2OJYD

Crystal structure of indol-3-acetaldehyde derived ttq-amide adduct of aromatic amine dehydrogenase
Total Genus 28
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
28
Knots found
sequence length
110
structure length
109
Chain Sequence
EVNSCDYWRHCAVDGFLCSCCGGTTTTCPPGSTPSPISIGTCHNPHDGKDYLISYHDCCGKTACGRCQCNTQTRERPGYEFFLHNDVNWCMANENSTFHCTTSVLVGLA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title New insights into the reductive half-reaction mechanism of aromatic amine dehydrogenase revealed by reaction with carbinolamine substrates.
pubmed doi rcsb
molecule keywords Aromatic amine dehydrogenase, small subunit
molecule tags Oxidoreductase
total genus 28
structure length 109
sequence length 110
chains with identical sequence H
other databases KnotProt 2.0: K
ec nomenclature ec 1.4.9.2: Aralkylamine dehydrogenase (azurin).
pdb deposition date 2007-01-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF02975 Me-amine-dh_L Methylamine dehydrogenase, L chain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.30.10 Mainly Beta Sandwich Electron Transport Ethylamine Dehydrogenase Methylamine/Aralkylamine dehydrogenase light chain 2ojyD00
1MDAL 2OK6D 3SLEC 2HJBD 4FANC 2I0RD 4L1QC 2IUQD 2AH0D 2OIZD 2AGLD 2IUPD 2HJ4D 1MAEL 2Q7QD 2MADL 3RLMC 2AGXD 3C75L 2HXCD 2BBKL 2H47B 2IUVD 4K3IC 3RN0C 4FAVC 2AGZD 3SWSC 2MTAL 2OK4D 3L4OC 2J57K 2J55L 2H3XB 2GC4B 3ORVC 3RN1C 3RMZC 1MAFL 2HKRD 4FA4C 3PXSC 2GC7B 3SXTC 1MG2B 3SJLC 2J56L 2AGWD 2IURD 4L3GC 4L3HC 4FA5C 3SVWC 2AH1D 2I0TD 3PXTC 1MG3B 2HKMD 4O1QC 2OJYD 4FB1C 4FA9C 4FA1C 2AGYD 3PXWC 3L4MC 2I0SD 2IAAB 4Y5RC
chains in the Genus database with same CATH superfamily
1MDAL 2OK6D 3SLEC 2HJBD 4FANC 2I0RD 4L1QC 2IUQD 2AH0D 2OIZD 2AGLD 2IUPD 2HJ4D 1MAEL 2Q7QD 2MADL 3RLMC 2AGXD 3C75L 2HXCD 2BBKL 2H47B 2IUVD 4K3IC 3RN0C 4FAVC 2AGZD 3SWSC 2MTAL 2OK4D 3L4OC 2J57K 2J55L 2H3XB 2GC4B 3ORVC 3RN1C 3RMZC 1MAFL 2HKRD 4FA4C 3PXSC 2GC7B 3SXTC 1MG2B 3SJLC 2J56L 2AGWD 2IURD 4L3GC 4L3HC 4FA5C 3SVWC 2AH1D 2I0TD 3PXTC 1MG3B 2HKMD 4O1QC 2OJYD 4FB1C 4FA9C 4FA1C 2AGYD 3PXWC 3L4MC 2I0SD 2IAAB 4Y5RC
chains in the Genus database with same CATH topology
1MDAL 2OK6D 3SLEC 2HJBD 4FANC 2I0RD 4L1QC 2IUQD 2AH0D 2OIZD 2AGLD 2IUPD 2HJ4D 1MAEL 2Q7QD 2MADL 3RLMC 2AGXD 3C75L 2HXCD 2BBKL 2H47B 2IUVD 4K3IC 3RN0C 4FAVC 2AGZD 3SWSC 2MTAL 2OK4D 3L4OC 2J57K 2J55L 2H3XB 2GC4B 3ORVC 3RN1C 3RMZC 1MAFL 2HKRD 4FA4C 3PXSC 2GC7B 3SXTC 1MG2B 3SJLC 2J56L 2AGWD 2IURD 4L3GC 4L3HC 4FA5C 3SVWC 2AH1D 2I0TD 3PXTC 1MG3B 2HKMD 4O1QC 2OJYD 4FB1C 4FA9C 4FA1C 2AGYD 3PXWC 3L4MC 2I0SD 2IAAB 4Y5RC
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1MDA L;  2OK6 D;  3SLE C;  2HJB D;  4FAN C;  2I0R D;  4L1Q C;  2IUQ D;  2AH0 D;  2OIZ D;  2AGL D;  2IUP D;  2HJ4 D;  1MAE L;  2Q7Q D;  2MAD L;  3RLM C;  2AGX D;  3C75 L;  2HXC D;  2BBK L;  2H47 B;  2IUV D;  4K3I C;  3RN0 C;  4FAV C;  2AGZ D;  3SWS C;  2MTA L;  2OK4 D;  3L4O C;  2J57 K;  2J55 L;  2H3X B;  2GC4 B;  3ORV C;  3RN1 C;  3RMZ C;  1MAF L;  2HKR D;  4FA4 C;  3PXS C;  2GC7 B;  3SXT C;  1MG2 B;  3SJL C;  2J56 L;  2AGW D;  2IUR D;  4L3G C;  4L3H C;  4FA5 C;  3SVW C;  2AH1 D;  2I0T D;  3PXT C;  1MG3 B;  2HKM D;  4O1Q C;  2OJY D;  4FB1 C;  4FA9 C;  4FA1 C;  2AGY D;  3PXW C;  3L4M C;  2I0S D;  2IAA B;  4Y5R C; 
#chains in the Genus database with same CATH topology
 1MDA L;  2OK6 D;  3SLE C;  2HJB D;  4FAN C;  2I0R D;  4L1Q C;  2IUQ D;  2AH0 D;  2OIZ D;  2AGL D;  2IUP D;  2HJ4 D;  1MAE L;  2Q7Q D;  2MAD L;  3RLM C;  2AGX D;  3C75 L;  2HXC D;  2BBK L;  2H47 B;  2IUV D;  4K3I C;  3RN0 C;  4FAV C;  2AGZ D;  3SWS C;  2MTA L;  2OK4 D;  3L4O C;  2J57 K;  2J55 L;  2H3X B;  2GC4 B;  3ORV C;  3RN1 C;  3RMZ C;  1MAF L;  2HKR D;  4FA4 C;  3PXS C;  2GC7 B;  3SXT C;  1MG2 B;  3SJL C;  2J56 L;  2AGW D;  2IUR D;  4L3G C;  4L3H C;  4FA5 C;  3SVW C;  2AH1 D;  2I0T D;  3PXT C;  1MG3 B;  2HKM D;  4O1Q C;  2OJY D;  4FB1 C;  4FA9 C;  4FA1 C;  2AGY D;  3PXW C;  3L4M C;  2I0S D;  2IAA B;  4Y5R C; 
#chains in the Genus database with same CATH homology
 1MDA L;  2OK6 D;  3SLE C;  2HJB D;  4FAN C;  2I0R D;  4L1Q C;  2IUQ D;  2AH0 D;  2OIZ D;  2AGL D;  2IUP D;  2HJ4 D;  1MAE L;  2Q7Q D;  2MAD L;  3RLM C;  2AGX D;  3C75 L;  2HXC D;  2BBK L;  2H47 B;  2IUV D;  4K3I C;  3RN0 C;  4FAV C;  2AGZ D;  3SWS C;  2MTA L;  2OK4 D;  3L4O C;  2J57 K;  2J55 L;  2H3X B;  2GC4 B;  3ORV C;  3RN1 C;  3RMZ C;  1MAF L;  2HKR D;  4FA4 C;  3PXS C;  2GC7 B;  3SXT C;  1MG2 B;  3SJL C;  2J56 L;  2AGW D;  2IUR D;  4L3G C;  4L3H C;  4FA5 C;  3SVW C;  2AH1 D;  2I0T D;  3PXT C;  1MG3 B;  2HKM D;  4O1Q C;  2OJY D;  4FB1 C;  4FA9 C;  4FA1 C;  2AGY D;  3PXW C;  3L4M C;  2I0S D;  2IAA B;  4Y5R C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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