The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
44
|
sequence length |
175
|
structure length |
175
|
Chain Sequence |
GMSDTVLTGLLDTVWQQFGRGTKDRHHPARHPTLATIGTDGPDLRTLVLRAASHAEATLEFHTDAASPKVAHIRRDARVAIHIWIPKASLQVRAKAIAKILPGDPNLFAQLPEAARMNYQGPVPGTPLPAEPDATPNRFTRLICHLSEIDVLHLTTPHQRAVYTAPDWRGIWVSP
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Crystal structure of pyridoxamine 5'-phosphate oxidase-related FMN-binding (YP_508196.1) from Jannaschia sp. CCS1 at 1.60 A resolution
rcsb |
| molecule tags |
Flavoprotein
|
| source organism |
Jannaschia sp.
|
| molecule keywords |
Pyridoxamine 5'-phosphate oxidase-related, FMN-binding
|
| total genus |
44
|
| structure length |
175
|
| sequence length |
175
|
| chains with identical sequence |
B
|
| ec nomenclature | |
| pdb deposition date | 2007-02-09 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF12766 | Pyridox_oxase_2 | Pyridoxamine 5'-phosphate oxidase |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Roll | Pnp Oxidase; Chain A | Electron Transport, Fmn-binding Protein; Chain A |
#chains in the Genus database with same CATH superfamily 4IRA A; 2HQ7 A; 5ESC A; 1W3O A; 1I0R A; 4XJ2 A; 2AQ6 A; 3DMB A; 1W9A A; 2VPA A; 2ED4 A; 3NFW A; 4F07 A; 1WGB A; 2OL5 A; 1CI0 A; 2RE7 A; 4HMX A; 3ZOG A; 3AWH A; 3FGE A; 2I51 A; 1RZ1 A; 1G77 A; 3R5Y A; 1WLI A; 2X1J A; 3TGV A; 5BNC A; 2FHQ A; 3PFT A; 1W3P A; 3HY8 A; 5JAB A; 2HTD A; 1AXJ A; 1Y30 A; 3SWJ A; 1EJE A; 1VL7 A; 2D5M A; 3R5P A; 3R5Z A; 1WV4 A; 2HHZ A; 1I0S A; 4HMW A; 1USF A; 2HQ9 A; 2ARZ A; 2D38 A; 3AMF A; 3KYF A; 3CP3 A; 3ZOD A; 4YWN A; 3U0I A; 3ZOC A; 1G78 A; 3B5M A; 3CB0 A; 4HMV A; 2HTI A; 1XHN A; 3ZOH A; 4QVB A; 3ZOE A; 1W3R A; 5CHE C; 4N7R C; 4ZKY A; 3EC6 A; 3U35 A; 2FUR A; 2E83 A; 4YBN A; 2R6V A; 3BPK A; 4Y9I A; 3K86 A; 3F7E A; 2IAB A; 3E4V A; 1FLM A; 3U5W A; 1G79 A; 4HMT A; 2QEA A; 3VYA A; 1G76 A; 4R82 A; 1USC A; 2D37 A; 3R5L A; 4XHY A; 1JNW A; 2ECR A; 2A2J A; 2R0X A; 5CHO A; 4Z85 A; 3BNK A; 1YOA A; 3VY2 A; 1RFE A; 2PTF A; 3IN6 A; 3ZOF A; 1DNL A; 2D36 A; 2IG6 A; 4HMS A; 3BA3 A; 3HMZ A; 3H96 A; 4HMU A; 3R5W A; 1XXO A; 3GAS A; 3A6Q A; 2FG9 A; 1YLN A; 3DB0 A; 2ASF A; 1T9M A; 3K88 A; 2I02 A; 3RH7 A; 3DNH A; 2GJG A; 3R5R A; 2NR4 A; 2RDE A; 3U34 A; 4HX6 A; 1WLK A; 4L82 A; 3KYG A; 1TY9 A; 2Q9K A; 2QCK A; 2X1K A; 1W3Q A; 3A6R A; 2OU5 A; 1RZ0 A; 1NRG A; 2IML A; 3K87 A; 3FKH A; 3VY5 A; 2ECU A; 3A20 A; #chains in the Genus database with same CATH topology 4IRA A; 3HE1 A; 2HQ7 A; 5ESC A; 1W3O A; 1I0R A; 4XJ2 A; 2AQ6 A; 3DMB A; 1W9A A; 2VPA A; 4UHV A; 2ED4 A; 3NFW A; 4F07 A; 1WGB A; 1Y12 A; 1CI0 A; 2OL5 A; 2RE7 A; 4HMX A; 3ZOG A; 3AWH A; 3FGE A; 2I51 A; 1RZ1 A; 1G77 A; 3R5Y A; 1WLI A; 2X1J A; 3TGV A; 5BNC A; 2FHQ A; 3PFT A; 1W3P A; 3HY8 A; 5JAB A; 2HTD A; 1AXJ A; 1Y30 A; 3SWJ A; 1EJE A; 1VL7 A; 2D5M A; 3R5P A; 3R5Z A; 1WV4 A; 2HHZ A; 1I0S A; 4HMW A; 1USF A; 2HQ9 A; 2ARZ A; 2D38 A; 3AMF A; 3KYF A; 3CP3 A; 3ZOD A; 4YWN A; 3U0I A; 2GUJ A; 3ZOC A; 1G78 A; 3B5M A; 3CB0 A; 4HMV A; 2L1T A; 2HTI A; 1XHN A; 3ZOH A; 4QVB A; 3V4H A; 3ZOE A; 1W3R A; 5CHE C; 4N7R C; 4ZKY A; 3EC6 A; 3U35 A; 2P5Z X; 2FUR A; 2E83 A; 4YBN A; 2R6V A; 3BPK A; 4Y9I A; 3K86 A; 3F7E A; 2IAB A; 3E4V A; 4W64 A; 1FLM A; 3U5W A; 1G79 A; 4HMT A; 2QEA A; 3VYA A; 1G76 A; 2K4Q A; 4R82 A; 1USC A; 2D37 A; 3R5L A; 4XHY A; 1JNW A; 2ECR A; 2A2J A; 2R0X A; 5CHO A; 4Z85 A; 3BNK A; 1YOA A; 3VY2 A; 1RFE A; 2PTF A; 3IN6 A; 3ZOF A; 1DNL A; 2D36 A; 2IG6 A; 4HMS A; 3BA3 A; 3HMZ A; 3H96 A; 4HMU A; 4TV4 A; 3R5W A; 4MTK A; 3EAA A; 1XXO A; 3GAS A; 3A6Q A; 2FG9 A; 1YLN A; 3DB0 A; 2ASF A; 1T9M A; 3K88 A; 2I02 A; 3RH7 A; 3DNH A; 2GJG A; 3R5R A; 2NR4 A; 2RDE A; 3U34 A; 4HX6 A; 1WLK A; 4L82 A; 3KYG A; 1TY9 A; 2Q9K A; 2QCK A; 2X1K A; 1W3Q A; 3A6R A; 2OU5 A; 1RZ0 A; 1NRG A; 4HKH A; 2IML A; 3K87 A; 3FKH A; 3VY5 A; 2ECU A; 3A20 A; #chains in the Genus database with same CATH homology 4IRA A; 2HQ7 A; 5ESC A; 1W3O A; 1I0R A; 4XJ2 A; 2AQ6 A; 3DMB A; 1W9A A; 2VPA A; 2ED4 A; 3NFW A; 4F07 A; 1WGB A; 2OL5 A; 1CI0 A; 2RE7 A; 4HMX A; 3ZOG A; 3AWH A; 3FGE A; 2I51 A; 1RZ1 A; 1G77 A; 3R5Y A; 1WLI A; 2X1J A; 3TGV A; 5BNC A; 2FHQ A; 3PFT A; 1W3P A; 3HY8 A; 5JAB A; 2HTD A; 1AXJ A; 1Y30 A; 3SWJ A; 1EJE A; 1VL7 A; 2D5M A; 3R5P A; 3R5Z A; 1WV4 A; 2HHZ A; 1I0S A; 4HMW A; 1USF A; 2HQ9 A; 2ARZ A; 2D38 A; 3AMF A; 3KYF A; 3CP3 A; 3ZOD A; 4YWN A; 3U0I A; 3ZOC A; 1G78 A; 3B5M A; 3CB0 A; 4HMV A; 2HTI A; 1XHN A; 3ZOH A; 4QVB A; 3ZOE A; 1W3R A; 5CHE C; 4N7R C; 4ZKY A; 3EC6 A; 3U35 A; 2FUR A; 2E83 A; 4YBN A; 2R6V A; 3BPK A; 4Y9I A; 3K86 A; 3F7E A; 2IAB A; 3E4V A; 1FLM A; 3U5W A; 1G79 A; 4HMT A; 2QEA A; 3VYA A; 1G76 A; 4R82 A; 1USC A; 2D37 A; 3R5L A; 4XHY A; 1JNW A; 2ECR A; 2A2J A; 2R0X A; 5CHO A; 4Z85 A; 3BNK A; 1YOA A; 3VY2 A; 1RFE A; 2PTF A; 3IN6 A; 3ZOF A; 1DNL A; 2D36 A; 2IG6 A; 4HMS A; 3BA3 A; 3HMZ A; 3H96 A; 4HMU A; 3R5W A; 1XXO A; 3GAS A; 3A6Q A; 2FG9 A; 1YLN A; 3DB0 A; 2ASF A; 1T9M A; 3K88 A; 2I02 A; 3RH7 A; 3DNH A; 2GJG A; 3R5R A; 2NR4 A; 2RDE A; 3U34 A; 4HX6 A; 1WLK A; 4L82 A; 3KYG A; 1TY9 A; 2Q9K A; 2QCK A; 2X1K A; 1W3Q A; 3A6R A; 2OU5 A; 1RZ0 A; 1NRG A; 2IML A; 3K87 A; 3FKH A; 3VY5 A; 2ECU A; 3A20 A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
