2OUWA

Crystal structure of alkylhydroperoxidase ahpd core (yp_425393.1) from rhodospirillum rubrum atcc 11170 at 1.95 a resolution
Total Genus 46
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
46
sequence length
135
structure length
135
Chain Sequence
b'GMATVRLLDDAEISTLPEVKAVFDDIRATRGSDFVNNIWRGLANDPALLKRTWEQVKTVMVGEGALDPLTREMIYLAVSTANSCSYCAHSHTAAARAKGMTPAQHAEVLAIIGLAAQTNALVTAMQIPVDEAFLV'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Alkylhydroperoxidase AhpD core
publication title Crystal structure of Alkylhydroperoxidase AhpD core (YP_425393.1) from Rhodospirillum rubrum ATCC 11170 at 1.95 A resolution
rcsb
source organism Rhodospirillum rubrum
molecule tags Oxidoreductase
total genus 46
structure length 135
sequence length 135
chains with identical sequence B
ec nomenclature ec 1.-.-.-:
pdb deposition date 2007-02-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02627 CMD Carboxymuconolactone decarboxylase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1290.10 Mainly Alpha Up-down Bundle AhpD-like AhpD-like 2ouwA00
5DIPA 5DIKA 4G9QA 3BEYA 2OYOA 1ME5A 1P8CA 2GMYA 3C1LA 2O4DA 2Q0TA 2QEUA 2IJCA 1LW1A 1GU9A 3D7IA 2PFXA 2OUWA 2CWQA 1VKEA 1KNCA 2PRRA 3LVYA 2AF7A
chains in the Genus database with same CATH superfamily
4AKRA 3AA6A 5DIPA 5DIKA 3LK2A 4G9QA 3LK3A 3BEYA 2OYOA 5AFUK 1ME5A 1P8CA 3LK41 3AAAA 3AA7A 2GMYA 3C1LA 2O4DA 2Q0TA 2QEUA 2IJCA 2KXPA 3AA1A 3AA0A 1LW1A 2KZ7A 1GU9A 3D7IA 1IZNA 3AAEA 2PFXA 2OUWA 2CWQA 2JN8A 1VKEA 2ES9A 1KNCA 2PRRA 3LVYA 2AF7A 5ADXK
chains in the Genus database with same CATH topology
4AKRA 3AA6A 5DIPA 5DIKA 3LK2A 4G9QA 3LK3A 3BEYA 2OYOA 5AFUK 1ME5A 1P8CA 3LK41 3AAAA 3AA7A 2GMYA 3C1LA 2O4DA 2Q0TA 2QEUA 2IJCA 2KXPA 3AA1A 3AA0A 1LW1A 2KZ7A 1GU9A 3D7IA 1IZNA 3AAEA 2PFXA 2OUWA 2CWQA 2JN8A 1VKEA 2ES9A 1KNCA 2PRRA 3LVYA 2AF7A 5ADXK
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5DIP A;  5DIK A;  4G9Q A;  3BEY A;  2OYO A;  1ME5 A;  1P8C A;  2GMY A;  3C1L A;  2O4D A;  2Q0T A;  2QEU A;  2IJC A;  1LW1 A;  1GU9 A;  3D7I A;  2PFX A;  2OUW A;  2CWQ A;  1VKE A;  1KNC A;  2PRR A;  3LVY A;  2AF7 A; 
#chains in the Genus database with same CATH topology
 4AKR A;  3AA6 A;  5DIP A;  5DIK A;  3LK2 A;  4G9Q A;  3LK3 A;  3BEY A;  2OYO A;  5AFU K;  1ME5 A;  1P8C A;  3LK4 1;  3AAA A;  3AA7 A;  2GMY A;  3C1L A;  2O4D A;  2Q0T A;  2QEU A;  2IJC A;  2KXP A;  3AA1 A;  3AA0 A;  1LW1 A;  2KZ7 A;  1GU9 A;  3D7I A;  1IZN A;  3AAE A;  2PFX A;  2OUW A;  2CWQ A;  2JN8 A;  1VKE A;  2ES9 A;  1KNC A;  2PRR A;  3LVY A;  2AF7 A;  5ADX K; 
#chains in the Genus database with same CATH homology
 4AKR A;  3AA6 A;  5DIP A;  5DIK A;  3LK2 A;  4G9Q A;  3LK3 A;  3BEY A;  2OYO A;  5AFU K;  1ME5 A;  1P8C A;  3LK4 1;  3AAA A;  3AA7 A;  2GMY A;  3C1L A;  2O4D A;  2Q0T A;  2QEU A;  2IJC A;  2KXP A;  3AA1 A;  3AA0 A;  1LW1 A;  2KZ7 A;  1GU9 A;  3D7I A;  1IZN A;  3AAE A;  2PFX A;  2OUW A;  2CWQ A;  2JN8 A;  1VKE A;  2ES9 A;  1KNC A;  2PRR A;  3LVY A;  2AF7 A;  5ADX K; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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