2OVJA

The crystal structure of the human rac gtpase activating protein 1 (racgap1) mgcracgap.
Total Genus 71
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
71
sequence length
201
structure length
201
Chain Sequence
SMEGMLADFVSQTSPMIPSIVVHCVNEIEQRGLTETGLYRISGCDRTVKELKEKFLRVKTVPLLSKVDDIHAICSLLKDFLRNLKEPLLTFRLNRAFMEAAEITDEDNSIAAMYQAVGELPQANRDTLAFLMIHLQRVAQSPHTKMDVANLAKVFGPTIVAHAVPNPDPVTMLQDIKRQPKVVERLLSLPLEYWSQFMMVE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Signaling protein
molecule keywords Rac GTPase-activating protein 1
publication title The crystal structure of the human Rac GTPase activating protein 1 (RACGAP1) MgcRacGAP.
rcsb
source organism Homo sapiens
total genus 71
structure length 201
sequence length 201
ec nomenclature
pdb deposition date 2007-02-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00620 RhoGAP RhoGAP domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.555.10 Mainly Alpha Orthogonal Bundle Phosphatidylinositol 3-kinase; Chain A Rho GTPase activation protein 2ovjA00
2OVJA 2XS6A 3FK2A 2EE5A 3WPSA 3W6RA 3CXLA 1PBWA 1AM4A 3IUGA 3BYIA 1OW3A 2MBGA 5C2JA 3WPQA 3QISA 2EE4A 2NGRB 1GRNB 3KUQA 3EAPA 5C5SA 3MSXB 5JCPA 1F7CA 5HPYA 2QV2A 1RGPA 1XA6A 2OSAA 1TX4A 5IRCA 5JD0A
chains in the Genus database with same CATH superfamily
2OVJA 2XS6A 3FK2A 2EE5A 3WPSA 3W6RA 3CXLA 1PBWA 1AM4A 3IUGA 3BYIA 1OW3A 2MBGA 5C2JA 3WPQA 3QISA 2EE4A 2NGRB 1GRNB 3KUQA 3EAPA 5C5SA 3MSXB 5JCPA 1F7CA 5HPYA 2QV2A 1RGPA 1XA6A 2OSAA 1TX4A 5IRCA 5JD0A
chains in the Genus database with same CATH topology
2OVJA 2XS6A 3FK2A 2EE5A 3WPSA 3W6RA 3CXLA 1PBWA 1AM4A 3IUGA 3BYIA 1OW3A 2MBGA 5C2JA 3WPQA 3QISA 2EE4A 2NGRB 1GRNB 3KUQA 3EAPA 5C5SA 3MSXB 5JCPA 1F7CA 5HPYA 2QV2A 1RGPA 1XA6A 2OSAA 1TX4A 5IRCA 5JD0A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2OVJ A;  2XS6 A;  3FK2 A;  2EE5 A;  3WPS A;  3W6R A;  3CXL A;  1PBW A;  1AM4 A;  3IUG A;  3BYI A;  1OW3 A;  2MBG A;  5C2J A;  3WPQ A;  3QIS A;  2EE4 A;  2NGR B;  1GRN B;  3KUQ A;  3EAP A;  5C5S A;  3MSX B;  5JCP A;  1F7C A;  5HPY A;  2QV2 A;  1RGP A;  1XA6 A;  2OSA A;  1TX4 A;  5IRC A;  5JD0 A; 
#chains in the Genus database with same CATH topology
 2OVJ A;  2XS6 A;  3FK2 A;  2EE5 A;  3WPS A;  3W6R A;  3CXL A;  1PBW A;  1AM4 A;  3IUG A;  3BYI A;  1OW3 A;  2MBG A;  5C2J A;  3WPQ A;  3QIS A;  2EE4 A;  2NGR B;  1GRN B;  3KUQ A;  3EAP A;  5C5S A;  3MSX B;  5JCP A;  1F7C A;  5HPY A;  2QV2 A;  1RGP A;  1XA6 A;  2OSA A;  1TX4 A;  5IRC A;  5JD0 A; 
#chains in the Genus database with same CATH homology
 2OVJ A;  2XS6 A;  3FK2 A;  2EE5 A;  3WPS A;  3W6R A;  3CXL A;  1PBW A;  1AM4 A;  3IUG A;  3BYI A;  1OW3 A;  2MBG A;  5C2J A;  3WPQ A;  3QIS A;  2EE4 A;  2NGR B;  1GRN B;  3KUQ A;  3EAP A;  5C5S A;  3MSX B;  5JCP A;  1F7C A;  5HPY A;  2QV2 A;  1RGP A;  1XA6 A;  2OSA A;  1TX4 A;  5IRC A;  5JD0 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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