2OPZA

Avpf bound to bir3-xiap
Total Genus 33
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
33
sequence length
109
structure length
109
Chain Sequence
NFPNSTNLPRNPSMADYEARIFTFGTWIYSVNKEQLARAGFYALGEGDKVKCFHCGGGLTDWKPSEDPWEQHAKWYPGCKYLLEQKGQEYINNIHLTHSLEECLVRTTE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Apoptosis inhibitor
molecule keywords Baculoviral IAP repeat-containing protein 4
publication title Structure-activity based study of the Smac-binding pocket within the BIR3 domain of XIAP.
pubmed doi rcsb
source organism Homo sapiens
total genus 33
structure length 109
sequence length 109
chains with identical sequence B, C, D
ec nomenclature ec 2.3.2.27: RING-type E3 ubiquitin transferase.
pdb deposition date 2007-01-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00653 BIR Inhibitor of Apoptosis domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1170.10 Mainly Alpha Orthogonal Bundle Inhibitor Of Apoptosis Protein (2mihbC-IAP-1); Chain A Inhibitor Of Apoptosis Protein (2mihbC-IAP-1); Chain A 2opzA00
4WVTA 2RAXA 1C9QA 1G73C 1TW6A 3OZ1A 2POPB 3T6PA 5C7CA 4EC4A 1OY7A 5C0LA 4EB9A 2QRAA 3UIHA 4A0NA 2RAWA 1I3OE 4MTIA 3UEDA 2QFAA 4HY4A 1QBHA 2I3HA 3UIKA 2I3IA 5C7AA 3UEHA 4OXCA 3F7GA 3CM7A 1OXQA 1OXNA 2OPYA 3GTAA 2OPZA 1NW9A 1SDZA 3UEEA 2UVLA 4WVSA 3M0DD 1F3HA 1JD4A 3F7HA 1XB1A 3GT9A 3F7IA 4KMNA 3UEGA 4A0JA 4J48A 3MUPA 1G3FA 5C7BA 3UW4A 4HY0A 5C3HA 5C0KA 5C84A 1XOXA 1TFTA 1JD6A 3UIGA 1E31A 3D9UA 3CM2A 4HY5A 3HL5A 4J47A 2POIA 3UIIA 3M1DA 3UW5A 5C3KA 3UEFA 4LGEA 4MTZA 3UIJA 1JD5A 4MU7A 3G76A 1TFQA 5C7DA 2VSLA 1M4MA 3UECA 4J44A 1SE0A 4J46A 4KJUA 3M0AD 4KJVA 3EYLA 1F9XA 5C83A 1Q4QA 3CLXA 2VM5A 3SIPE 4J45A 1XB0A 4WVUA 3SIQA 4A0IA 3D9TA 4J3YA 4KMPA 3UEIA 2JK7A 4LGUA
chains in the Genus database with same CATH superfamily
4WVTA 2RAXA 1C9QA 1G73C 1TW6A 3OZ1A 2POPB 3T6PA 5C7CA 4EC4A 1OY7A 5C0LA 4EB9A 2QRAA 3UIHA 4A0NA 2RAWA 1I3OE 4MTIA 3UEDA 2QFAA 4HY4A 1QBHA 2I3HA 3UIKA 2I3IA 5C7AA 3UEHA 4OXCA 3F7GA 3CM7A 1OXQA 1OXNA 2OPYA 3GTAA 2OPZA 1NW9A 1SDZA 3UEEA 2UVLA 4WVSA 3M0DD 1F3HA 1JD4A 3F7HA 1XB1A 3GT9A 3F7IA 4KMNA 3UEGA 4A0JA 4J48A 3MUPA 1G3FA 5C7BA 3UW4A 4HY0A 5C3HA 5C0KA 5C84A 1XOXA 1TFTA 1JD6A 3UIGA 1E31A 3D9UA 3CM2A 4HY5A 3HL5A 4J47A 2POIA 3UIIA 3M1DA 3UW5A 5C3KA 3UEFA 4LGEA 4MTZA 3UIJA 1JD5A 4MU7A 3G76A 1TFQA 5C7DA 2VSLA 1M4MA 3UECA 4J44A 1SE0A 4J46A 4KJUA 3M0AD 4KJVA 3EYLA 1F9XA 5C83A 1Q4QA 3CLXA 2VM5A 3SIPE 4J45A 1XB0A 4WVUA 3SIQA 4A0IA 3D9TA 4J3YA 4KMPA 3UEIA 2JK7A 4LGUA
chains in the Genus database with same CATH topology
4WVTA 2RAXA 1C9QA 1G73C 1TW6A 3OZ1A 2POPB 3T6PA 5C7CA 4EC4A 1OY7A 5C0LA 4EB9A 2QRAA 3UIHA 4A0NA 2RAWA 1I3OE 4MTIA 3UEDA 2QFAA 4HY4A 1QBHA 2I3HA 3UIKA 2I3IA 5C7AA 3UEHA 4OXCA 3F7GA 3CM7A 1OXQA 1OXNA 2OPYA 3GTAA 2OPZA 1NW9A 1SDZA 3UEEA 2UVLA 4WVSA 3M0DD 1F3HA 1JD4A 3F7HA 1XB1A 3GT9A 3F7IA 4KMNA 3UEGA 4A0JA 4J48A 3MUPA 1G3FA 5C7BA 3UW4A 4HY0A 5C3HA 5C0KA 5C84A 1XOXA 1TFTA 1JD6A 3UIGA 1E31A 3D9UA 3CM2A 4HY5A 3HL5A 4J47A 2POIA 3UIIA 3M1DA 3UW5A 5C3KA 3UEFA 4LGEA 4MTZA 3UIJA 1JD5A 4MU7A 3G76A 1TFQA 5C7DA 2VSLA 1M4MA 3UECA 4J44A 1SE0A 4J46A 4KJUA 3M0AD 4KJVA 3EYLA 1F9XA 5C83A 1Q4QA 3CLXA 2VM5A 3SIPE 4J45A 1XB0A 4WVUA 3SIQA 4A0IA 3D9TA 4J3YA 4KMPA 3UEIA 2JK7A 4LGUA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4WVT A;  2RAX A;  1C9Q A;  1G73 C;  1TW6 A;  3OZ1 A;  2POP B;  3T6P A;  5C7C A;  4EC4 A;  1OY7 A;  5C0L A;  4EB9 A;  2QRA A;  3UIH A;  4A0N A;  2RAW A;  1I3O E;  4MTI A;  3UED A;  2QFA A;  4HY4 A;  1QBH A;  2I3H A;  3UIK A;  2I3I A;  5C7A A;  3UEH A;  4OXC A;  3F7G A;  3CM7 A;  1OXQ A;  1OXN A;  2OPY A;  3GTA A;  2OPZ A;  1NW9 A;  1SDZ A;  3UEE A;  2UVL A;  4WVS A;  3M0D D;  1F3H A;  1JD4 A;  3F7H A;  1XB1 A;  3GT9 A;  3F7I A;  4KMN A;  3UEG A;  4A0J A;  4J48 A;  3MUP A;  1G3F A;  5C7B A;  3UW4 A;  4HY0 A;  5C3H A;  5C0K A;  5C84 A;  1XOX A;  1TFT A;  1JD6 A;  3UIG A;  1E31 A;  3D9U A;  3CM2 A;  4HY5 A;  3HL5 A;  4J47 A;  2POI A;  3UII A;  3M1D A;  3UW5 A;  5C3K A;  3UEF A;  4LGE A;  4MTZ A;  3UIJ A;  1JD5 A;  4MU7 A;  3G76 A;  1TFQ A;  5C7D A;  2VSL A;  1M4M A;  3UEC A;  4J44 A;  1SE0 A;  4J46 A;  4KJU A;  3M0A D;  4KJV A;  3EYL A;  1F9X A;  5C83 A;  1Q4Q A;  3CLX A;  2VM5 A;  3SIP E;  4J45 A;  1XB0 A;  4WVU A;  3SIQ A;  4A0I A;  3D9T A;  4J3Y A;  4KMP A;  3UEI A;  2JK7 A;  4LGU A; 
#chains in the Genus database with same CATH topology
 4WVT A;  2RAX A;  1C9Q A;  1G73 C;  1TW6 A;  3OZ1 A;  2POP B;  3T6P A;  5C7C A;  4EC4 A;  1OY7 A;  5C0L A;  4EB9 A;  2QRA A;  3UIH A;  4A0N A;  2RAW A;  1I3O E;  4MTI A;  3UED A;  2QFA A;  4HY4 A;  1QBH A;  2I3H A;  3UIK A;  2I3I A;  5C7A A;  3UEH A;  4OXC A;  3F7G A;  3CM7 A;  1OXQ A;  1OXN A;  2OPY A;  3GTA A;  2OPZ A;  1NW9 A;  1SDZ A;  3UEE A;  2UVL A;  4WVS A;  3M0D D;  1F3H A;  1JD4 A;  3F7H A;  1XB1 A;  3GT9 A;  3F7I A;  4KMN A;  3UEG A;  4A0J A;  4J48 A;  3MUP A;  1G3F A;  5C7B A;  3UW4 A;  4HY0 A;  5C3H A;  5C0K A;  5C84 A;  1XOX A;  1TFT A;  1JD6 A;  3UIG A;  1E31 A;  3D9U A;  3CM2 A;  4HY5 A;  3HL5 A;  4J47 A;  2POI A;  3UII A;  3M1D A;  3UW5 A;  5C3K A;  3UEF A;  4LGE A;  4MTZ A;  3UIJ A;  1JD5 A;  4MU7 A;  3G76 A;  1TFQ A;  5C7D A;  2VSL A;  1M4M A;  3UEC A;  4J44 A;  1SE0 A;  4J46 A;  4KJU A;  3M0A D;  4KJV A;  3EYL A;  1F9X A;  5C83 A;  1Q4Q A;  3CLX A;  2VM5 A;  3SIP E;  4J45 A;  1XB0 A;  4WVU A;  3SIQ A;  4A0I A;  3D9T A;  4J3Y A;  4KMP A;  3UEI A;  2JK7 A;  4LGU A; 
#chains in the Genus database with same CATH homology
 4WVT A;  2RAX A;  1C9Q A;  1G73 C;  1TW6 A;  3OZ1 A;  2POP B;  3T6P A;  5C7C A;  4EC4 A;  1OY7 A;  5C0L A;  4EB9 A;  2QRA A;  3UIH A;  4A0N A;  2RAW A;  1I3O E;  4MTI A;  3UED A;  2QFA A;  4HY4 A;  1QBH A;  2I3H A;  3UIK A;  2I3I A;  5C7A A;  3UEH A;  4OXC A;  3F7G A;  3CM7 A;  1OXQ A;  1OXN A;  2OPY A;  3GTA A;  2OPZ A;  1NW9 A;  1SDZ A;  3UEE A;  2UVL A;  4WVS A;  3M0D D;  1F3H A;  1JD4 A;  3F7H A;  1XB1 A;  3GT9 A;  3F7I A;  4KMN A;  3UEG A;  4A0J A;  4J48 A;  3MUP A;  1G3F A;  5C7B A;  3UW4 A;  4HY0 A;  5C3H A;  5C0K A;  5C84 A;  1XOX A;  1TFT A;  1JD6 A;  3UIG A;  1E31 A;  3D9U A;  3CM2 A;  4HY5 A;  3HL5 A;  4J47 A;  2POI A;  3UII A;  3M1D A;  3UW5 A;  5C3K A;  3UEF A;  4LGE A;  4MTZ A;  3UIJ A;  1JD5 A;  4MU7 A;  3G76 A;  1TFQ A;  5C7D A;  2VSL A;  1M4M A;  3UEC A;  4J44 A;  1SE0 A;  4J46 A;  4KJU A;  3M0A D;  4KJV A;  3EYL A;  1F9X A;  5C83 A;  1Q4Q A;  3CLX A;  2VM5 A;  3SIP E;  4J45 A;  1XB0 A;  4WVU A;  3SIQ A;  4A0I A;  3D9T A;  4J3Y A;  4KMP A;  3UEI A;  2JK7 A;  4LGU A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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