2OTLU

Girodazole bound to the large subunit of haloarcula marismortui
Total Genus 10
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
10
sequence length
53
structure length
53
Chain Sequence
RECDYCGTDIEPGTGTMFVHKDGATTHFCSSKCENNADLGREARNLEWTDTAR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome
molecule keywords 23S ribosomal RNA
publication title The Structures of Antibiotics Bound to the E Site Region of the 50 S Ribosomal Subunit of Haloarcula marismortui: 13-Deoxytedanolide and Girodazole.
pubmed doi rcsb
total genus 10
structure length 53
sequence length 53
ec nomenclature
pdb deposition date 2007-02-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
U PF01246 Ribosomal_L24e Ribosomal protein L24e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.170.20 Mainly Beta Roll Ribosomal Protein L24e; Chain: T; Ribosomal Protein L24e; Chain: T; 2otlU00
1YHQU 2OTLU 1VQ7U 1YITU 3CCSU 1Q86V 3CCRU 1KD1V 3CCEU 1VQ4U 2OTJU 3CC2U 1QVFT 1VQ9U 1VQMU 3CCUU 1VQKU 3I56U 2QEXU 1JJ2T 3CMAU 1VQ5U 1YJNU 1NJIV 1VQNU 3OW2T 1VQLU 3I55U 3CCJU 1K73V 1Q81V 1N8RV 3CC7U 1K9MV 3CCVU 3CD6U 3G71U 1Q7YV 1M1KV 3CCMU 3CCLU 3CCQU 1Q82V 1VQOU 1VQ8U 1QVGT 1KC8V 3CC4U 2QA4U 1M90V 1YIJU 1S72U 3CMEU 1YI2U 1KQST 1YJ9U 1W2BT 5AN9G 1YJWU 3CXCT 1VQ6U 3G4SU 1K8AV 3CPWT 1VQPU 3G6EU
chains in the Genus database with same CATH superfamily
1YHQU 5MLCY 3CCUU 2QEZA 2JZ6A 3CMAU 1YJNU 3I55U 5DM6U 3CCLU 3CCQU 1Q82V 3CXCT 1K8AV 3CPWT 3ABOA 1VQPU 3CCEU 1VQ4U 2QEXU 1VQ5U 1VQNU 1VQLU 3CD6U 3CCMU 1QVGT 2QA4U 3CMEU 1YI2U 1KQST 1YJWU 3G4SU 3J7ZX 1Q86V 5H1SY 2OTLU 3CCSU 3CCRU 1VQMU 3I56U 3OW2T 3ABRA 1N8RV 3CC7U 3G71U 1Q7YV 1M1KV 3ANYA 3CC4U 1M90V 1YIJU 3ABQA 1JJDA 3AO0A 3ABSA 3G6EU 1VQ7U 1YITU 1KD1V 2OTJU 3CC2U 1QVFT 1VQ9U 1VQKU 1JJ2T 1NJIV 3CCJU 1K73V 1Q81V 1K9MV 3CCVU 1VQOU 1VQ8U 1KC8V 1S72U 1YJ9U 1W2BT 5AN9G 4UY8X 1VQ6U
chains in the Genus database with same CATH topology
1YHQU 2OTLU 1VQ7U 1YITU 3CCSU 1Q86V 3CCRU 1KD1V 3CCEU 1VQ4U 2OTJU 3CC2U 1QVFT 1VQ9U 1VQMU 3CCUU 1VQKU 3I56U 2QEXU 1JJ2T 3CMAU 1VQ5U 1YJNU 1NJIV 1VQNU 3OW2T 1VQLU 3I55U 3CCJU 1K73V 1Q81V 1N8RV 3CC7U 1K9MV 3CCVU 3CD6U 3G71U 1Q7YV 1M1KV 3CCMU 3CCLU 3CCQU 1Q82V 1VQOU 1VQ8U 1QVGT 1KC8V 3CC4U 2QA4U 1M90V 1YIJU 1S72U 3CMEU 1YI2U 1KQST 1JJDA 1YJ9U 1W2BT 5AN9G 1YJWU 3CXCT 1VQ6U 3G4SU 1K8AV 3CPWT 1VQPU 3G6EU
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1YHQ U;  2OTL U;  1VQ7 U;  1YIT U;  3CCS U;  1Q86 V;  3CCR U;  1KD1 V;  3CCE U;  1VQ4 U;  2OTJ U;  3CC2 U;  1QVF T;  1VQ9 U;  1VQM U;  3CCU U;  1VQK U;  3I56 U;  2QEX U;  1JJ2 T;  3CMA U;  1VQ5 U;  1YJN U;  1NJI V;  1VQN U;  3OW2 T;  1VQL U;  3I55 U;  3CCJ U;  1K73 V;  1Q81 V;  1N8R V;  3CC7 U;  1K9M V;  3CCV U;  3CD6 U;  3G71 U;  1Q7Y V;  1M1K V;  3CCM U;  3CCL U;  3CCQ U;  1Q82 V;  1VQO U;  1VQ8 U;  1QVG T;  1KC8 V;  3CC4 U;  2QA4 U;  1M90 V;  1YIJ U;  1S72 U;  3CME U;  1YI2 U;  1KQS T;  1YJ9 U;  1W2B T;  5AN9 G;  1YJW U;  3CXC T;  1VQ6 U;  3G4S U;  1K8A V;  3CPW T;  1VQP U;  3G6E U; 
#chains in the Genus database with same CATH topology
 1YHQ U;  5MLC Y;  3CCU U;  2QEZ A;  2JZ6 A;  3CMA U;  1YJN U;  3I55 U;  5DM6 U;  3CCL U;  3CCQ U;  1Q82 V;  3CXC T;  1K8A V;  3CPW T;  3ABO A;  1VQP U;  3CCE U;  1VQ4 U;  2QEX U;  1VQ5 U;  1VQN U;  1VQL U;  3CD6 U;  3CCM U;  1QVG T;  2QA4 U;  3CME U;  1YI2 U;  1KQS T;  1YJW U;  3G4S U;  3J7Z X;  1Q86 V;  5H1S Y;  2OTL U;  3CCS U;  3CCR U;  1VQM U;  3I56 U;  3OW2 T;  3ABR A;  1N8R V;  3CC7 U;  3G71 U;  1Q7Y V;  1M1K V;  3ANY A;  3CC4 U;  1M90 V;  1YIJ U;  3ABQ A;  1JJD A;  3AO0 A;  3ABS A;  3G6E U;  1VQ7 U;  1YIT U;  1KD1 V;  2OTJ U;  3CC2 U;  1QVF T;  1VQ9 U;  1VQK U;  1JJ2 T;  1NJI V;  3CCJ U;  1K73 V;  1Q81 V;  1K9M V;  3CCV U;  1VQO U;  1VQ8 U;  1KC8 V;  1S72 U;  1YJ9 U;  1W2B T;  5AN9 G;  4UY8 X;  1VQ6 U; 
#chains in the Genus database with same CATH homology
 1YHQ U;  2OTL U;  1VQ7 U;  1YIT U;  3CCS U;  1Q86 V;  3CCR U;  1KD1 V;  3CCE U;  1VQ4 U;  2OTJ U;  3CC2 U;  1QVF T;  1VQ9 U;  1VQM U;  3CCU U;  1VQK U;  3I56 U;  2QEX U;  1JJ2 T;  3CMA U;  1VQ5 U;  1YJN U;  1NJI V;  1VQN U;  3OW2 T;  1VQL U;  3I55 U;  3CCJ U;  1K73 V;  1Q81 V;  1N8R V;  3CC7 U;  1K9M V;  3CCV U;  3CD6 U;  3G71 U;  1Q7Y V;  1M1K V;  3CCM U;  3CCL U;  3CCQ U;  1Q82 V;  1VQO U;  1VQ8 U;  1QVG T;  1KC8 V;  3CC4 U;  2QA4 U;  1M90 V;  1YIJ U;  1S72 U;  3CME U;  1YI2 U;  1KQS T;  1JJD A;  1YJ9 U;  1W2B T;  5AN9 G;  1YJW U;  3CXC T;  1VQ6 U;  3G4S U;  1K8A V;  3CPW T;  1VQP U;  3G6E U; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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