2OTLK

Girodazole bound to the large subunit of haloarcula marismortui
Total Genus 27
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
27
sequence length
132
structure length
132
Chain Sequence
MEALGADVTQGLEKGSLITCADNTGARELKVISVHGYSGTKNRLPKAGLGDKITVSVTKGTPEMRRQVLEAVVVRQRKPIRRPDGTRVKFEDNAAVIVDENEDPRGTELKGPIAREVAQRFGSVASAATMIV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome
molecule keywords 23S ribosomal RNA
publication title The Structures of Antibiotics Bound to the E Site Region of the 50 S Ribosomal Subunit of Haloarcula marismortui: 13-Deoxytedanolide and Girodazole.
pubmed doi rcsb
total genus 27
structure length 132
sequence length 132
ec nomenclature
pdb deposition date 2007-02-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
K PF00238 Ribosomal_L14 Ribosomal protein L14p/L23e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.150.20 Mainly Beta Beta Barrel Ribosomal Protein L14 Ribosomal protein L14 2otlK00
1WHIA 3CCLK 3CC2K 1QVGJ 1S72K 1Q86L 4V19O 1VQ8K 3G71K 1NJIL 1K9ML 4U67H 5JVGH 4WFNH 3CCQK 3CF5H 1YJ9K 3J7YL 1Q81L 1YI2K 3CCSK 2ZJRH 5GAHL 3J7ZK 3I56K 1KD1L 3CCRK 5AN9E 2QA4K 3CCMK 4WF9H 1JJ2J 1M90L 4WCEH 2OTJK 1VQKK 3CCVK 3CMEK 5GADL 5GAEL 3DLLH 1VQPK 1Q82L 3G4SK 1QVFJ 2OTLK 1K8AL 4WFAH 1VQ4K 1VQ5K 2ZJPH 1VQOK 5DM6H 3PIPH 1KQSJ 3CCJK 5DM7H 1YHQK 5HL7H 5H1SM 3CPWJ 4WFBH 4IOCH 5MLCM 5JVHH 1YJWK 3CXCJ 1KC8L 1M1KL 3CCUK 3CCEK 3PIOH 3CMAK 1W2BJ 1N8RL 1VQNK 3CC4K 3G6EK 4IOAH 1VQ9K 2QEXK 1VQMK 1YIJK 1K73L 5GAGL 1VQ6K 3I55K 3OW2J 4IO9H 1Q7YL 1YJNK 2ZJQH 4UY8K 1VQ7K 3CC7K 1VQLK 3CD6K 1YITK
chains in the Genus database with same CATH superfamily
1WHIA 3CCLK 3CC2K 1QVGJ 1S72K 1Q86L 4V19O 1VQ8K 3G71K 1NJIL 1K9ML 4U67H 5JVGH 4WFNH 3CCQK 3CF5H 1YJ9K 3J7YL 1Q81L 1YI2K 3CCSK 2ZJRH 5GAHL 3J7ZK 3I56K 1KD1L 3CCRK 5AN9E 2QA4K 3CCMK 4WF9H 1JJ2J 1M90L 4WCEH 2OTJK 1VQKK 3CCVK 3CMEK 5GADL 5GAEL 3DLLH 1VQPK 1Q82L 3G4SK 1QVFJ 2OTLK 1K8AL 4WFAH 1VQ4K 1VQ5K 2ZJPH 1VQOK 5DM6H 3PIPH 1KQSJ 3CCJK 5DM7H 1YHQK 5HL7H 5H1SM 3CPWJ 4WFBH 4IOCH 5MLCM 5JVHH 1YJWK 3CXCJ 1KC8L 1M1KL 3CCUK 3CCEK 3PIOH 3CMAK 1W2BJ 1N8RL 1VQNK 3CC4K 3G6EK 4IOAH 1VQ9K 2QEXK 1VQMK 1YIJK 1K73L 5GAGL 1VQ6K 3I55K 3OW2J 4IO9H 1Q7YL 1YJNK 2ZJQH 4UY8K 1VQ7K 3CC7K 1VQLK 3CD6K 1YITK
chains in the Genus database with same CATH topology
1WHIA 3CCLK 3CC2K 1QVGJ 1S72K 1Q86L 4V19O 1VQ8K 3G71K 1NJIL 1K9ML 4U67H 5JVGH 4WFNH 3CCQK 3CF5H 1YJ9K 3J7YL 1Q81L 1YI2K 3CCSK 2ZJRH 5GAHL 3J7ZK 3I56K 1KD1L 3CCRK 5AN9E 2QA4K 3CCMK 4WF9H 1JJ2J 1M90L 4WCEH 2OTJK 1VQKK 3CCVK 3CMEK 5GADL 5GAEL 3DLLH 1VQPK 1Q82L 3G4SK 1QVFJ 2OTLK 1K8AL 4WFAH 1VQ4K 1VQ5K 2ZJPH 1VQOK 5DM6H 3PIPH 1KQSJ 3CCJK 5DM7H 1YHQK 5HL7H 5H1SM 3CPWJ 4WFBH 4IOCH 5MLCM 5JVHH 1YJWK 3CXCJ 1KC8L 1M1KL 3CCUK 3CCEK 3PIOH 3CMAK 1W2BJ 1N8RL 1VQNK 3CC4K 3G6EK 4IOAH 1VQ9K 2QEXK 1VQMK 1YIJK 1K73L 5GAGL 1VQ6K 3I55K 3OW2J 4IO9H 1Q7YL 1YJNK 2ZJQH 4UY8K 1VQ7K 3CC7K 1VQLK 3CD6K 1YITK
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1WHI A;  3CCL K;  3CC2 K;  1QVG J;  1S72 K;  1Q86 L;  4V19 O;  1VQ8 K;  3G71 K;  1NJI L;  1K9M L;  4U67 H;  5JVG H;  4WFN H;  3CCQ K;  3CF5 H;  1YJ9 K;  3J7Y L;  1Q81 L;  1YI2 K;  3CCS K;  2ZJR H;  5GAH L;  3J7Z K;  3I56 K;  1KD1 L;  3CCR K;  5AN9 E;  2QA4 K;  3CCM K;  4WF9 H;  1JJ2 J;  1M90 L;  4WCE H;  2OTJ K;  1VQK K;  3CCV K;  3CME K;  5GAD L;  5GAE L;  3DLL H;  1VQP K;  1Q82 L;  3G4S K;  1QVF J;  2OTL K;  1K8A L;  4WFA H;  1VQ4 K;  1VQ5 K;  2ZJP H;  1VQO K;  5DM6 H;  3PIP H;  1KQS J;  3CCJ K;  5DM7 H;  1YHQ K;  5HL7 H;  5H1S M;  3CPW J;  4WFB H;  4IOC H;  5MLC M;  5JVH H;  1YJW K;  3CXC J;  1KC8 L;  1M1K L;  3CCU K;  3CCE K;  3PIO H;  3CMA K;  1W2B J;  1N8R L;  1VQN K;  3CC4 K;  3G6E K;  4IOA H;  1VQ9 K;  2QEX K;  1VQM K;  1YIJ K;  1K73 L;  5GAG L;  1VQ6 K;  3I55 K;  3OW2 J;  4IO9 H;  1Q7Y L;  1YJN K;  2ZJQ H;  4UY8 K;  1VQ7 K;  3CC7 K;  1VQL K;  3CD6 K;  1YIT K; 
#chains in the Genus database with same CATH topology
 1WHI A;  3CCL K;  3CC2 K;  1QVG J;  1S72 K;  1Q86 L;  4V19 O;  1VQ8 K;  3G71 K;  1NJI L;  1K9M L;  4U67 H;  5JVG H;  4WFN H;  3CCQ K;  3CF5 H;  1YJ9 K;  3J7Y L;  1Q81 L;  1YI2 K;  3CCS K;  2ZJR H;  5GAH L;  3J7Z K;  3I56 K;  1KD1 L;  3CCR K;  5AN9 E;  2QA4 K;  3CCM K;  4WF9 H;  1JJ2 J;  1M90 L;  4WCE H;  2OTJ K;  1VQK K;  3CCV K;  3CME K;  5GAD L;  5GAE L;  3DLL H;  1VQP K;  1Q82 L;  3G4S K;  1QVF J;  2OTL K;  1K8A L;  4WFA H;  1VQ4 K;  1VQ5 K;  2ZJP H;  1VQO K;  5DM6 H;  3PIP H;  1KQS J;  3CCJ K;  5DM7 H;  1YHQ K;  5HL7 H;  5H1S M;  3CPW J;  4WFB H;  4IOC H;  5MLC M;  5JVH H;  1YJW K;  3CXC J;  1KC8 L;  1M1K L;  3CCU K;  3CCE K;  3PIO H;  3CMA K;  1W2B J;  1N8R L;  1VQN K;  3CC4 K;  3G6E K;  4IOA H;  1VQ9 K;  2QEX K;  1VQM K;  1YIJ K;  1K73 L;  5GAG L;  1VQ6 K;  3I55 K;  3OW2 J;  4IO9 H;  1Q7Y L;  1YJN K;  2ZJQ H;  4UY8 K;  1VQ7 K;  3CC7 K;  1VQL K;  3CD6 K;  1YIT K; 
#chains in the Genus database with same CATH homology
 1WHI A;  3CCL K;  3CC2 K;  1QVG J;  1S72 K;  1Q86 L;  4V19 O;  1VQ8 K;  3G71 K;  1NJI L;  1K9M L;  4U67 H;  5JVG H;  4WFN H;  3CCQ K;  3CF5 H;  1YJ9 K;  3J7Y L;  1Q81 L;  1YI2 K;  3CCS K;  2ZJR H;  5GAH L;  3J7Z K;  3I56 K;  1KD1 L;  3CCR K;  5AN9 E;  2QA4 K;  3CCM K;  4WF9 H;  1JJ2 J;  1M90 L;  4WCE H;  2OTJ K;  1VQK K;  3CCV K;  3CME K;  5GAD L;  5GAE L;  3DLL H;  1VQP K;  1Q82 L;  3G4S K;  1QVF J;  2OTL K;  1K8A L;  4WFA H;  1VQ4 K;  1VQ5 K;  2ZJP H;  1VQO K;  5DM6 H;  3PIP H;  1KQS J;  3CCJ K;  5DM7 H;  1YHQ K;  5HL7 H;  5H1S M;  3CPW J;  4WFB H;  4IOC H;  5MLC M;  5JVH H;  1YJW K;  3CXC J;  1KC8 L;  1M1K L;  3CCU K;  3CCE K;  3PIO H;  3CMA K;  1W2B J;  1N8R L;  1VQN K;  3CC4 K;  3G6E K;  4IOA H;  1VQ9 K;  2QEX K;  1VQM K;  1YIJ K;  1K73 L;  5GAG L;  1VQ6 K;  3I55 K;  3OW2 J;  4IO9 H;  1Q7Y L;  1YJN K;  2ZJQ H;  4UY8 K;  1VQ7 K;  3CC7 K;  1VQL K;  3CD6 K;  1YIT K; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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