2OPDA

Structure of the neisseria meningitidis minor type iv pilin, pilx
Total Genus 37
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
37
sequence length
121
structure length
121
Chain Sequence
EFEKGYQSQLYTEMVGINNISKQFILKNPLDDNQTIKSKLERFVSGYKMNPKIAEKYNVSVHFVNKEKPRAYSLVGVPKTGTGYTLSVWMNSVGDGYKCRDAASARAHLETLSSDVGCEAF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title 3D structure/function analysis of PilX reveals how minor pilins can modulate the virulence properties of type IV pili.
pubmed doi rcsb
molecule tags Cell adhesion
source organism Neisseria meningitidis
molecule keywords PilX
total genus 37
structure length 121
sequence length 121
chains with identical sequence B
ec nomenclature
pdb deposition date 2007-01-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF11530 Pilin_PilX Minor type IV pilin, PilX
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.540.20 Alpha Beta 2-Layer Sandwich Fructose-1,6-Bisphosphatase; Chain A, domain 1 Fructose-1,6-Bisphosphatase; Chain A, domain 1 2opdA00
2OPDA 2OPEA
chains in the Genus database with same CATH superfamily
4AS4A 2FVZA 1FBCA 4GWSA 1NV1A 4N81A 4I40A 4GWWA 1FBEA 1NV0A 1K9YA 2OPEA 3A29A 4MJOA 4GX4A 4GBVA 5I3SA 4HXVA 4QXDA 1IMBA 1NV6A 3KC0A 4GX3A 5ET6A 1YZ0A 5IZ3B 3RPLA 4O7IA 1FTAA 1G0IA 2CZKA 1VDWA 1XI6A 2P3NA 1NV5A 5IZ1A 4GX6A 1FJ9A 1NUXA 3FBPA 4HE2A 1FRPA 3BIHA 1D9QA 1RDYA 5EQ8A 3IFCA 1INPA 2QVRA 4KXPA 5IZ3A 1FBHA 2FIEA 1NUYA 4H45A 2R8TA 1LBVA 5J16A 1FBGA 4FBPA 1YXIA 2WEFA 3T0JA 1DK4A 1EYJA 5ET5A 4GWYA 5EQ9A 1LBWA 2FIXA 5EQAA 2F3DA 4GBWA 1IMDA 2PCRA 5ET7A 1RDZA 2Q74A 4I3EA 2QFLA 4I3YA 1NUWA 2FBPA 1SPIA 1FBPA 1FPKA 2GQ1A 1LEVA 1JP4A 4GWZA 1EYIA 4HE1A 5LDZA 2WBDA 1RDXA 1FPEA 1NV3A 1NV7A 2OX3A 5EYGA 1LBZA 2OWZA 5EQ7A 3ROJA 4G61A 2Y5LA 5A5LA 1FBDA 5F24A 1KA1A 2Y5KA 1FPDA 3D1RA 1FPBA 2P3VA 3LV0A 1FSAA 1Q9DA 1IMFA 4IR8A 1FPFA 3LUZA 1KA0A 5DW8A 1IMCA 3QMFA 5ET8A 1LBYA 1LBXA 2OPDA 1KZ8A 2DDKA 1QGXA 5FBPA 4H46A 1NUZA 4PTKA 1NV4A 1FPLA 1G0HA 1DBZA 2FHYA 3B8BA 3KC1A 3RYDA 2Q8MA 2BJIA 2QVUA 2CZIA 3BIGA 4AS5A 1FPIA 1FJ6A 1YYZA 2VT5A 1BK4A 2CZHA 1AWBA 4HE0A 1FBFA 1CNQA 4GWUA 5T3JA 2QVVA 5ESYA 5EYHA 2WBBA 1K9ZA 3RPLB 1FPGA 1EYKA 1NI9A 1IMAA 2F3BA 1IMEA 3IFAA 2HHMA 2JJKA 1NV2A 3KBZA 1FPJA 4GWXA 1DCUA
chains in the Genus database with same CATH topology
2OPDA 2OPEA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2OPD A;  2OPE A; 
#chains in the Genus database with same CATH topology
 4AS4 A;  2FVZ A;  1FBC A;  4GWS A;  1NV1 A;  4N81 A;  4I40 A;  4GWW A;  1FBE A;  1NV0 A;  1K9Y A;  2OPE A;  3A29 A;  4MJO A;  4GX4 A;  4GBV A;  5I3S A;  4HXV A;  4QXD A;  1IMB A;  1NV6 A;  3KC0 A;  4GX3 A;  5ET6 A;  1YZ0 A;  5IZ3 B;  3RPL A;  4O7I A;  1FTA A;  1G0I A;  2CZK A;  1VDW A;  1XI6 A;  2P3N A;  1NV5 A;  5IZ1 A;  4GX6 A;  1FJ9 A;  1NUX A;  3FBP A;  4HE2 A;  1FRP A;  3BIH A;  1D9Q A;  1RDY A;  5EQ8 A;  3IFC A;  1INP A;  2QVR A;  4KXP A;  5IZ3 A;  1FBH A;  2FIE A;  1NUY A;  4H45 A;  2R8T A;  1LBV A;  5J16 A;  1FBG A;  4FBP A;  1YXI A;  2WEF A;  3T0J A;  1DK4 A;  1EYJ A;  5ET5 A;  4GWY A;  5EQ9 A;  1LBW A;  2FIX A;  5EQA A;  2F3D A;  4GBW A;  1IMD A;  2PCR A;  5ET7 A;  1RDZ A;  2Q74 A;  4I3E A;  2QFL A;  4I3Y A;  1NUW A;  2FBP A;  1SPI A;  1FBP A;  1FPK A;  2GQ1 A;  1LEV A;  1JP4 A;  4GWZ A;  1EYI A;  4HE1 A;  5LDZ A;  2WBD A;  1RDX A;  1FPE A;  1NV3 A;  1NV7 A;  2OX3 A;  5EYG A;  1LBZ A;  2OWZ A;  5EQ7 A;  3ROJ A;  4G61 A;  2Y5L A;  5A5L A;  1FBD A;  5F24 A;  1KA1 A;  2Y5K A;  1FPD A;  3D1R A;  1FPB A;  2P3V A;  3LV0 A;  1FSA A;  1Q9D A;  1IMF A;  4IR8 A;  1FPF A;  3LUZ A;  1KA0 A;  5DW8 A;  1IMC A;  3QMF A;  5ET8 A;  1LBY A;  1LBX A;  2OPD A;  1KZ8 A;  2DDK A;  1QGX A;  5FBP A;  4H46 A;  1NUZ A;  4PTK A;  1NV4 A;  1FPL A;  1G0H A;  1DBZ A;  2FHY A;  3B8B A;  3KC1 A;  3RYD A;  2Q8M A;  2BJI A;  2QVU A;  2CZI A;  3BIG A;  4AS5 A;  1FPI A;  1FJ6 A;  1YYZ A;  2VT5 A;  1BK4 A;  2CZH A;  1AWB A;  4HE0 A;  1FBF A;  1CNQ A;  4GWU A;  5T3J A;  2QVV A;  5ESY A;  5EYH A;  2WBB A;  1K9Z A;  3RPL B;  1FPG A;  1EYK A;  1NI9 A;  1IMA A;  2F3B A;  1IME A;  3IFA A;  2HHM A;  2JJK A;  1NV2 A;  3KBZ A;  1FPJ A;  4GWX A;  1DCU A; 
#chains in the Genus database with same CATH homology
 2OPD A;  2OPE A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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