2OG5 A;  4M2F A;  5J92 A;  3V15 A;  1DS1 A;  3V17 A;  1NX8 A;  4BHF A;  1OIJ C;  1OTJ A;  2OG7 A;  3R1J A;  4BGM A;  5HSX A;  2Q4A A;  4M2C A;  4J5I A;  4BG1 A;  2WBP A;  3EAT X;  4CVY A;  4OJ8 A;  3PVJ A;  4M2I A;  1OIJ B;  1NX4 A;  5KEU A;  1OIH A;  2WBO A;  4Y0E A;  1DRY A;  3SWT A; 
#chains in the Genus database with same CATH topology
 2R6S A;  1DRT A;  1OIJ A;  1GVG A;  1OS7 A;  1GQW A;  1GY9 A;  4M25 A;  4M2E A;  4M27 A;  2WBQ A;  1VZ4 A;  3MS5 A;  4M23 A;  4NE0 A;  4FFA A;  1JR7 A;  4M26 A;  4BHI A;  4C8R A;  1OIK A;  1OII A;  4C5W A;  2OG6 A;  4M2G A;  4CWD A;  4BGK A;  3N6W A;  3O2G A;  4BHG A;  4YLM X;  1DS0 A;  1VZ5 A;  1Y0Z A;  2OG5 A;  4M2F A;  5J92 A;  3V15 A;  1DS1 A;  1YOX A;  1NX8 A;  3V17 A;  4BHF A;  1OIJ C;  1OTJ A;  2OG7 A;  3R1J A;  4BGM A;  5HSX A;  2Q4A A;  4M2C A;  4J5I A;  4BG1 A;  2WBP A;  3EAT X;  4CVY A;  4OJ8 A;  3PVJ A;  4M2I A;  1OIJ B;  1NX4 A;  1PG6 A;  5KEU A;  1OIH A;  2WBO A;  4Y0E A;  1DRY A;  3SWT A; 
#chains in the Genus database with same CATH homology
 3SWT A;  1VZ4 A;  4M23 A;  4FFA A;  1OII A;  1OIK A;  2Y0I A;  2OG6 A;  4Z1V A;  1VZ5 A;  2OG5 A;  4B7E A;  5J92 A;  1DS1 A;  1NX8 A;  1H2L A;  1OIJ C;  4M2C A;  4BIO A;  3EAT X;  1H2K A;  1MZF A;  4M2I A;  1DRY A;  3KCX A;  2WA4 A;  2R6S A;  1OS7 A;  4M27 A;  4M25 A;  1GY9 A;  2ILM A;  4C5W A;  4CWD A;  4BGK A;  3N6W A;  1YCI A;  3O2G A;  3KCY A;  4YLM X;  1DS0 A;  4BHF A;  4JAA A;  1OTJ A;  2OG7 A;  4J5I A;  2WBP A;  4CVY A;  2YDE A;  3PVJ A;  3P3P A;  1OIH A;  2CGO A;  4Y0E A;  5JWP A;  1DRT A;  3P3N A;  4NE0 A;  1H2N A;  4C8R A;  1MZE A;  2XUM A;  4M2G A;  3OD4 A;  4BHG A;  3V15 A;  1Y0Z A;  4M2F A;  3V17 A;  1H2M A;  1IZ3 A;  2W0X A;  4BGM A;  3R1J A;  5HSX A;  2Q4A A;  4BG1 A;  4OJ8 A;  3D8C A;  1OIJ B;  5KEU A;  1OIJ A;  1GVG A;  1GQW A;  4M2E A;  2WBQ A;  3MS5 A;  4M26 A;  1JR7 A;  4BHI A;  4NR1 A;  4Z2W A;  2CGN A;  4AI8 A;  4B7K A;  2WA3 A;  1NX4 A;  2YC0 A;  2WBO A; 
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