2OOXE

Crystal structure of the adenylate sensor from amp-activated protein kinase complexed with amp
Total Genus 98
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
98
sequence length
333
structure length
333
Chain Sequence
MDVQETQKGALKEIQAFIRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIKYYYQSSSFPEAIAEIDKFRLLGLREVERKIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRILKFISMNCKETAMLRVPLNQMTIGTWSNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYESVDVMHLIQDGDYSNLDLSVGEALLKRPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLADILNYIIYDKTTTPGVPEQTDNFESAV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structures of the adenylate sensor from fission yeast AMP-activated protein kinase.
pubmed doi rcsb
molecule keywords SNF1-like protein kinase ssp2
molecule tags Transferase
source organism Schizosaccharomyces pombe
total genus 98
structure length 333
sequence length 333
chains with identical sequence G
ec nomenclature
pdb deposition date 2007-01-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
E PF00571 CBS CBS domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.580.10 Alpha Beta Roll CBS-domain CBS-domain 2ooxE02
3.10.580.10 Alpha Beta Roll CBS-domain CBS-domain 2ooxE01
4IY4A 3DDJA 4HG0A 4GQYA 2D4ZA 5MMZA 3KPDA 2PFIA 4P1OA 2YVZA 4ESYA 3OCMA 1O50A 4COOA 4PCUA 4P1GA 2QRCE 2OOXE 5IIPA 2QR1E 5K23C 3PC3A 4IYSA 1PVMA 2YZIA 3L31A 1PBJA 3FWRA 1YAVA 3T4NC 5K22B 4DQWA 3LFZA 3TDHC 3GBYA 4O9KA 2YZQA 2P9MA 3FWSA 3KPBA 3K6EA 5K25C 3ORGA 2QLVC 2YVYA 4GQVA 1XKFA 4IY0A 3FNAA 3LQNA 3TE5C 2O16A 2EMQA 2RC3A 3KH5A 5K24C 4L28A 4IY3A 4L27A 2OOYE 4ESYB 4FRYA 2UV4A 5KS7A 3SL7A 3OI8A 3FV6A 2NYEA 3PC4A 3K2VA 2ZY9A 3HF7A 4UUUA 3L2BA 4FXSA 4L3VA 2QREE 3PC2A 3I8NA 2YVXA 4L0DA 2NYCA 3LV9A 2UV7A 2EF7A 4GQWA 4NOCA 2UV5A 2RIFA 2OUXA 3OCOA 4IY2A 3LHHA 3FHMA 3KPCA 2UV6A 5LXQA 3KXRA 2QH1A 2QRDE 1Y5HA 2RIHA
chains in the Genus database with same CATH superfamily
4IY4A 3DDJA 4HG0A 4GQYA 2D4ZA 5MMZA 3KPDA 2PFIA 4P1OA 2YVZA 4ESYA 3OCMA 1O50A 4COOA 4PCUA 4P1GA 2QRCE 2OOXE 5IIPA 2QR1E 5K23C 3PC3A 2J9LA 4IYSA 1PVMA 2YZIA 3L31A 1PBJA 3FWRA 1YAVA 3T4NC 5K22B 4DQWA 3LFZA 3TDHC 3GBYA 4O9KA 2YZQA 2P9MA 3FWSA 3KPBA 3K6EA 5K25C 3ORGA 2QLVC 2YVYA 4GQVA 1XKFA 4IY0A 3FNAA 3LQNA 3TE5C 2O16A 2EMQA 2RC3A 3KH5A 5K24C 4L28A 4IY3A 4L27A 2OOYE 4ESYB 4FRYA 2UV4A 5KS7A 3SL7A 3OI8A 3FV6A 2NYEA 3PC4A 2JA3A 3K2VA 2ZY9A 3HF7A 4UUUA 3L2BA 4FXSA 4L3VA 2QREE 3PC2A 3I8NA 2YVXA 4L0DA 2NYCA 3LV9A 2UV7A 2EF7A 4GQWA 4NOCA 2UV5A 2RIFA 2OUXA 3OCOA 4IY2A 3LHHA 3FHMA 3KPCA 2UV6A 5LXQA 3KXRA 2QH1A 2QRDE 1Y5HA 2RIHA
chains in the Genus database with same CATH topology
4IY4A 3DDJA 4HG0A 4GQYA 2D4ZA 5MMZA 3KPDA 2PFIA 4P1OA 2YVZA 4ESYA 3OCMA 1O50A 4COOA 4PCUA 4P1GA 2QRCE 2OOXE 5IIPA 2QR1E 5K23C 3PC3A 2J9LA 4IYSA 1PVMA 2YZIA 3L31A 1PBJA 3FWRA 1YAVA 3T4NC 5K22B 4DQWA 3LFZA 3TDHC 3GBYA 4O9KA 2YZQA 2P9MA 3FWSA 3KPBA 3K6EA 5K25C 3ORGA 2QLVC 2YVYA 4GQVA 1XKFA 4IY0A 3FNAA 3LQNA 3TE5C 2O16A 2EMQA 2RC3A 3KH5A 5K24C 4L28A 4IY3A 4L27A 2OOYE 4ESYB 4FRYA 2UV4A 5KS7A 3SL7A 3OI8A 3FV6A 2NYEA 3PC4A 2JA3A 3K2VA 2ZY9A 3HF7A 4UUUA 3L2BA 4FXSA 4L3VA 2QREE 3PC2A 3I8NA 2YVXA 4L0DA 2NYCA 3LV9A 2UV7A 2EF7A 4GQWA 4NOCA 2UV5A 2RIFA 2OUXA 3OCOA 4IY2A 3LHHA 3FHMA 3KPCA 2UV6A 5LXQA 3KXRA 2QH1A 2QRDE 1Y5HA 2RIHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4IY4 A;  3DDJ A;  4HG0 A;  4GQY A;  2D4Z A;  5MMZ A;  3KPD A;  2PFI A;  4P1O A;  2YVZ A;  4ESY A;  3OCM A;  1O50 A;  4COO A;  4PCU A;  4P1G A;  2QRC E;  2OOX E;  5IIP A;  2QR1 E;  5K23 C;  3PC3 A;  4IYS A;  1PVM A;  2YZI A;  3L31 A;  1PBJ A;  3FWR A;  1YAV A;  3T4N C;  5K22 B;  4DQW A;  3LFZ A;  3TDH C;  3GBY A;  4O9K A;  2YZQ A;  2P9M A;  3FWS A;  3KPB A;  3K6E A;  5K25 C;  3ORG A;  2QLV C;  2YVY A;  4GQV A;  1XKF A;  4IY0 A;  3FNA A;  3LQN A;  3TE5 C;  2O16 A;  2EMQ A;  2RC3 A;  3KH5 A;  5K24 C;  4L28 A;  4IY3 A;  4L27 A;  2OOY E;  4ESY B;  4FRY A;  2UV4 A;  5KS7 A;  3SL7 A;  3OI8 A;  3FV6 A;  2NYE A;  3PC4 A;  3K2V A;  2ZY9 A;  3HF7 A;  4UUU A;  3L2B A;  4FXS A;  4L3V A;  2QRE E;  3PC2 A;  3I8N A;  2YVX A;  4L0D A;  2NYC A;  3LV9 A;  2UV7 A;  2EF7 A;  4GQW A;  4NOC A;  2UV5 A;  2RIF A;  2OUX A;  3OCO A;  4IY2 A;  3LHH A;  3FHM A;  3KPC A;  2UV6 A;  5LXQ A;  3KXR A;  2QH1 A;  2QRD E;  1Y5H A;  2RIH A; 
#chains in the Genus database with same CATH topology
 4IY4 A;  3DDJ A;  4HG0 A;  4GQY A;  2D4Z A;  5MMZ A;  3KPD A;  2PFI A;  4P1O A;  2YVZ A;  4ESY A;  3OCM A;  1O50 A;  4COO A;  4PCU A;  4P1G A;  2QRC E;  2OOX E;  5IIP A;  2QR1 E;  5K23 C;  3PC3 A;  2J9L A;  4IYS A;  1PVM A;  2YZI A;  3L31 A;  1PBJ A;  3FWR A;  1YAV A;  3T4N C;  5K22 B;  4DQW A;  3LFZ A;  3TDH C;  3GBY A;  4O9K A;  2YZQ A;  2P9M A;  3FWS A;  3KPB A;  3K6E A;  5K25 C;  3ORG A;  2QLV C;  2YVY A;  4GQV A;  1XKF A;  4IY0 A;  3FNA A;  3LQN A;  3TE5 C;  2O16 A;  2EMQ A;  2RC3 A;  3KH5 A;  5K24 C;  4L28 A;  4IY3 A;  4L27 A;  2OOY E;  4ESY B;  4FRY A;  2UV4 A;  5KS7 A;  3SL7 A;  3OI8 A;  3FV6 A;  2NYE A;  3PC4 A;  2JA3 A;  3K2V A;  2ZY9 A;  3HF7 A;  4UUU A;  3L2B A;  4FXS A;  4L3V A;  2QRE E;  3PC2 A;  3I8N A;  2YVX A;  4L0D A;  2NYC A;  3LV9 A;  2UV7 A;  2EF7 A;  4GQW A;  4NOC A;  2UV5 A;  2RIF A;  2OUX A;  3OCO A;  4IY2 A;  3LHH A;  3FHM A;  3KPC A;  2UV6 A;  5LXQ A;  3KXR A;  2QH1 A;  2QRD E;  1Y5H A;  2RIH A; 
#chains in the Genus database with same CATH homology
 4IY4 A;  3DDJ A;  4HG0 A;  4GQY A;  2D4Z A;  5MMZ A;  3KPD A;  2PFI A;  4P1O A;  2YVZ A;  4ESY A;  3OCM A;  1O50 A;  4COO A;  4PCU A;  4P1G A;  2QRC E;  2OOX E;  5IIP A;  2QR1 E;  5K23 C;  3PC3 A;  2J9L A;  4IYS A;  1PVM A;  2YZI A;  3L31 A;  1PBJ A;  3FWR A;  1YAV A;  3T4N C;  5K22 B;  4DQW A;  3LFZ A;  3TDH C;  3GBY A;  4O9K A;  2YZQ A;  2P9M A;  3FWS A;  3KPB A;  3K6E A;  5K25 C;  3ORG A;  2QLV C;  2YVY A;  4GQV A;  1XKF A;  4IY0 A;  3FNA A;  3LQN A;  3TE5 C;  2O16 A;  2EMQ A;  2RC3 A;  3KH5 A;  5K24 C;  4L28 A;  4IY3 A;  4L27 A;  2OOY E;  4ESY B;  4FRY A;  2UV4 A;  5KS7 A;  3SL7 A;  3OI8 A;  3FV6 A;  2NYE A;  3PC4 A;  2JA3 A;  3K2V A;  2ZY9 A;  3HF7 A;  4UUU A;  3L2B A;  4FXS A;  4L3V A;  2QRE E;  3PC2 A;  3I8N A;  2YVX A;  4L0D A;  2NYC A;  3LV9 A;  2UV7 A;  2EF7 A;  4GQW A;  4NOC A;  2UV5 A;  2RIF A;  2OUX A;  3OCO A;  4IY2 A;  3LHH A;  3FHM A;  3KPC A;  2UV6 A;  5LXQ A;  3KXR A;  2QH1 A;  2QRD E;  1Y5H A;  2RIH A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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