2OTNA

Crystal structure of the catalytically active form of diaminopimelate epimerase from bacillus anthracis
Total Genus 65
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
65
sequence length
293
structure length
293
Chain Sequence
VPRGSHMSQFSFTKMHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPSDVAPVKMRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEDTVFTIETLAGIVTAEVTVEEGKVTLAKIDMGAPRLTRAEIPMLGEGETPFIRENFLYNNHRYAFTAVSMGNPHAVIFVDDVEQAPLTTLGPVLETHEMFPERVNVEFIEILNEEEMNFRVWERGSGVTQACGTGACAAVVASILNGKMERGKEITVHLAGGDLMIAWTEEGNVLMKGPAEVICRGVYEYKIE
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Isomerase
molecule keywords Diaminopimelate epimerase
publication title Crystal structure and inhibition of a catalytically active form of diaminopimelate epimerase (DapF)from Bacillus anthracis
rcsb
source organism Bacillus anthracis str.
total genus 65
structure length 293
sequence length 293
chains with identical sequence B
ec nomenclature ec 5.1.1.7: Diaminopimelate epimerase.
pdb deposition date 2007-02-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01678 DAP_epimerase Diaminopimelate epimerase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.310.10 Alpha Beta Roll Diaminopimelate Epimerase; Chain A, domain 1 Diaminopimelate Epimerase; Chain A, domain 1 2otnA02
3.10.310.10 Alpha Beta Roll Diaminopimelate Epimerase; Chain A, domain 1 Diaminopimelate Epimerase; Chain A, domain 1 2otnA01
5M47A 1S7JA 4IK0A 4JUUA 4Q60A 5H2YA 2Q9HA 1GQZA 2GKEA 2Q9JA 4K8LA 2AZPA 1T6KA 1QY9A 4JBDA 1U1XA 4K7GB 5IWEA 1W61A 2H9FA 4IJZA 1U0KA 4Q2HA 1SDJA 3EJXA 5H2GA 1YM5A 2GKJA 4JCIA 2OTNA 1TM0A 3FVEA 3G7KA 2PW0A 3EKMA 1QYAA 1W62A 1U1WA 5HA4A 4JD7A 4J9XA 3EDNA 1XUAA 1XUBA 4LB0A 4DUNA 2PVZA 4K7XA 1BWZA 4J9WA 1U1VA
chains in the Genus database with same CATH superfamily
5M47A 3PTJA 4OA3A 1S7JA 1IR6A 2HAWA 1WPMA 2H9FA 4IJZA 5ANPA 4RPAA 1WPPA 3ICJA 4JCIA 3W5WA 1TM0A 3G98A 1W62A 4PY9A 3EDNA 4LB0A 2PVZA 2EB0A 2KPTA 1I74A 2ZXPA 4Q60A 2Q9HA 5H2YA 4LS9A 2GKEA 3DEVA 2ZXOA 2PW0A 1QYAA 1K20A 1U1VA 4IK0A 4JUUA 1K23A 2Q9JA 4K8LA 3PW9A 1QY9A 2LT2A 1U1XA 1W61A 3IGHX 1U0KA 1SDJA 1YM5A 2GKJA 2OTNA 3G7KA 3WQZA 2ENXA 2ZVFA 3PVHA 2QB6A 1U1WA 5HA4A 4J9XA 1XUAA 1XUBA 4DUNA 4K7XA 2KW7A 4K7GB 2ZXRA 2QB7A 2QB8A 4GL6A 1GQZA 2IW4A 2AZPA 1T6KA 4JBDA 5IWEA 4Q2HA 2MPBA 4LG3A 3EJXA 5H2GA 3FVEA 3EKMA 2YMAA 4JD7A 1BWZA 4J9WA
chains in the Genus database with same CATH topology
5M47A 3PTJA 4OA3A 1S7JA 1IR6A 2HAWA 1WPMA 2H9FA 4IJZA 5ANPA 4RPAA 1WPPA 3ICJA 4JCIA 3W5WA 1TM0A 3G98A 1W62A 4PY9A 3EDNA 4LB0A 2PVZA 2EB0A 2KPTA 1I74A 2ZXPA 4Q60A 2Q9HA 5H2YA 4LS9A 2GKEA 3DEVA 2ZXOA 2PW0A 1QYAA 1K20A 1U1VA 4IK0A 4JUUA 1K23A 2Q9JA 4K8LA 3PW9A 1QY9A 2LT2A 1U1XA 1W61A 3IGHX 1U0KA 1SDJA 1YM5A 2GKJA 2OTNA 3G7KA 3WQZA 2ENXA 2ZVFA 3PVHA 2QB6A 1U1WA 5HA4A 4J9XA 1XUAA 1XUBA 4DUNA 4K7XA 2KW7A 4K7GB 2ZXRA 2QB7A 2QB8A 4GL6A 1GQZA 2IW4A 2AZPA 1T6KA 4JBDA 5IWEA 4Q2HA 2MPBA 4LG3A 3EJXA 5H2GA 3FVEA 3EKMA 2YMAA 4JD7A 1BWZA 4J9WA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5M47 A;  1S7J A;  4IK0 A;  4JUU A;  4Q60 A;  5H2Y A;  2Q9H A;  1GQZ A;  2GKE A;  2Q9J A;  4K8L A;  2AZP A;  1T6K A;  1QY9 A;  4JBD A;  1U1X A;  4K7G B;  5IWE A;  1W61 A;  2H9F A;  4IJZ A;  1U0K A;  4Q2H A;  1SDJ A;  3EJX A;  5H2G A;  1YM5 A;  2GKJ A;  4JCI A;  2OTN A;  1TM0 A;  3FVE A;  3G7K A;  2PW0 A;  3EKM A;  1QYA A;  1W62 A;  1U1W A;  5HA4 A;  4JD7 A;  4J9X A;  3EDN A;  1XUA A;  1XUB A;  4LB0 A;  4DUN A;  2PVZ A;  4K7X A;  1BWZ A;  4J9W A;  1U1V A; 
#chains in the Genus database with same CATH topology
 5M47 A;  3PTJ A;  4OA3 A;  1S7J A;  1IR6 A;  2HAW A;  1WPM A;  2H9F A;  4IJZ A;  5ANP A;  4RPA A;  1WPP A;  3ICJ A;  4JCI A;  3W5W A;  1TM0 A;  3G98 A;  1W62 A;  4PY9 A;  3EDN A;  4LB0 A;  2PVZ A;  2EB0 A;  2KPT A;  1I74 A;  2ZXP A;  4Q60 A;  2Q9H A;  5H2Y A;  4LS9 A;  2GKE A;  3DEV A;  2ZXO A;  2PW0 A;  1QYA A;  1K20 A;  1U1V A;  4IK0 A;  4JUU A;  1K23 A;  2Q9J A;  4K8L A;  3PW9 A;  1QY9 A;  2LT2 A;  1U1X A;  1W61 A;  3IGH X;  1U0K A;  1SDJ A;  1YM5 A;  2GKJ A;  2OTN A;  3G7K A;  3WQZ A;  2ENX A;  2ZVF A;  3PVH A;  2QB6 A;  1U1W A;  5HA4 A;  4J9X A;  1XUA A;  1XUB A;  4DUN A;  4K7X A;  2KW7 A;  4K7G B;  2ZXR A;  2QB7 A;  2QB8 A;  4GL6 A;  1GQZ A;  2IW4 A;  2AZP A;  1T6K A;  4JBD A;  5IWE A;  4Q2H A;  2MPB A;  4LG3 A;  3EJX A;  5H2G A;  3FVE A;  3EKM A;  2YMA A;  4JD7 A;  1BWZ A;  4J9W A; 
#chains in the Genus database with same CATH homology
 5M47 A;  3PTJ A;  4OA3 A;  1S7J A;  1IR6 A;  2HAW A;  1WPM A;  2H9F A;  4IJZ A;  5ANP A;  4RPA A;  1WPP A;  3ICJ A;  4JCI A;  3W5W A;  1TM0 A;  3G98 A;  1W62 A;  4PY9 A;  3EDN A;  4LB0 A;  2PVZ A;  2EB0 A;  2KPT A;  1I74 A;  2ZXP A;  4Q60 A;  2Q9H A;  5H2Y A;  4LS9 A;  2GKE A;  3DEV A;  2ZXO A;  2PW0 A;  1QYA A;  1K20 A;  1U1V A;  4IK0 A;  4JUU A;  1K23 A;  2Q9J A;  4K8L A;  3PW9 A;  1QY9 A;  2LT2 A;  1U1X A;  1W61 A;  3IGH X;  1U0K A;  1SDJ A;  1YM5 A;  2GKJ A;  2OTN A;  3G7K A;  3WQZ A;  2ENX A;  2ZVF A;  3PVH A;  2QB6 A;  1U1W A;  5HA4 A;  4J9X A;  1XUA A;  1XUB A;  4DUN A;  4K7X A;  2KW7 A;  4K7G B;  2ZXR A;  2QB7 A;  2QB8 A;  4GL6 A;  1GQZ A;  2IW4 A;  2AZP A;  1T6K A;  4JBD A;  5IWE A;  4Q2H A;  2MPB A;  4LG3 A;  3EJX A;  5H2G A;  3FVE A;  3EKM A;  2YMA A;  4JD7 A;  1BWZ A;  4J9W A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...