2OTLK

Girodazole bound to the large subunit of haloarcula marismortui
Total Genus 27
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
27
sequence length
132
structure length
132
Chain Sequence
MEALGADVTQGLEKGSLITCADNTGARELKVISVHGYSGTKNRLPKAGLGDKITVSVTKGTPEMRRQVLEAVVVRQRKPIRRPDGTRVKFEDNAAVIVDENEDPRGTELKGPIAREVAQRFGSVASAATMIV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome
molecule keywords 23S ribosomal RNA
publication title The Structures of Antibiotics Bound to the E Site Region of the 50 S Ribosomal Subunit of Haloarcula marismortui: 13-Deoxytedanolide and Girodazole.
pubmed doi rcsb
total genus 27
structure length 132
sequence length 132
ec nomenclature
pdb deposition date 2007-02-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
K PF00238 Ribosomal_L14 Ribosomal protein L14p/L23e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.150.20 Mainly Beta Beta Barrel Ribosomal Protein L14 Ribosomal protein L14 2otlK00
5GAHL 3CMEK 1WHIA 3PIOH 1VQ9K 3CCLK 1VQPK 1Q82L 4V19O 1YIJK 5GAGL 1QVFJ 4WF9H 3CXCJ 1Q7YL 3CD6K 3CCEK 1M90L 5AN9E 1YJ9K 5JVGH 5H1SM 4WFBH 1KQSJ 1VQOK 2OTLK 2QEXK 5MLCM 3CMAK 4WFAH 3CC7K 3CCVK 5GADL 1KC8L 1YHQK 3J7ZK 1VQNK 2ZJQH 3DLLH 3CCSK 1NJIL 5JVHH 1VQLK 3CCRK 4IOAH 3OW2J 2OTJK 4U67H 5DM7H 2QA4K 3CCMK 2ZJRH 1JJ2J 1K73L 5GAEL 4WCEH 1VQ4K 3CC2K 1YITK 1K9ML 1QVGJ 1YJNK 1VQ6K 1M1KL 3G71K 1K8AL 5DM6H 3I56K 4WFNH 1KD1L 3G6EK 1VQ7K 1VQKK 1Q86L 4IO9H 4IOCH 3CPWJ 3CCJK 3I55K 1VQ8K 2ZJPH 3CCQK 3CC4K 3G4SK 1W2BJ 1N8RL 3J7YL 3CCUK 1VQ5K 5HL7H 1YJWK 1Q81L 1VQMK 3CF5H 1S72K 1YI2K 4UY8K 3PIPH
chains in the Genus database with same CATH superfamily
5GAHL 3CMEK 1WHIA 3PIOH 1VQ9K 3CCLK 1VQPK 1Q82L 4V19O 1YIJK 5GAGL 1QVFJ 4WF9H 3CXCJ 1Q7YL 3CD6K 3CCEK 1M90L 5AN9E 1YJ9K 5JVGH 5H1SM 4WFBH 1KQSJ 1VQOK 2OTLK 2QEXK 5MLCM 3CMAK 4WFAH 3CC7K 3CCVK 5GADL 1KC8L 1YHQK 3J7ZK 1VQNK 2ZJQH 3DLLH 3CCSK 1NJIL 5JVHH 1VQLK 3CCRK 4IOAH 3OW2J 2OTJK 4U67H 5DM7H 2QA4K 3CCMK 2ZJRH 1JJ2J 1K73L 5GAEL 4WCEH 1VQ4K 3CC2K 1YITK 1K9ML 1QVGJ 1YJNK 1VQ6K 1M1KL 3G71K 1K8AL 5DM6H 3I56K 4WFNH 1KD1L 3G6EK 1VQ7K 1VQKK 1Q86L 4IO9H 4IOCH 3CPWJ 3CCJK 3I55K 1VQ8K 2ZJPH 3CCQK 3CC4K 3G4SK 1W2BJ 1N8RL 3J7YL 3CCUK 1VQ5K 5HL7H 1YJWK 1Q81L 1VQMK 3CF5H 1S72K 1YI2K 4UY8K 3PIPH
chains in the Genus database with same CATH topology
5GAHL 3CMEK 1WHIA 3PIOH 1VQ9K 3CCLK 1VQPK 1Q82L 4V19O 1YIJK 5GAGL 1QVFJ 4WF9H 3CXCJ 1Q7YL 3CD6K 3CCEK 1M90L 5AN9E 1YJ9K 5JVGH 5H1SM 4WFBH 1KQSJ 1VQOK 2OTLK 2QEXK 5MLCM 3CMAK 4WFAH 3CC7K 3CCVK 5GADL 1KC8L 1YHQK 3J7ZK 1VQNK 2ZJQH 3DLLH 3CCSK 1NJIL 5JVHH 1VQLK 3CCRK 4IOAH 3OW2J 2OTJK 4U67H 5DM7H 2QA4K 3CCMK 2ZJRH 1JJ2J 1K73L 5GAEL 4WCEH 1VQ4K 3CC2K 1YITK 1K9ML 1QVGJ 1YJNK 1VQ6K 1M1KL 3G71K 1K8AL 5DM6H 3I56K 4WFNH 1KD1L 3G6EK 1VQ7K 1VQKK 1Q86L 4IO9H 4IOCH 3CPWJ 3CCJK 3I55K 1VQ8K 2ZJPH 3CCQK 3CC4K 3G4SK 1W2BJ 1N8RL 3J7YL 3CCUK 1VQ5K 5HL7H 1YJWK 1Q81L 1VQMK 3CF5H 1S72K 1YI2K 4UY8K 3PIPH
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5GAH L;  3CME K;  1WHI A;  3PIO H;  1VQ9 K;  3CCL K;  1VQP K;  1Q82 L;  4V19 O;  1YIJ K;  5GAG L;  1QVF J;  4WF9 H;  3CXC J;  1Q7Y L;  3CD6 K;  3CCE K;  1M90 L;  5AN9 E;  1YJ9 K;  5JVG H;  5H1S M;  4WFB H;  1KQS J;  1VQO K;  2OTL K;  2QEX K;  5MLC M;  3CMA K;  4WFA H;  3CC7 K;  3CCV K;  5GAD L;  1KC8 L;  1YHQ K;  3J7Z K;  1VQN K;  2ZJQ H;  3DLL H;  3CCS K;  1NJI L;  5JVH H;  1VQL K;  3CCR K;  4IOA H;  3OW2 J;  2OTJ K;  4U67 H;  5DM7 H;  2QA4 K;  3CCM K;  2ZJR H;  1JJ2 J;  1K73 L;  5GAE L;  4WCE H;  1VQ4 K;  3CC2 K;  1YIT K;  1K9M L;  1QVG J;  1YJN K;  1VQ6 K;  1M1K L;  3G71 K;  1K8A L;  5DM6 H;  3I56 K;  4WFN H;  1KD1 L;  3G6E K;  1VQ7 K;  1VQK K;  1Q86 L;  4IO9 H;  4IOC H;  3CPW J;  3CCJ K;  3I55 K;  1VQ8 K;  2ZJP H;  3CCQ K;  3CC4 K;  3G4S K;  1W2B J;  1N8R L;  3J7Y L;  3CCU K;  1VQ5 K;  5HL7 H;  1YJW K;  1Q81 L;  1VQM K;  3CF5 H;  1S72 K;  1YI2 K;  4UY8 K;  3PIP H; 
#chains in the Genus database with same CATH topology
 5GAH L;  3CME K;  1WHI A;  3PIO H;  1VQ9 K;  3CCL K;  1VQP K;  1Q82 L;  4V19 O;  1YIJ K;  5GAG L;  1QVF J;  4WF9 H;  3CXC J;  1Q7Y L;  3CD6 K;  3CCE K;  1M90 L;  5AN9 E;  1YJ9 K;  5JVG H;  5H1S M;  4WFB H;  1KQS J;  1VQO K;  2OTL K;  2QEX K;  5MLC M;  3CMA K;  4WFA H;  3CC7 K;  3CCV K;  5GAD L;  1KC8 L;  1YHQ K;  3J7Z K;  1VQN K;  2ZJQ H;  3DLL H;  3CCS K;  1NJI L;  5JVH H;  1VQL K;  3CCR K;  4IOA H;  3OW2 J;  2OTJ K;  4U67 H;  5DM7 H;  2QA4 K;  3CCM K;  2ZJR H;  1JJ2 J;  1K73 L;  5GAE L;  4WCE H;  1VQ4 K;  3CC2 K;  1YIT K;  1K9M L;  1QVG J;  1YJN K;  1VQ6 K;  1M1K L;  3G71 K;  1K8A L;  5DM6 H;  3I56 K;  4WFN H;  1KD1 L;  3G6E K;  1VQ7 K;  1VQK K;  1Q86 L;  4IO9 H;  4IOC H;  3CPW J;  3CCJ K;  3I55 K;  1VQ8 K;  2ZJP H;  3CCQ K;  3CC4 K;  3G4S K;  1W2B J;  1N8R L;  3J7Y L;  3CCU K;  1VQ5 K;  5HL7 H;  1YJW K;  1Q81 L;  1VQM K;  3CF5 H;  1S72 K;  1YI2 K;  4UY8 K;  3PIP H; 
#chains in the Genus database with same CATH homology
 5GAH L;  3CME K;  1WHI A;  3PIO H;  1VQ9 K;  3CCL K;  1VQP K;  1Q82 L;  4V19 O;  1YIJ K;  5GAG L;  1QVF J;  4WF9 H;  3CXC J;  1Q7Y L;  3CD6 K;  3CCE K;  1M90 L;  5AN9 E;  1YJ9 K;  5JVG H;  5H1S M;  4WFB H;  1KQS J;  1VQO K;  2OTL K;  2QEX K;  5MLC M;  3CMA K;  4WFA H;  3CC7 K;  3CCV K;  5GAD L;  1KC8 L;  1YHQ K;  3J7Z K;  1VQN K;  2ZJQ H;  3DLL H;  3CCS K;  1NJI L;  5JVH H;  1VQL K;  3CCR K;  4IOA H;  3OW2 J;  2OTJ K;  4U67 H;  5DM7 H;  2QA4 K;  3CCM K;  2ZJR H;  1JJ2 J;  1K73 L;  5GAE L;  4WCE H;  1VQ4 K;  3CC2 K;  1YIT K;  1K9M L;  1QVG J;  1YJN K;  1VQ6 K;  1M1K L;  3G71 K;  1K8A L;  5DM6 H;  3I56 K;  4WFN H;  1KD1 L;  3G6E K;  1VQ7 K;  1VQK K;  1Q86 L;  4IO9 H;  4IOC H;  3CPW J;  3CCJ K;  3I55 K;  1VQ8 K;  2ZJP H;  3CCQ K;  3CC4 K;  3G4S K;  1W2B J;  1N8R L;  3J7Y L;  3CCU K;  1VQ5 K;  5HL7 H;  1YJW K;  1Q81 L;  1VQM K;  3CF5 H;  1S72 K;  1YI2 K;  4UY8 K;  3PIP H; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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