2OTLW

Girodazole bound to the large subunit of haloarcula marismortui
Total Genus 48
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
48
sequence length
154
structure length
154
Chain Sequence
MHALVQLRGEVNMHTDIQDTLEMLNIHHVNHCTLVPETDAYRGMVAKVNDFVAFGEPSQETLETVLATRAEPLEGDADVDDEWVAEHTDYDDISGLAFALLSEETTLREQGLSPTLRLHPPRGGHDGVKHPVKEGGQLGKHDTEGIDDLLEAMR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome
molecule keywords 23S ribosomal RNA
publication title The Structures of Antibiotics Bound to the E Site Region of the 50 S Ribosomal Subunit of Haloarcula marismortui: 13-Deoxytedanolide and Girodazole.
pubmed doi rcsb
total genus 48
structure length 154
sequence length 154
ec nomenclature
pdb deposition date 2007-02-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
W PF00327 Ribosomal_L30 Ribosomal protein L30p/L7e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.15.30 Mainly Alpha Orthogonal Bundle 3-methyladenine DNA Glycosylase II; Chain A, domain 3 3-methyladenine DNA Glycosylase II; Chain A, domain 3 2otlW02
3.30.1390.20 Alpha Beta 2-Layer Sandwich Ribosomal Protein L30; Chain: A, Ribosomal protein L30, ferredoxin-like fold domain 2otlW01
3CC2W 1YJ9W 3G4SW 3J7ZZ 4IOAW 3CXCV 1S72W 1VQLW 5DM6W 3G71W 3CCVW 1VQ5W 5HL7W 3CCQW 1W2BV 5JVGW 4IO9W 1VQMW 1QVGV 3CMAW 3CCJW 1Q7YX 4WF9W 4UY8Z 1VQKW 1Q82X 3CMEW 1VQ6W 1NJIX 1QVFV 4WCEW 5GAHa 5GAEa 5DM7W 1K9MX 2QA4W 1YITW 2ZJPW 2OTLW 3CD6W 1YIJW 3OW2V 3CC7W 1KC8X 1VQ4W 1Q81X 1KQSV 1M90X 4U67W 3CCMW 3PIOW 4WFBW 2ZJQW 1VQPW 1YHQW 1VQ8W 4WFAW 1KD1X 3CF5W 2OTJW 3CCEW 4IOCW 3CCSW 1VQNW 5GADa 3CCRW 1M1KX 3CPWV 5GAGa 3CCUW 1YJNW 4WFNW 1VQ9W 2ZJRW 3DLLW 1Q86X 3CCLW 1K73X 1JJ2V 1K8AX 1VQ7W 5JVHW 1VQOW 1YJWW 1N8RX 3PIPW 3CC4W 1YI2W 3I55W 3G6EW 3I56W 2QEXW 1BXYA
chains in the Genus database with same CATH superfamily
3CC2W 1YJ9W 3GW1A 3G4SW 5M1AA 3ZG0A 4BL3A 3J7ZZ 4IOAW 3CXCV 3G1BA 1S72W 1VQLW 5DM6W 3G71W 4YKAA 1MWRA 3CCVW 1VQ5W 5HL7W 3CCQW 1W2BV 5JVGW 1CTFA 4IO9W 1VQMW 1QVGV 3O2HA 4YJXA 4CJNA 3CMAW 3CCJW 1MBXC 1Q7YX 1LZWA 1VQQA 5M19A 4WF9W 1DD4A 4UY8Z 1VQKW 4DKIA 1Q82X 3CMEW 1VQ6W 1NJIX 1QVFV 4WCEW 3G3PA 3O2BA 5GAHa 5GAEa 5DM7W 1K9MX 4C1NA 2QA4W 5GW7A 1YITW 1RQSA 3O2OA 1MG9A 3W7SA 2ZJPW 2OTLW 3CD6W 1YIJW 3OW2V 3CC7W 1KC8X 1VQ4W 1MWUA 1Q81X 1DD3A 1KQSV 1M90X 3GQ0A 3GQ1A 1RQUA 1MBUC 4U67W 3CCMW 3O1FB 3PIOW 2W9RA 4WFBW 2ZJQW 2WA9A 1VQPW 1YHQW 1VQ8W 2WA8A 4WFAW 1KD1X 3CF5W 2OTJW 1MBVB 3O1FA 3CCEW 4IOCW 3CCSW 1VQNW 3W7WA 5GADa 3CCRW 1R6QC 1M1KX 3CPWV 5GAGa 4YJMA 3CCUW 5M18A 1R6OC 3W7TA 3ZG5A 5CA3A 1YJNW 4WFNW 1VQ9W 2ZJRW 3DLLW 1Q86X 3CCLW 1K73X 1JJ2V 1K8AX 3G19A 1VQ7W 5JVHW 1VQOW 1YJWW 3W7UA 1N8RX 1MWSA 1RQVA 3PIPW 3CC4W 1YI2W 1MWTA 3W7XA 3ZFZA 4BL2A 3I55W 3G6EW 3D3IA 3DNJA 3I56W 2QEXW 4CPKA 1BXYA
chains in the Genus database with same CATH topology
3CC2W 1YJ9W 3G4SW 3J7ZZ 4IOAW 3CXCV 1S72W 1VQLW 5DM6W 3G71W 3CCVW 1VQ5W 5HL7W 3CCQW 1W2BV 5JVGW 4IO9W 1VQMW 1QVGV 3CMAW 3CCJW 1Q7YX 4WF9W 4UY8Z 1VQKW 1Q82X 3CMEW 1VQ6W 1NJIX 1QVFV 4WCEW 5GAHa 5GAEa 5DM7W 1K9MX 4C1NA 2QA4W 1YITW 2ZJPW 2OTLW 3CD6W 1YIJW 3OW2V 3CC7W 1KC8X 1VQ4W 1Q81X 1KQSV 1M90X 4U67W 3CCMW 3PIOW 4WFBW 2ZJQW 1VQPW 1YHQW 1VQ8W 4WFAW 1KD1X 3CF5W 2OTJW 3CCEW 4IOCW 3CCSW 1VQNW 5GADa 3CCRW 1M1KX 3CPWV 5GAGa 3CCUW 1YJNW 4WFNW 1VQ9W 2ZJRW 3DLLW 1Q86X 3CCLW 1K73X 1JJ2V 1K8AX 1VQ7W 5JVHW 1VQOW 1YJWW 1N8RX 3PIPW 3CC4W 1YI2W 3I55W 3G6EW 3I56W 2QEXW 1BXYA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3CC2 W;  1YJ9 W;  3G4S W;  3J7Z Z;  4IOA W;  3CXC V;  1S72 W;  1VQL W;  5DM6 W;  3G71 W;  3CCV W;  1VQ5 W;  5HL7 W;  3CCQ W;  1W2B V;  5JVG W;  4IO9 W;  1VQM W;  1QVG V;  3CMA W;  3CCJ W;  1Q7Y X;  4WF9 W;  4UY8 Z;  1VQK W;  1Q82 X;  3CME W;  1VQ6 W;  1NJI X;  1QVF V;  4WCE W;  5GAH a;  5GAE a;  5DM7 W;  1K9M X;  2QA4 W;  1YIT W;  2ZJP W;  2OTL W;  3CD6 W;  1YIJ W;  3OW2 V;  3CC7 W;  1KC8 X;  1VQ4 W;  1Q81 X;  1KQS V;  1M90 X;  4U67 W;  3CCM W;  3PIO W;  4WFB W;  2ZJQ W;  1VQP W;  1YHQ W;  1VQ8 W;  4WFA W;  1KD1 X;  3CF5 W;  2OTJ W;  3CCE W;  4IOC W;  3CCS W;  1VQN W;  5GAD a;  3CCR W;  1M1K X;  3CPW V;  5GAG a;  3CCU W;  1YJN W;  4WFN W;  1VQ9 W;  2ZJR W;  3DLL W;  1Q86 X;  3CCL W;  1K73 X;  1JJ2 V;  1K8A X;  1VQ7 W;  5JVH W;  1VQO W;  1YJW W;  1N8R X;  3PIP W;  3CC4 W;  1YI2 W;  3I55 W;  3G6E W;  3I56 W;  2QEX W;  1BXY A; 
#chains in the Genus database with same CATH topology
 3CC2 W;  1YJ9 W;  3GW1 A;  3G4S W;  5M1A A;  3ZG0 A;  4BL3 A;  3J7Z Z;  4IOA W;  3CXC V;  3G1B A;  1S72 W;  1VQL W;  5DM6 W;  3G71 W;  4YKA A;  1MWR A;  3CCV W;  1VQ5 W;  5HL7 W;  3CCQ W;  1W2B V;  5JVG W;  1CTF A;  4IO9 W;  1VQM W;  1QVG V;  3O2H A;  4YJX A;  4CJN A;  3CMA W;  3CCJ W;  1MBX C;  1Q7Y X;  1LZW A;  1VQQ A;  5M19 A;  4WF9 W;  1DD4 A;  4UY8 Z;  1VQK W;  4DKI A;  1Q82 X;  3CME W;  1VQ6 W;  1NJI X;  1QVF V;  4WCE W;  3G3P A;  3O2B A;  5GAH a;  5GAE a;  5DM7 W;  1K9M X;  4C1N A;  2QA4 W;  5GW7 A;  1YIT W;  1RQS A;  3O2O A;  1MG9 A;  3W7S A;  2ZJP W;  2OTL W;  3CD6 W;  1YIJ W;  3OW2 V;  3CC7 W;  1KC8 X;  1VQ4 W;  1MWU A;  1Q81 X;  1DD3 A;  1KQS V;  1M90 X;  3GQ0 A;  3GQ1 A;  1RQU A;  1MBU C;  4U67 W;  3CCM W;  3O1F B;  3PIO W;  2W9R A;  4WFB W;  2ZJQ W;  2WA9 A;  1VQP W;  1YHQ W;  1VQ8 W;  2WA8 A;  4WFA W;  1KD1 X;  3CF5 W;  2OTJ W;  1MBV B;  3O1F A;  3CCE W;  4IOC W;  3CCS W;  1VQN W;  3W7W A;  5GAD a;  3CCR W;  1R6Q C;  1M1K X;  3CPW V;  5GAG a;  4YJM A;  3CCU W;  5M18 A;  1R6O C;  3W7T A;  3ZG5 A;  5CA3 A;  1YJN W;  4WFN W;  1VQ9 W;  2ZJR W;  3DLL W;  1Q86 X;  3CCL W;  1K73 X;  1JJ2 V;  1K8A X;  3G19 A;  1VQ7 W;  5JVH W;  1VQO W;  1YJW W;  3W7U A;  1N8R X;  1MWS A;  1RQV A;  3PIP W;  3CC4 W;  1YI2 W;  1MWT A;  3W7X A;  3ZFZ A;  4BL2 A;  3I55 W;  3G6E W;  3D3I A;  3DNJ A;  3I56 W;  2QEX W;  4CPK A;  1BXY A; 
#chains in the Genus database with same CATH homology
 3CC2 W;  1YJ9 W;  3G4S W;  3J7Z Z;  4IOA W;  3CXC V;  1S72 W;  1VQL W;  5DM6 W;  3G71 W;  3CCV W;  1VQ5 W;  5HL7 W;  3CCQ W;  1W2B V;  5JVG W;  4IO9 W;  1VQM W;  1QVG V;  3CMA W;  3CCJ W;  1Q7Y X;  4WF9 W;  4UY8 Z;  1VQK W;  1Q82 X;  3CME W;  1VQ6 W;  1NJI X;  1QVF V;  4WCE W;  5GAH a;  5GAE a;  5DM7 W;  1K9M X;  4C1N A;  2QA4 W;  1YIT W;  2ZJP W;  2OTL W;  3CD6 W;  1YIJ W;  3OW2 V;  3CC7 W;  1KC8 X;  1VQ4 W;  1Q81 X;  1KQS V;  1M90 X;  4U67 W;  3CCM W;  3PIO W;  4WFB W;  2ZJQ W;  1VQP W;  1YHQ W;  1VQ8 W;  4WFA W;  1KD1 X;  3CF5 W;  2OTJ W;  3CCE W;  4IOC W;  3CCS W;  1VQN W;  5GAD a;  3CCR W;  1M1K X;  3CPW V;  5GAG a;  3CCU W;  1YJN W;  4WFN W;  1VQ9 W;  2ZJR W;  3DLL W;  1Q86 X;  3CCL W;  1K73 X;  1JJ2 V;  1K8A X;  1VQ7 W;  5JVH W;  1VQO W;  1YJW W;  1N8R X;  3PIP W;  3CC4 W;  1YI2 W;  3I55 W;  3G6E W;  3I56 W;  2QEX W;  1BXY A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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