2OTTX

Crystal structure of cd5_diii
Total Genus 22
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
22
sequence length
98
structure length
94
Chain Sequence
PAVESRLVGGSSICEGTVEVRQGAQWAALCDSSSLRWEEVCREQQCGSVNSYRVLDAGDPTSRGLFCPHQKLSQCHELWERNSYCKKVFVTCQD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Immune system
molecule keywords T-cell surface glycoprotein CD5
publication title Crystal structure of the third extracellular domain of CD5 reveals the fold of a group B scavenger cysteine-rich receptor domain.
pubmed doi rcsb
source organism Homo sapiens
total genus 22
structure length 94
sequence length 98
chains with identical sequence Y
ec nomenclature
pdb deposition date 2007-02-09
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.250.10 Alpha Beta Roll Mac-2 Binding Protein SRCR-like domain 2ottX00
1O5EL 2JOPA 2JP0A 2OTTX 2OYAA 1BY2A 2OY3A 5JFBA 1O5FL 5CE1A 2JA4A 3T2NA 1P57A 1Z8GA 2XRCA
chains in the Genus database with same CATH superfamily
1O5EL 2JOPA 2JP0A 2OTTX 2OYAA 1BY2A 2OY3A 5JFBA 1O5FL 5CE1A 2JA4A 3T2NA 1P57A 1Z8GA 2XRCA
chains in the Genus database with same CATH topology
1O5EL 2JOPA 2JP0A 2OTTX 2OYAA 1BY2A 2OY3A 5JFBA 1O5FL 5CE1A 2JA4A 3T2NA 1P57A 1Z8GA 2XRCA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1O5E L;  2JOP A;  2JP0 A;  2OTT X;  2OYA A;  1BY2 A;  2OY3 A;  5JFB A;  1O5F L;  5CE1 A;  2JA4 A;  3T2N A;  1P57 A;  1Z8G A;  2XRC A; 
#chains in the Genus database with same CATH topology
 1O5E L;  2JOP A;  2JP0 A;  2OTT X;  2OYA A;  1BY2 A;  2OY3 A;  5JFB A;  1O5F L;  5CE1 A;  2JA4 A;  3T2N A;  1P57 A;  1Z8G A;  2XRC A; 
#chains in the Genus database with same CATH homology
 1O5E L;  2JOP A;  2JP0 A;  2OTT X;  2OYA A;  1BY2 A;  2OY3 A;  5JFB A;  1O5F L;  5CE1 A;  2JA4 A;  3T2N A;  1P57 A;  1Z8G A;  2XRC A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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