2OTLH

Girodazole bound to the large subunit of haloarcula marismortui
Total Genus 40
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
40
sequence length
171
structure length
160
Chain Sequence
KPASMYRDIDKPAYTRREYITGIPGSKIAQHKMGRKQKDADDYPVQISLIVEETVQLRHGSLEASRLSANRHLIKELGEEGDYKMTLRKFPHQVLRENKDGMRAAFGKIVGTAARVQAGEQLFTAYCNVEDAEHVKEAFRRAYNKITPSCRIDSSPAGNA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome
molecule keywords 23S ribosomal RNA
publication title The Structures of Antibiotics Bound to the E Site Region of the 50 S Ribosomal Subunit of Haloarcula marismortui: 13-Deoxytedanolide and Girodazole.
pubmed doi rcsb
total genus 40
structure length 160
sequence length 171
ec nomenclature
pdb deposition date 2007-02-08
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1170.10 Alpha Beta Alpha-Beta Complex Aldehyde Oxidoreductase; domain 3 Ribosomal protein L10e/L16 2otlH00
1Q82J 1K8AJ 1VQ5H 1YJNH 1K9MJ 1YJ9H 1VQKH 5DM6J 2ZJQJ 3CCEH 1S72H 3CCMH 4IOCJ 1KD1J 1VQ8H 1VQPH 1W2BH 1Q86J 1YHQH 3PIOJ 3J7ZM 3CMEH 4IO9J 3OW2H 3I56H 4WFNJ 3CCVH 1VQNH 3CCLH 2ZJRJ 5DM7J 3CPWH 5H1SO 3CCRH 1M90J 1N8RJ 3G6EH 3CCQH 2ZJPJ 4WFBJ 3CC4H 3CCSH 3DLLJ 3CD6H 5JVHJ 1VQLH 3CC7H 1VQ7H 1QVFH 5MLCO 1VQMH 1Q7YJ 5HL7J 1KQSH 1YITH 1Y69K 4UY8M 3CXCH 3CF5J 4WCEJ 1VQOH 2OTLH 2OTJH 3CCUH 1YI2H 3G4SH 1QVGH 1VQ4H 4U67J 4IOAJ 4WFAJ 3I55H 2QA4H 1VQ6H 3CMAH 5JVGJ 1JJ2H 1YIJH 1VQ9H 3CCJH 5AN9F 1NJIJ 5GADN 1WKIA 1YJWH 4WF9J 1Q81J 5GAHN 1M1KJ 3PIPJ 5GAGN 2QEXH 3CC2H 2PA2A 5GAEN 1K73J 3G71H 1KC8J
chains in the Genus database with same CATH superfamily
1Q82J 4C7ZA 5AYXA 1YTEA 3EUB4 1VDVA 1K8AJ 1VQ5H 1YJNH 3NRZC 4XR5A 1K9MJ 1YJ9H 1VQKH 1FFVB 5DM6J 2ZJQJ 4C80A 5HUPA 3CCEH 2W55B 1S72H 3CCMH 4IOCJ 1KD1J 2W3RB 1VQ8H 3L4PA 3B9JC 4YYYA 3WO1A 1VQPH 1FIQC 1W2BH 1Q86J 1QPNA 3TQVA 2B7PA 1YTDA 1YHQH 3WNZA 3PIOJ 1BRWA 1N62B 3AM9A 4GA5A 4ZOHA 1ZXIB 3J7ZM 3L0GA 3CMEH 4IO9J 4US8A 3H5QA 3OW2H 3I56H 4WFNJ 1N5WB 3CCVH 2Q5WE 3AMZA 1VQ6H 1NVJA 1VQNH 5HULA 3RPFA 3CCLH 5DM7J 2ZJRJ 3CPWH 1O4UA 3NVZC 5H1SO 3CCRH 1M90J 2QIEA 1X1OA 1QPOA 2WK5A 1N8RJ 3C2FA 4US9A 3G6EH 3CCQH 2ZJPJ 3C2RA 4EAFA 4WFBJ 1NVIE 2WP4A 3FAHA 3CC4H 3PAJA 3CCSH 3DLLJ 2I1OA 3CD6H 1AZYA 5JVHJ 1VQLH 4KWVA 3AN1A 3ETRC 3CC7H 1VLBA 2JBMA 1N60B 1OTPA 2I14A 4YEKA 2W3SB 1VQ7H 4IOAJ 1QVFH 1VQMH 1Q7YJ 5HL7J 1KQSH 2TPTA 1YITH 3SR6C 2QA4H 1Y69K 4UY8M 3CXCH 3CF5J 1UOUA 1JRPB 5EP8A 3NVVC 2WK6A 4WCEJ 3C2OA 1VQOH 2OTLH 1RM6A 1FFUB 3CCUH 2OTJH 4GA4A 2DSJA 1YI2H 1FMAE 3BIIE 2E3TA 3G4SH 1QVGH 1KC8J 3NS1C 3GNNA 1VQ4H 1N61B 3C2VA 4GA6A 4AP8A 1N63B 1YTKA 4U67J 4C7YA 1DGJA 1N5XA 2B7NA 1SIJA 1SB3A 4I9AA 5AYZA 3VMMA 4WFAJ 1FM0E 3I55H 3C2EA 1FO4A 3FC4A 3CMAH 3NVWC 5JVGJ 1JJ2H 5AYYA 1YIJH 1VQ9H 3CCJH 5AN9F 1QAPA 1NJIJ 5GADN 5MPOC 2J0FA 1WKIA 1YJWH 4EADA 3NVYC 4WF9J 4KWWA 1Q81J 2B7QA 5GAHN 1QPQA 4LHMA 4X46A 1M1KJ 5EY3A 3G71H 1V97A 1WYGA 1QPRA 3PIPJ 5GAGN 2W54B 5HUOA 1JROB 2QEXH 3CC2H 2PA2A 5GAEN 4USAA 2OMDA 1K73J 5MLCO 3WO0A
chains in the Genus database with same CATH topology
1Q82J 1K8AJ 1VQ5H 1YJNH 1K9MJ 1YJ9H 1VQKH 5DM6J 2ZJQJ 3CCEH 1S72H 3CCMH 4IOCJ 1KD1J 1VQ8H 1VQPH 1W2BH 1Q86J 1YHQH 3PIOJ 3J7ZM 3CMEH 4IO9J 3OW2H 3I56H 4WFNJ 3CCVH 1VQNH 3CCLH 2ZJRJ 5DM7J 3CPWH 5H1SO 3CCRH 1M90J 1N8RJ 3G6EH 3CCQH 2ZJPJ 4WFBJ 3CC4H 3CCSH 3DLLJ 3CD6H 5JVHJ 1VQLH 3CC7H 1VQ7H 1QVFH 5MLCO 1VQMH 1Q7YJ 5HL7J 1KQSH 1YITH 1Y69K 4UY8M 3CXCH 3CF5J 4WCEJ 1VQOH 2OTLH 2OTJH 3CCUH 1YI2H 3G4SH 1QVGH 1VQ4H 4U67J 4IOAJ 4WFAJ 3I55H 2QA4H 1VQ6H 3CMAH 5JVGJ 1JJ2H 1YIJH 1VQ9H 3CCJH 5AN9F 1NJIJ 5GADN 1WKIA 1YJWH 4WF9J 1Q81J 5GAHN 1M1KJ 3PIPJ 5GAGN 2QEXH 3CC2H 2PA2A 5GAEN 1K73J 3G71H 1KC8J
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1Q82 J;  1K8A J;  1VQ5 H;  1YJN H;  1K9M J;  1YJ9 H;  1VQK H;  5DM6 J;  2ZJQ J;  3CCE H;  1S72 H;  3CCM H;  4IOC J;  1KD1 J;  1VQ8 H;  1VQP H;  1W2B H;  1Q86 J;  1YHQ H;  3PIO J;  3J7Z M;  3CME H;  4IO9 J;  3OW2 H;  3I56 H;  4WFN J;  3CCV H;  1VQN H;  3CCL H;  2ZJR J;  5DM7 J;  3CPW H;  5H1S O;  3CCR H;  1M90 J;  1N8R J;  3G6E H;  3CCQ H;  2ZJP J;  4WFB J;  3CC4 H;  3CCS H;  3DLL J;  3CD6 H;  5JVH J;  1VQL H;  3CC7 H;  1VQ7 H;  1QVF H;  5MLC O;  1VQM H;  1Q7Y J;  5HL7 J;  1KQS H;  1YIT H;  1Y69 K;  4UY8 M;  3CXC H;  3CF5 J;  4WCE J;  1VQO H;  2OTL H;  2OTJ H;  3CCU H;  1YI2 H;  3G4S H;  1QVG H;  1VQ4 H;  4U67 J;  4IOA J;  4WFA J;  3I55 H;  2QA4 H;  1VQ6 H;  3CMA H;  5JVG J;  1JJ2 H;  1YIJ H;  1VQ9 H;  3CCJ H;  5AN9 F;  1NJI J;  5GAD N;  1WKI A;  1YJW H;  4WF9 J;  1Q81 J;  5GAH N;  1M1K J;  3PIP J;  5GAG N;  2QEX H;  3CC2 H;  2PA2 A;  5GAE N;  1K73 J;  3G71 H;  1KC8 J; 
#chains in the Genus database with same CATH topology
 1Q82 J;  4C7Z A;  5AYX A;  1YTE A;  3EUB 4;  1VDV A;  1K8A J;  1VQ5 H;  1YJN H;  3NRZ C;  4XR5 A;  1K9M J;  1YJ9 H;  1VQK H;  1FFV B;  5DM6 J;  2ZJQ J;  4C80 A;  5HUP A;  3CCE H;  2W55 B;  1S72 H;  3CCM H;  4IOC J;  1KD1 J;  2W3R B;  1VQ8 H;  3L4P A;  3B9J C;  4YYY A;  3WO1 A;  1VQP H;  1FIQ C;  1W2B H;  1Q86 J;  1QPN A;  3TQV A;  2B7P A;  1YTD A;  1YHQ H;  3WNZ A;  3PIO J;  1BRW A;  1N62 B;  3AM9 A;  4GA5 A;  4ZOH A;  1ZXI B;  3J7Z M;  3L0G A;  3CME H;  4IO9 J;  4US8 A;  3H5Q A;  3OW2 H;  3I56 H;  4WFN J;  1N5W B;  3CCV H;  2Q5W E;  3AMZ A;  1VQ6 H;  1NVJ A;  1VQN H;  5HUL A;  3RPF A;  3CCL H;  5DM7 J;  2ZJR J;  3CPW H;  1O4U A;  3NVZ C;  5H1S O;  3CCR H;  1M90 J;  2QIE A;  1X1O A;  1QPO A;  2WK5 A;  1N8R J;  3C2F A;  4US9 A;  3G6E H;  3CCQ H;  2ZJP J;  3C2R A;  4EAF A;  4WFB J;  1NVI E;  2WP4 A;  3FAH A;  3CC4 H;  3PAJ A;  3CCS H;  3DLL J;  2I1O A;  3CD6 H;  1AZY A;  5JVH J;  1VQL H;  4KWV A;  3AN1 A;  3ETR C;  3CC7 H;  1VLB A;  2JBM A;  1N60 B;  1OTP A;  2I14 A;  4YEK A;  2W3S B;  1VQ7 H;  4IOA J;  1QVF H;  1VQM H;  1Q7Y J;  5HL7 J;  1KQS H;  2TPT A;  1YIT H;  3SR6 C;  2QA4 H;  1Y69 K;  4UY8 M;  3CXC H;  3CF5 J;  1UOU A;  1JRP B;  5EP8 A;  3NVV C;  2WK6 A;  4WCE J;  3C2O A;  1VQO H;  2OTL H;  1RM6 A;  1FFU B;  3CCU H;  2OTJ H;  4GA4 A;  2DSJ A;  1YI2 H;  1FMA E;  3BII E;  2E3T A;  3G4S H;  1QVG H;  1KC8 J;  3NS1 C;  3GNN A;  1VQ4 H;  1N61 B;  3C2V A;  4GA6 A;  4AP8 A;  1N63 B;  1YTK A;  4U67 J;  4C7Y A;  1DGJ A;  1N5X A;  2B7N A;  1SIJ A;  1SB3 A;  4I9A A;  5AYZ A;  3VMM A;  4WFA J;  1FM0 E;  3I55 H;  3C2E A;  1FO4 A;  3FC4 A;  3CMA H;  3NVW C;  5JVG J;  1JJ2 H;  5AYY A;  1YIJ H;  1VQ9 H;  3CCJ H;  5AN9 F;  1QAP A;  1NJI J;  5GAD N;  5MPO C;  2J0F A;  1WKI A;  1YJW H;  4EAD A;  3NVY C;  4WF9 J;  4KWW A;  1Q81 J;  2B7Q A;  5GAH N;  1QPQ A;  4LHM A;  4X46 A;  1M1K J;  5EY3 A;  3G71 H;  1V97 A;  1WYG A;  1QPR A;  3PIP J;  5GAG N;  2W54 B;  5HUO A;  1JRO B;  2QEX H;  3CC2 H;  2PA2 A;  5GAE N;  4USA A;  2OMD A;  1K73 J;  5MLC O;  3WO0 A; 
#chains in the Genus database with same CATH homology
 1Q82 J;  1K8A J;  1VQ5 H;  1YJN H;  1K9M J;  1YJ9 H;  1VQK H;  5DM6 J;  2ZJQ J;  3CCE H;  1S72 H;  3CCM H;  4IOC J;  1KD1 J;  1VQ8 H;  1VQP H;  1W2B H;  1Q86 J;  1YHQ H;  3PIO J;  3J7Z M;  3CME H;  4IO9 J;  3OW2 H;  3I56 H;  4WFN J;  3CCV H;  1VQN H;  3CCL H;  2ZJR J;  5DM7 J;  3CPW H;  5H1S O;  3CCR H;  1M90 J;  1N8R J;  3G6E H;  3CCQ H;  2ZJP J;  4WFB J;  3CC4 H;  3CCS H;  3DLL J;  3CD6 H;  5JVH J;  1VQL H;  3CC7 H;  1VQ7 H;  1QVF H;  5MLC O;  1VQM H;  1Q7Y J;  5HL7 J;  1KQS H;  1YIT H;  1Y69 K;  4UY8 M;  3CXC H;  3CF5 J;  4WCE J;  1VQO H;  2OTL H;  2OTJ H;  3CCU H;  1YI2 H;  3G4S H;  1QVG H;  1VQ4 H;  4U67 J;  4IOA J;  4WFA J;  3I55 H;  2QA4 H;  1VQ6 H;  3CMA H;  5JVG J;  1JJ2 H;  1YIJ H;  1VQ9 H;  3CCJ H;  5AN9 F;  1NJI J;  5GAD N;  1WKI A;  1YJW H;  4WF9 J;  1Q81 J;  5GAH N;  1M1K J;  3PIP J;  5GAG N;  2QEX H;  3CC2 H;  2PA2 A;  5GAE N;  1K73 J;  3G71 H;  1KC8 J; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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