2OTNA

Crystal structure of the catalytically active form of diaminopimelate epimerase from bacillus anthracis
Total Genus 65
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
65
sequence length
293
structure length
293
Chain Sequence
b'VPRGSHMSQFSFTKMHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPSDVAPVKMRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEDTVFTIETLAGIVTAEVTVEEGKVTLAKIDMGAPRLTRAEIPMLGEGETPFIRENFLYNNHRYAFTAVSMGNPHAVIFVDDVEQAPLTTLGPVLETHEMFPERVNVEFIEILNEEEMNFRVWERGSGVTQACGTGACAAVVASILNGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYEYKIE'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Diaminopimelate epimerase
publication title Crystal structure and inhibition of a catalytically active form of diaminopimelate epimerase (DapF)from Bacillus anthracis
rcsb
source organism Bacillus anthracis str.
molecule tags Isomerase
total genus 65
structure length 293
sequence length 293
chains with identical sequence B
ec nomenclature ec 5.1.1.7: Diaminopimelate epimerase.
pdb deposition date 2007-02-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01678 DAP_epimerase Diaminopimelate epimerase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.310.10 Alpha Beta Roll Diaminopimelate Epimerase; Chain A, domain 1 Diaminopimelate Epimerase; Chain A, domain 1 2otnA02
3.10.310.10 Alpha Beta Roll Diaminopimelate Epimerase; Chain A, domain 1 Diaminopimelate Epimerase; Chain A, domain 1 2otnA01
2Q9JA 4JBDA 5HA4A 1T6KA 2AZPA 2GKJA 3EDNA 1U0KA 1U1XA 1U1VA 4K8LA 4DUNA 5H2YA 2PW0A 4J9WA 3EKMA 3G7KA 4LB0A 1U1WA 4Q60A 1W61A 4JD7A 2PVZA 1XUAA 1SDJA 1XUBA 4J9XA 4K7GB 2OTNA 3EJXA 2Q9HA 4IJZA 2GKEA 1QYAA 1GQZA 1QY9A 1W62A 5IWEA 5M47A 2H9FA 1S7JA 4JCIA 1YM5A 3FVEA 1TM0A 4K7XA 4IK0A 1BWZA 5H2GA 4Q2HA 4JUUA
chains in the Genus database with same CATH superfamily
1U0KA 1WPMA 3PW9A 2LT2A 4J9WA 2QB7A 1K23A 4K7GB 2ZXOA 1GQZA 5IWEA 5M47A 2H9FA 4LG3A 5HA4A 2MPBA 1U1XA 4K8LA 3PVHA 5H2YA 3G98A 2YMAA 2Q9HA 2GKEA 1QY9A 1TM0A 4K7XA 1BWZA 4GL6A 4JBDA 2ZVFA 3DEVA 1T6KA 3EDNA 3IGHX 2QB8A 2PW0A 5ANPA 3EKMA 4LB0A 4Q60A 4LS9A 2ZXRA 1W61A 1SDJA 1XUAA 2OTNA 3W5WA 1W62A 2QB6A 1S7JA 3FVEA 4PY9A 3PTJA 2ZXPA 4Q2HA 1IR6A 2EB0A 2Q9JA 2AZPA 2GKJA 4DUNA 1U1VA 1K20A 2ENXA 3ICJA 4OA3A 2IW4A 3WQZA 3G7KA 1U1WA 4JD7A 2PVZA 4J9XA 1XUBA 2KW7A 3EJXA 4IJZA 1QYAA 2KPTA 1I74A 4JCIA 1YM5A 4IK0A 1WPPA 4RPAA 5H2GA 4JUUA 2HAWA
chains in the Genus database with same CATH topology
1U0KA 1WPMA 3PW9A 2LT2A 4J9WA 2QB7A 1K23A 4K7GB 2ZXOA 1GQZA 5IWEA 5M47A 2H9FA 4LG3A 5HA4A 2MPBA 1U1XA 4K8LA 3PVHA 5H2YA 3G98A 2YMAA 2Q9HA 2GKEA 1QY9A 1TM0A 4K7XA 1BWZA 4GL6A 4JBDA 2ZVFA 3DEVA 1T6KA 3EDNA 3IGHX 2QB8A 2PW0A 5ANPA 3EKMA 4LB0A 4Q60A 4LS9A 2ZXRA 1W61A 1SDJA 1XUAA 2OTNA 3W5WA 1W62A 2QB6A 1S7JA 3FVEA 4PY9A 3PTJA 2ZXPA 4Q2HA 1IR6A 2EB0A 2Q9JA 2AZPA 2GKJA 4DUNA 1U1VA 1K20A 2ENXA 3ICJA 4OA3A 2IW4A 3WQZA 3G7KA 1U1WA 4JD7A 2PVZA 4J9XA 1XUBA 2KW7A 3EJXA 4IJZA 1QYAA 2KPTA 1I74A 4JCIA 1YM5A 4IK0A 1WPPA 4RPAA 5H2GA 4JUUA 2HAWA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2Q9J A;  4JBD A;  5HA4 A;  1T6K A;  2AZP A;  2GKJ A;  3EDN A;  1U0K A;  1U1X A;  1U1V A;  4K8L A;  4DUN A;  5H2Y A;  2PW0 A;  4J9W A;  3EKM A;  3G7K A;  4LB0 A;  1U1W A;  4Q60 A;  1W61 A;  4JD7 A;  2PVZ A;  1XUA A;  1SDJ A;  1XUB A;  4J9X A;  4K7G B;  2OTN A;  3EJX A;  2Q9H A;  4IJZ A;  2GKE A;  1QYA A;  1GQZ A;  1QY9 A;  1W62 A;  5IWE A;  5M47 A;  2H9F A;  1S7J A;  4JCI A;  1YM5 A;  3FVE A;  1TM0 A;  4K7X A;  4IK0 A;  1BWZ A;  5H2G A;  4Q2H A;  4JUU A; 
#chains in the Genus database with same CATH topology
 1U0K A;  1WPM A;  3PW9 A;  2LT2 A;  4J9W A;  2QB7 A;  1K23 A;  4K7G B;  2ZXO A;  1GQZ A;  5IWE A;  5M47 A;  2H9F A;  4LG3 A;  5HA4 A;  2MPB A;  1U1X A;  4K8L A;  3PVH A;  5H2Y A;  3G98 A;  2YMA A;  2Q9H A;  2GKE A;  1QY9 A;  1TM0 A;  4K7X A;  1BWZ A;  4GL6 A;  4JBD A;  2ZVF A;  3DEV A;  1T6K A;  3EDN A;  3IGH X;  2QB8 A;  2PW0 A;  5ANP A;  3EKM A;  4LB0 A;  4Q60 A;  4LS9 A;  2ZXR A;  1W61 A;  1SDJ A;  1XUA A;  2OTN A;  3W5W A;  1W62 A;  2QB6 A;  1S7J A;  3FVE A;  4PY9 A;  3PTJ A;  2ZXP A;  4Q2H A;  1IR6 A;  2EB0 A;  2Q9J A;  2AZP A;  2GKJ A;  4DUN A;  1U1V A;  1K20 A;  2ENX A;  3ICJ A;  4OA3 A;  2IW4 A;  3WQZ A;  3G7K A;  1U1W A;  4JD7 A;  2PVZ A;  4J9X A;  1XUB A;  2KW7 A;  3EJX A;  4IJZ A;  1QYA A;  2KPT A;  1I74 A;  4JCI A;  1YM5 A;  4IK0 A;  1WPP A;  4RPA A;  5H2G A;  4JUU A;  2HAW A; 
#chains in the Genus database with same CATH homology
 1U0K A;  1WPM A;  3PW9 A;  2LT2 A;  4J9W A;  2QB7 A;  1K23 A;  4K7G B;  2ZXO A;  1GQZ A;  5IWE A;  5M47 A;  2H9F A;  4LG3 A;  5HA4 A;  2MPB A;  1U1X A;  4K8L A;  3PVH A;  5H2Y A;  3G98 A;  2YMA A;  2Q9H A;  2GKE A;  1QY9 A;  1TM0 A;  4K7X A;  1BWZ A;  4GL6 A;  4JBD A;  2ZVF A;  3DEV A;  1T6K A;  3EDN A;  3IGH X;  2QB8 A;  2PW0 A;  5ANP A;  3EKM A;  4LB0 A;  4Q60 A;  4LS9 A;  2ZXR A;  1W61 A;  1SDJ A;  1XUA A;  2OTN A;  3W5W A;  1W62 A;  2QB6 A;  1S7J A;  3FVE A;  4PY9 A;  3PTJ A;  2ZXP A;  4Q2H A;  1IR6 A;  2EB0 A;  2Q9J A;  2AZP A;  2GKJ A;  4DUN A;  1U1V A;  1K20 A;  2ENX A;  3ICJ A;  4OA3 A;  2IW4 A;  3WQZ A;  3G7K A;  1U1W A;  4JD7 A;  2PVZ A;  4J9X A;  1XUB A;  2KW7 A;  3EJX A;  4IJZ A;  1QYA A;  2KPT A;  1I74 A;  4JCI A;  1YM5 A;  4IK0 A;  1WPP A;  4RPA A;  5H2G A;  4JUU A;  2HAW A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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