2OTJR

13-deoxytedanolide bound to the large subunit of haloarcula marismortui
Total Genus 35
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
35
sequence length
150
structure length
150
Chain Sequence
GISYSVEADPDTTAKAMLRERQMSFKHSKAIAREIKGKTAGEAVDYLEAVIEGDQPVPFKQHNSGVGHKSKVDGWDAGRYPEKASKAFLDLLENAVGNADHQGFDGEAMTIKHVAAHKVGEQQGRKPRAMGRASAWNSPQVDVELILEEP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome
molecule keywords 23S ribosomal RNA
publication title The Structures of Antibiotics Bound to the E Site Region of the 50 S Ribosomal Subunit of Haloarcula marismortui: 13-Deoxytedanolide and Girodazole.
pubmed doi rcsb
total genus 35
structure length 150
sequence length 150
ec nomenclature
pdb deposition date 2007-02-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
R PF00237 Ribosomal_L22 Ribosomal protein L22p/L17e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.470.10 Alpha Beta Alpha-Beta Complex Ribosomal Protein L22; Chain A Ribosomal protein L22/L17 2otjR00
2QEXR 1QVFQ 5H1SU 3CCLR 1VQ5R 3I55R 1Q82S 1VQ6R 5GADT 1VQPR 5DM7P 4IOCP 3CCRR 3G4SR 1N8RS 4IOAP 5MLCU 3DLLP 1Q81S 1VQ7R 1YJ9R 3CMAR 1W2BQ 1QVGQ 3PIPP 1Q7YS 5GAHT 2QA4R 5GAGT 1YITR 3OW2Q 4WFNP 1BXEA 2ZJRP 4V19W 3CD6R 1VQ8R 4U67P 1K8AS 3CCVR 2OTLR 3J7ZS 3CC4R 1YHQR 2ZJQP 4WFAP 3CCUR 1VQNR 5DM6P 1VQ9R 3CPWQ 1VQKR 4UY8S 3I56R 1VQOR 1K73S 5JVGP 3CC7R 5JVHP 3CF5P 1YI2R 3CCSR 1Q86S 4WFBP 1KC8S 5GAET 1M90S 3J7YT 1M1KS 3PIOP 1YJNR 3CXCQ 1YIJR 1KQSQ 1YJWR 3CMER 5HL7P 3CCMR 1S72R 1JJ2Q 3CC2R 2OTJR 1VQMR 1VQLR 3CCER 1NJIS 1I4JA 4IO9P 4WCEP 1VQ4R 3G6ER 3CCJR 3G71R 1K9MS 1KD1S 2ZJPP 3CCQR 4WF9P
chains in the Genus database with same CATH superfamily
2C43A 3GWMA 2QEXR 1QVFQ 1FTEA 4DXEA 5H1SU 3HYKA 3CCLR 1VQ5R 3I55R 4JM7A 1Q82S 1VQ6R 5GADT 1VQPR 2D0OA 3NFDA 5DM7P 4IOCP 3CCRR 3G4SR 1N8RS 4IOAP 5MLCU 5CMOA 3DLLP 1Q81S 2D0PA 1VQ7R 3H7QA 1YJ9R 3CMAR 1W2BQ 1QVGQ 2BYDA 3PIPP 1Q7YS 5GAHT 2WASA 2QA4R 2WDSA 5GAGT 1YITR 2BDDA 3OW2Q 4WFNP 1BXEA 4MRTA 2ZJRP 3NE3B 4V19W 1F80A 2JCAA 3CD6R 1VQ8R 2WATA 4U67P 1K8AS 3CCVR 2OTLR 3NE9A 3NE1A 3J7ZS 1F7TA 3CC4R 1YHQR 1FTHA 4WFAP 2ZJQP 3CCUR 5DM6P 1VQNR 1VQ9R 3CPWQ 1VQKR 4UY8S 3I56R 1VQOR 3QMNA 1K73S 5JVGP 3CC7R 5JVHP 2JBZA 3CF5P 1YI2R 2WDYA 3CCSR 1Q86S 4WFBP 1KC8S 5GAET 1F7LA 1QR0A 1M90S 3J7YT 1M1KS 1NBWA 2CG5A 3PIOP 1FTFA 1YJNR 3CXCQ 1YIJR 1YJWR 1KQSQ 3CMER 2WDOA 5HL7P 3CCMR 1S72R 1JJ2Q 2QG8A 3CC2R 2OTJR 1VQMR 1VQLR 3CCER 1NJIS 2WASB 3HQJA 1I4JA 4IO9P 4WCEP 1VQ4R 3G6ER 3CCJR 5CXDA 4HC6A 3G71R 1K9MS 1KD1S 2ZJPP 3CCQR 4WF9P
chains in the Genus database with same CATH topology
2QEXR 1QVFQ 5H1SU 3CCLR 1VQ5R 3I55R 1Q82S 1VQ6R 5GADT 1VQPR 5DM7P 4IOCP 3CCRR 3G4SR 1N8RS 4IOAP 5MLCU 3DLLP 1Q81S 1VQ7R 1YJ9R 3CMAR 1W2BQ 1QVGQ 3PIPP 1Q7YS 5GAHT 2QA4R 5GAGT 1YITR 3OW2Q 4WFNP 1BXEA 2ZJRP 4V19W 3CD6R 1VQ8R 4U67P 1K8AS 3CCVR 2OTLR 3J7ZS 3CC4R 1YHQR 2ZJQP 4WFAP 3CCUR 1VQNR 5DM6P 1VQ9R 3CPWQ 1VQKR 4UY8S 3I56R 1VQOR 1K73S 5JVGP 3CC7R 5JVHP 3CF5P 1YI2R 3CCSR 1Q86S 4WFBP 1KC8S 5GAET 1M90S 3J7YT 1M1KS 3PIOP 1YJNR 3CXCQ 1YIJR 1KQSQ 1YJWR 3CMER 5HL7P 3CCMR 1S72R 1JJ2Q 3CC2R 2OTJR 1VQMR 1VQLR 3CCER 1NJIS 1I4JA 4IO9P 4WCEP 1VQ4R 3G6ER 3CCJR 3G71R 1K9MS 1KD1S 2ZJPP 3CCQR 4WF9P
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2QEX R;  1QVF Q;  5H1S U;  3CCL R;  1VQ5 R;  3I55 R;  1Q82 S;  1VQ6 R;  5GAD T;  1VQP R;  5DM7 P;  4IOC P;  3CCR R;  3G4S R;  1N8R S;  4IOA P;  5MLC U;  3DLL P;  1Q81 S;  1VQ7 R;  1YJ9 R;  3CMA R;  1W2B Q;  1QVG Q;  3PIP P;  1Q7Y S;  5GAH T;  2QA4 R;  5GAG T;  1YIT R;  3OW2 Q;  4WFN P;  1BXE A;  2ZJR P;  4V19 W;  3CD6 R;  1VQ8 R;  4U67 P;  1K8A S;  3CCV R;  2OTL R;  3J7Z S;  3CC4 R;  1YHQ R;  2ZJQ P;  4WFA P;  3CCU R;  1VQN R;  5DM6 P;  1VQ9 R;  3CPW Q;  1VQK R;  4UY8 S;  3I56 R;  1VQO R;  1K73 S;  5JVG P;  3CC7 R;  5JVH P;  3CF5 P;  1YI2 R;  3CCS R;  1Q86 S;  4WFB P;  1KC8 S;  5GAE T;  1M90 S;  3J7Y T;  1M1K S;  3PIO P;  1YJN R;  3CXC Q;  1YIJ R;  1KQS Q;  1YJW R;  3CME R;  5HL7 P;  3CCM R;  1S72 R;  1JJ2 Q;  3CC2 R;  2OTJ R;  1VQM R;  1VQL R;  3CCE R;  1NJI S;  1I4J A;  4IO9 P;  4WCE P;  1VQ4 R;  3G6E R;  3CCJ R;  3G71 R;  1K9M S;  1KD1 S;  2ZJP P;  3CCQ R;  4WF9 P; 
#chains in the Genus database with same CATH topology
 2C43 A;  3GWM A;  2QEX R;  1QVF Q;  1FTE A;  4DXE A;  5H1S U;  3HYK A;  3CCL R;  1VQ5 R;  3I55 R;  4JM7 A;  1Q82 S;  1VQ6 R;  5GAD T;  1VQP R;  2D0O A;  3NFD A;  5DM7 P;  4IOC P;  3CCR R;  3G4S R;  1N8R S;  4IOA P;  5MLC U;  5CMO A;  3DLL P;  1Q81 S;  2D0P A;  1VQ7 R;  3H7Q A;  1YJ9 R;  3CMA R;  1W2B Q;  1QVG Q;  2BYD A;  3PIP P;  1Q7Y S;  5GAH T;  2WAS A;  2QA4 R;  2WDS A;  5GAG T;  1YIT R;  2BDD A;  3OW2 Q;  4WFN P;  1BXE A;  4MRT A;  2ZJR P;  3NE3 B;  4V19 W;  1F80 A;  2JCA A;  3CD6 R;  1VQ8 R;  2WAT A;  4U67 P;  1K8A S;  3CCV R;  2OTL R;  3NE9 A;  3NE1 A;  3J7Z S;  1F7T A;  3CC4 R;  1YHQ R;  1FTH A;  4WFA P;  2ZJQ P;  3CCU R;  5DM6 P;  1VQN R;  1VQ9 R;  3CPW Q;  1VQK R;  4UY8 S;  3I56 R;  1VQO R;  3QMN A;  1K73 S;  5JVG P;  3CC7 R;  5JVH P;  2JBZ A;  3CF5 P;  1YI2 R;  2WDY A;  3CCS R;  1Q86 S;  4WFB P;  1KC8 S;  5GAE T;  1F7L A;  1QR0 A;  1M90 S;  3J7Y T;  1M1K S;  1NBW A;  2CG5 A;  3PIO P;  1FTF A;  1YJN R;  3CXC Q;  1YIJ R;  1YJW R;  1KQS Q;  3CME R;  2WDO A;  5HL7 P;  3CCM R;  1S72 R;  1JJ2 Q;  2QG8 A;  3CC2 R;  2OTJ R;  1VQM R;  1VQL R;  3CCE R;  1NJI S;  2WAS B;  3HQJ A;  1I4J A;  4IO9 P;  4WCE P;  1VQ4 R;  3G6E R;  3CCJ R;  5CXD A;  4HC6 A;  3G71 R;  1K9M S;  1KD1 S;  2ZJP P;  3CCQ R;  4WF9 P; 
#chains in the Genus database with same CATH homology
 2QEX R;  1QVF Q;  5H1S U;  3CCL R;  1VQ5 R;  3I55 R;  1Q82 S;  1VQ6 R;  5GAD T;  1VQP R;  5DM7 P;  4IOC P;  3CCR R;  3G4S R;  1N8R S;  4IOA P;  5MLC U;  3DLL P;  1Q81 S;  1VQ7 R;  1YJ9 R;  3CMA R;  1W2B Q;  1QVG Q;  3PIP P;  1Q7Y S;  5GAH T;  2QA4 R;  5GAG T;  1YIT R;  3OW2 Q;  4WFN P;  1BXE A;  2ZJR P;  4V19 W;  3CD6 R;  1VQ8 R;  4U67 P;  1K8A S;  3CCV R;  2OTL R;  3J7Z S;  3CC4 R;  1YHQ R;  2ZJQ P;  4WFA P;  3CCU R;  1VQN R;  5DM6 P;  1VQ9 R;  3CPW Q;  1VQK R;  4UY8 S;  3I56 R;  1VQO R;  1K73 S;  5JVG P;  3CC7 R;  5JVH P;  3CF5 P;  1YI2 R;  3CCS R;  1Q86 S;  4WFB P;  1KC8 S;  5GAE T;  1M90 S;  3J7Y T;  1M1K S;  3PIO P;  1YJN R;  3CXC Q;  1YIJ R;  1KQS Q;  1YJW R;  3CME R;  5HL7 P;  3CCM R;  1S72 R;  1JJ2 Q;  3CC2 R;  2OTJ R;  1VQM R;  1VQL R;  3CCE R;  1NJI S;  1I4J A;  4IO9 P;  4WCE P;  1VQ4 R;  3G6E R;  3CCJ R;  3G71 R;  1K9M S;  1KD1 S;  2ZJP P;  3CCQ R;  4WF9 P; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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