2OGGA

Structure of b. subtilis trehalose repressor (trer) effector binding domain
Total Genus 35
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
35
sequence length
144
structure length
144
Chain Sequence
TKTTVHKFGLEPPSELIQKQLRANLDDDIWEVIRSRKIDGEHVILDKDYFFRKHVPHLTKEICENSIYEYIEGELGLSISYAQKEIVAEPCTDEDRELLDLRGYDHMVVVRNYVFLEDTSLFQYTESRHRLDKFRFVDFARRGK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transcription
molecule keywords Trehalose operon transcriptional repressor
publication title The crystal structure of the effector-binding domain of the trehalose repressor TreR from Bacillus subtilis 168 reveals a unique quarternary assembly.
pubmed doi rcsb
source organism Bacillus subtilis
total genus 35
structure length 144
sequence length 144
ec nomenclature
pdb deposition date 2007-01-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF07702 UTRA UTRA domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1410.10 Alpha Beta 3-Layer(aba) Sandwich Chorismate lyase Chorismate lyase-like 2oggA01
1G1BA 2P19A 4ZSKA 1G81A 1FW9A 3HFIA 4U0VA 2PKHA 3F8MA 4ZSIA 3L5ZA 2IKKA 2FA1A 2RA5A 1XLRA 3EETA 3CNVA 4ZSBA 1TT8A 1JD3A 3BWGA 4U0WA 3LHEA 4WWCA 2NWIA 2WV0A 2AHCA 3DDVA 2OOIA 3EDPA 2OGGA 3F8LA
chains in the Genus database with same CATH superfamily
1G1BA 2P19A 4ZSKA 1G81A 1FW9A 3HFIA 4U0VA 2PKHA 3F8MA 4ZSIA 3L5ZA 2IKKA 2FA1A 2RA5A 1XLRA 3EETA 3CNVA 4ZSBA 1TT8A 1JD3A 3BWGA 4U0WA 3LHEA 4WWCA 2NWIA 2WV0A 2AHCA 3DDVA 2OOIA 3EDPA 2OGGA 3F8LA
chains in the Genus database with same CATH topology
1G1BA 2P19A 4ZSKA 1G81A 1FW9A 3HFIA 4U0VA 2PKHA 3F8MA 4ZSIA 3L5ZA 2IKKA 2FA1A 2RA5A 1XLRA 3EETA 3CNVA 4ZSBA 1TT8A 1JD3A 3BWGA 4U0WA 3LHEA 4WWCA 2NWIA 2WV0A 2AHCA 3DDVA 2OOIA 3EDPA 2OGGA 3F8LA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1G1B A;  2P19 A;  4ZSK A;  1G81 A;  1FW9 A;  3HFI A;  4U0V A;  2PKH A;  3F8M A;  4ZSI A;  3L5Z A;  2IKK A;  2FA1 A;  2RA5 A;  1XLR A;  3EET A;  3CNV A;  4ZSB A;  1TT8 A;  1JD3 A;  3BWG A;  4U0W A;  3LHE A;  4WWC A;  2NWI A;  2WV0 A;  2AHC A;  3DDV A;  2OOI A;  3EDP A;  2OGG A;  3F8L A; 
#chains in the Genus database with same CATH topology
 1G1B A;  2P19 A;  4ZSK A;  1G81 A;  1FW9 A;  3HFI A;  4U0V A;  2PKH A;  3F8M A;  4ZSI A;  3L5Z A;  2IKK A;  2FA1 A;  2RA5 A;  1XLR A;  3EET A;  3CNV A;  4ZSB A;  1TT8 A;  1JD3 A;  3BWG A;  4U0W A;  3LHE A;  4WWC A;  2NWI A;  2WV0 A;  2AHC A;  3DDV A;  2OOI A;  3EDP A;  2OGG A;  3F8L A; 
#chains in the Genus database with same CATH homology
 1G1B A;  2P19 A;  4ZSK A;  1G81 A;  1FW9 A;  3HFI A;  4U0V A;  2PKH A;  3F8M A;  4ZSI A;  3L5Z A;  2IKK A;  2FA1 A;  2RA5 A;  1XLR A;  3EET A;  3CNV A;  4ZSB A;  1TT8 A;  1JD3 A;  3BWG A;  4U0W A;  3LHE A;  4WWC A;  2NWI A;  2WV0 A;  2AHC A;  3DDV A;  2OOI A;  3EDP A;  2OGG A;  3F8L A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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