The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
234
|
sequence length |
789
|
structure length |
725
|
Chain Sequence |
NYVIWFENLRMTDVERVGGKNASLGEMISQLTEKGVRVPGGFATTAEAYRAFLAHNGLSERISAALAKLDVEDVAELARVGKEIRQWILDTPFPEQLDAEIEAAWNKMVADAGGADISVAVRSSATAFAGQQETFLNINGLDNVKEAMHHVFASLYNDRAISYRVHKGFDIVALSAGVQRMVRSDSGASGVMFTLDTESGYDQVVFVTSSYGLGENVVQGAVNPDEFYVFKPTLKAGKPAILRKTMGSKHIKMIFTDKAEAGKSVTNVDVPEEDRNRFSITDEEITELAHYALTIEKHYGRPMDIEWGRDGLDGKLYILQARPETLCEGRAQKVGQGKVRDVLVTDMTDPDWEPVMKRASAIVTNRGGRTCHAAIIAREPAVVGCGNATELLKNGQEVTVSCADTGFIYAGLMPKAPVKVMMNVGNPELAFSFANLPSEGIGLARMEFIINRQIGIHPKALLEFDKQDDELKAEITRRIAGYASPVDFYVDKIAEGVATLAASVYPRKTIVRMSDFKSNEYANLVGGNVYEPHEENPMLGFRGAARYVADNFKDCFALECKALKRVRDEMGLTNVEIMIPFVRTLGEAEAVVKALKENGLERGKNGLRLIMMCELPSNAVLAEQFLQYFDGFSIGSNDMTQLTLGLDRDSGLVSESFDERNPAVKVMLHLAISACRKQNKYVGICGQGPSDHPDFAKWLVEEGIESVSLNPDTVIETWLYLANEL
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
The crystal structure of the phosphoenolpyruvate synthase from Neisseria meningitidis
rcsb |
| molecule tags |
Transferase
|
| source organism |
Neisseria meningitidis
|
| molecule keywords |
Phosphoenolpyruvate synthase
|
| total genus |
234
|
| structure length |
725
|
| sequence length |
789
|
| ec nomenclature |
ec
2.7.9.2: Pyruvate, water dikinase. |
| pdb deposition date | 2007-01-19 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00391 | PEP-utilizers | PEP-utilising enzyme, mobile domain |
| A | PF01326 | PPDK_N | Pyruvate phosphate dikinase, PEP/pyruvate binding domain |
| A | PF02896 | PEP-utilizers_C | PEP-utilising enzyme, TIM barrel domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | Alpha-Beta Barrel | TIM Barrel | Phosphoenolpyruvate-binding domains | ||
| Alpha Beta | 2-Layer Sandwich | D-amino Acid Aminotransferase; Chain A, domain 1 | ATP-grasp fold, B domain | ||
| Alpha Beta | 2-Layer Sandwich | Dna Ligase; domain 1 | ATP-grasp fold, A domain | ||
| Alpha Beta | 3-Layer(bba) Sandwich | Glucose Oxidase; domain 1 | Phosphohistidine domain |
