2OTJK

13-deoxytedanolide bound to the large subunit of haloarcula marismortui
Total Genus 28
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
28
sequence length
132
structure length
132
Chain Sequence
MEALGADVTQGLEKGSLITCADNTGARELKVISVHGYSGTKNRLPKAGLGDKITVSVTKGTPEMRRQVLEAVVVRQRKPIRRPDGTRVKFEDNAAVIVDENEDPRGTELKGPIAREVAQRFGSVASAATMIV
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Ribosome
molecule keywords 23S ribosomal RNA
publication title The Structures of Antibiotics Bound to the E Site Region of the 50 S Ribosomal Subunit of Haloarcula marismortui: 13-Deoxytedanolide and Girodazole.
pubmed doi rcsb
total genus 28
structure length 132
sequence length 132
ec nomenclature
pdb deposition date 2007-02-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
K PF00238 Ribosomal_L14 Ribosomal protein L14p/L23e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.150.20 Mainly Beta Beta Barrel Ribosomal Protein L14 Ribosomal protein L14 2otjK00
1YI2K 4IOAH 4WFAH 5GAEL 5JVHH 3CCMK 3CCQK 2OTLK 3CC7K 1VQ4K 1Q7YL 3CCSK 4UY8K 3CMAK 5H1SM 2ZJPH 1KC8L 3CPWJ 5DM6H 2ZJQH 3DLLH 3CCEK 3CXCJ 3G6EK 3CC2K 1QVFJ 1VQ9K 3CD6K 3PIOH 3CCVK 1S72K 1VQPK 1VQOK 1YJWK 1K8AL 1Q81L 1QVGJ 4WFNH 3CC4K 1NJIL 4V19O 2QEXK 1N8RL 1K73L 4WFBH 5GAHL 4U67H 3OW2J 5GAGL 1VQ6K 1JJ2J 3CMEK 2QA4K 1VQ7K 5HL7H 5MLCM 3I56K 5AN9E 3CCLK 1W2BJ 1YITK 1VQ5K 3J7ZK 1YIJK 3CCRK 1YHQK 1VQ8K 3I55K 4IOCH 5JVGH 1VQLK 1VQNK 4IO9H 1K9ML 1M1KL 1YJNK 1Q82L 1KQSJ 3CCUK 2ZJRH 2OTJK 3PIPH 3CCJK 3G4SK 1WHIA 1VQKK 4WCEH 1Q86L 4WF9H 1YJ9K 3G71K 5DM7H 3J7YL 3CF5H 1VQMK 1M90L 5GADL 1KD1L
chains in the Genus database with same CATH superfamily
1YI2K 4IOAH 4WFAH 5GAEL 5JVHH 3CCMK 3CCQK 2OTLK 3CC7K 1VQ4K 1Q7YL 3CCSK 4UY8K 3CMAK 5H1SM 2ZJPH 1KC8L 3CPWJ 5DM6H 2ZJQH 3DLLH 3CCEK 3CXCJ 3G6EK 3CC2K 1QVFJ 1VQ9K 3CD6K 3PIOH 3CCVK 1S72K 1VQPK 1VQOK 1YJWK 1K8AL 1Q81L 1QVGJ 4WFNH 3CC4K 1NJIL 4V19O 2QEXK 1N8RL 1K73L 4WFBH 5GAHL 4U67H 3OW2J 5GAGL 1VQ6K 1JJ2J 3CMEK 2QA4K 1VQ7K 5HL7H 5MLCM 3I56K 5AN9E 3CCLK 1W2BJ 1YITK 1VQ5K 3J7ZK 1YIJK 3CCRK 1YHQK 1VQ8K 3I55K 4IOCH 5JVGH 1VQLK 1VQNK 4IO9H 1K9ML 1M1KL 1YJNK 1Q82L 1KQSJ 3CCUK 2ZJRH 2OTJK 3PIPH 3CCJK 3G4SK 1WHIA 1VQKK 4WCEH 1Q86L 4WF9H 1YJ9K 3G71K 5DM7H 3J7YL 3CF5H 1VQMK 1M90L 5GADL 1KD1L
chains in the Genus database with same CATH topology
1YI2K 4IOAH 4WFAH 5GAEL 5JVHH 3CCMK 3CCQK 2OTLK 3CC7K 1VQ4K 1Q7YL 3CCSK 4UY8K 3CMAK 5H1SM 2ZJPH 1KC8L 3CPWJ 5DM6H 2ZJQH 3DLLH 3CCEK 3CXCJ 3G6EK 3CC2K 1QVFJ 1VQ9K 3CD6K 3PIOH 3CCVK 1S72K 1VQPK 1VQOK 1YJWK 1K8AL 1Q81L 1QVGJ 4WFNH 3CC4K 1NJIL 4V19O 2QEXK 1N8RL 1K73L 4WFBH 5GAHL 4U67H 3OW2J 5GAGL 1VQ6K 1JJ2J 3CMEK 2QA4K 1VQ7K 5HL7H 5MLCM 3I56K 5AN9E 3CCLK 1W2BJ 1YITK 1VQ5K 3J7ZK 1YIJK 3CCRK 1YHQK 1VQ8K 3I55K 4IOCH 5JVGH 1VQLK 1VQNK 4IO9H 1K9ML 1M1KL 1YJNK 1Q82L 1KQSJ 3CCUK 2ZJRH 2OTJK 3PIPH 3CCJK 3G4SK 1WHIA 1VQKK 4WCEH 1Q86L 4WF9H 1YJ9K 3G71K 5DM7H 3J7YL 3CF5H 1VQMK 1M90L 5GADL 1KD1L
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1YI2 K;  4IOA H;  4WFA H;  5GAE L;  5JVH H;  3CCM K;  3CCQ K;  2OTL K;  3CC7 K;  1VQ4 K;  1Q7Y L;  3CCS K;  4UY8 K;  3CMA K;  5H1S M;  2ZJP H;  1KC8 L;  3CPW J;  5DM6 H;  2ZJQ H;  3DLL H;  3CCE K;  3CXC J;  3G6E K;  3CC2 K;  1QVF J;  1VQ9 K;  3CD6 K;  3PIO H;  3CCV K;  1S72 K;  1VQP K;  1VQO K;  1YJW K;  1K8A L;  1Q81 L;  1QVG J;  4WFN H;  3CC4 K;  1NJI L;  4V19 O;  2QEX K;  1N8R L;  1K73 L;  4WFB H;  5GAH L;  4U67 H;  3OW2 J;  5GAG L;  1VQ6 K;  1JJ2 J;  3CME K;  2QA4 K;  1VQ7 K;  5HL7 H;  5MLC M;  3I56 K;  5AN9 E;  3CCL K;  1W2B J;  1YIT K;  1VQ5 K;  3J7Z K;  1YIJ K;  3CCR K;  1YHQ K;  1VQ8 K;  3I55 K;  4IOC H;  5JVG H;  1VQL K;  1VQN K;  4IO9 H;  1K9M L;  1M1K L;  1YJN K;  1Q82 L;  1KQS J;  3CCU K;  2ZJR H;  2OTJ K;  3PIP H;  3CCJ K;  3G4S K;  1WHI A;  1VQK K;  4WCE H;  1Q86 L;  4WF9 H;  1YJ9 K;  3G71 K;  5DM7 H;  3J7Y L;  3CF5 H;  1VQM K;  1M90 L;  5GAD L;  1KD1 L; 
#chains in the Genus database with same CATH topology
 1YI2 K;  4IOA H;  4WFA H;  5GAE L;  5JVH H;  3CCM K;  3CCQ K;  2OTL K;  3CC7 K;  1VQ4 K;  1Q7Y L;  3CCS K;  4UY8 K;  3CMA K;  5H1S M;  2ZJP H;  1KC8 L;  3CPW J;  5DM6 H;  2ZJQ H;  3DLL H;  3CCE K;  3CXC J;  3G6E K;  3CC2 K;  1QVF J;  1VQ9 K;  3CD6 K;  3PIO H;  3CCV K;  1S72 K;  1VQP K;  1VQO K;  1YJW K;  1K8A L;  1Q81 L;  1QVG J;  4WFN H;  3CC4 K;  1NJI L;  4V19 O;  2QEX K;  1N8R L;  1K73 L;  4WFB H;  5GAH L;  4U67 H;  3OW2 J;  5GAG L;  1VQ6 K;  1JJ2 J;  3CME K;  2QA4 K;  1VQ7 K;  5HL7 H;  5MLC M;  3I56 K;  5AN9 E;  3CCL K;  1W2B J;  1YIT K;  1VQ5 K;  3J7Z K;  1YIJ K;  3CCR K;  1YHQ K;  1VQ8 K;  3I55 K;  4IOC H;  5JVG H;  1VQL K;  1VQN K;  4IO9 H;  1K9M L;  1M1K L;  1YJN K;  1Q82 L;  1KQS J;  3CCU K;  2ZJR H;  2OTJ K;  3PIP H;  3CCJ K;  3G4S K;  1WHI A;  1VQK K;  4WCE H;  1Q86 L;  4WF9 H;  1YJ9 K;  3G71 K;  5DM7 H;  3J7Y L;  3CF5 H;  1VQM K;  1M90 L;  5GAD L;  1KD1 L; 
#chains in the Genus database with same CATH homology
 1YI2 K;  4IOA H;  4WFA H;  5GAE L;  5JVH H;  3CCM K;  3CCQ K;  2OTL K;  3CC7 K;  1VQ4 K;  1Q7Y L;  3CCS K;  4UY8 K;  3CMA K;  5H1S M;  2ZJP H;  1KC8 L;  3CPW J;  5DM6 H;  2ZJQ H;  3DLL H;  3CCE K;  3CXC J;  3G6E K;  3CC2 K;  1QVF J;  1VQ9 K;  3CD6 K;  3PIO H;  3CCV K;  1S72 K;  1VQP K;  1VQO K;  1YJW K;  1K8A L;  1Q81 L;  1QVG J;  4WFN H;  3CC4 K;  1NJI L;  4V19 O;  2QEX K;  1N8R L;  1K73 L;  4WFB H;  5GAH L;  4U67 H;  3OW2 J;  5GAG L;  1VQ6 K;  1JJ2 J;  3CME K;  2QA4 K;  1VQ7 K;  5HL7 H;  5MLC M;  3I56 K;  5AN9 E;  3CCL K;  1W2B J;  1YIT K;  1VQ5 K;  3J7Z K;  1YIJ K;  3CCR K;  1YHQ K;  1VQ8 K;  3I55 K;  4IOC H;  5JVG H;  1VQL K;  1VQN K;  4IO9 H;  1K9M L;  1M1K L;  1YJN K;  1Q82 L;  1KQS J;  3CCU K;  2ZJR H;  2OTJ K;  3PIP H;  3CCJ K;  3G4S K;  1WHI A;  1VQK K;  4WCE H;  1Q86 L;  4WF9 H;  1YJ9 K;  3G71 K;  5DM7 H;  3J7Y L;  3CF5 H;  1VQM K;  1M90 L;  5GAD L;  1KD1 L; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...