2OVPA

Structure of the skp1-fbw7 complex
Total Genus 45
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
45
sequence length
144
structure length
134
Chain Sequence
PSIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDPVPLPNVNAAILKKVIQWCTHHDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQW
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Transcription/cell cycle
molecule keywords S-phase kinase-associated protein 1A
publication title Structure of a Fbw7-Skp1-Cyclin E Complex: Multisite-Phosphorylated Substrate Recognition by SCF Ubiquitin Ligases
pubmed doi rcsb
source organism Homo sapiens
total genus 45
structure length 134
sequence length 144
ec nomenclature
pdb deposition date 2007-02-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01466 Skp1 Skp1 family, dimerisation domain
A PF03931 Skp1_POZ Skp1 family, tetramerisation domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.710.10 Alpha Beta 2-Layer Sandwich Potassium Channel Kv1.1; Chain A Potassium Channel Kv1.1; Chain A 2ovpA00
4U2MA 2OVQA 2P1NA 4CXIA 2JZ3C 3BIMA 1NEXA 2VPKA 2FNJC 3HU6A 4W9FB 5BO4C 2IF5A 2E31B 1NN7A 2P1OA 2I2RA 1R29A 3LUTB 4N9F5 2ASTA 3HVEA 3LBZA 3C6PA 2NZ0B 4HXIA 1BUOA 2R9RB 1EODA 1R2BA 5EUPA 4EOZA 3M4TA 4WQOC 5H7GA 4W9CB 5FTAA 3ZTDB 4U2NA 5H7HA 3FKCA 4ZOUA 3ZTCB 3OGMA 3DRZA 1FS1B 2PPIA 3M8VA 1LQBB 2Q81A 1EXBE 2P1QA 4CXTA 1FQVB 1QDVA 4AJYC 4JGHC 1LM8C 5IBKA 4AWJB 3MKSA 3WSOB 3OGLA 2OVPA 3M52A 3HQIA 4J8ZA 5HYWB 5DADA 3OHVA 1VCBB 2OVRA 4W9JB 4W9EB 2E32B 3M5BA 3E4UA 4I6JC 4W9DB 1A68A 3GA1A 3DCGB 2C9WC 4AP2A 1QDWA 1EOEA 2P1MA 1S1GA 3C6NA 3OGKA 3V7DA 4BGCA 5A15A 5BXDA 1HV2A 4U77A 4BKTB 3ZRFB 4B9KB 3ZRCB 2IZVC 2ASSA 3ZUNB 5JH5B 4W9KB 3HVEB 2P1PA 3L2OA 3OHUA 4CXJA 4W9HB 3KVTA 1DSXA 4W9GB 5A6RA 1LDKD 2YY9A 5DAFA 5BXBA 1T1DA 2A79B 4W9HH 3I3NA 5BXHA 1CS3A 2Z8HA 1FS2B 4JTCB 4JTDB 5LLIB 3LNMB 1EOFA 4B9KE 3HTMA 2VKPA 2IHCA 4UIJA 4UYIA 3C6OA 3ZNGB 1R28A 4W9LB 5HZGC 1P22B 3ZKJB 3B84A 4JTAB 4BKSB 2MA9C 2NN2A 4CP3A 4W9IB 4B95B 4CRHA 4APFA
chains in the Genus database with same CATH superfamily
4U2MA 2OVQA 2P1NA 4CXIA 2JZ3C 3BIMA 1NEXA 2VPKA 2FNJC 3HU6A 4W9FB 5BO4C 2IF5A 2E31B 4YY8A 1NN7A 2P1OA 2I2RA 3DRYA 1R29A 3LUTB 4N9F5 2ASTA 3HVEA 3LBZA 3C6PA 2NZ0B 4HXIA 1BUOA 2R9RB 1EODA 1R2BA 5EUPA 4EOZA 3M4TA 4WQOC 5H7GA 4W9CB 5FTAA 3ZTDB 4U2NA 5H7HA 3FKCA 4ZOUA 3ZTCB 3OGMA 3DRZA 4ZGCA 1FS1B 2PPIA 3M8VA 1LQBB 2Q81A 1EXBE 2P1QA 4CXTA 1FQVB 1QDVA 4AJYC 4JGHC 1LM8C 5IBKA 4AWJB 3MKSA 3WSOB 3OGLA 2OVPA 3M52A 3HQIA 4J8ZA 5HYWB 5DADA 3OHVA 1VCBB 2OVRA 4W9JB 4W9EB 2E32B 3M5BA 3E4UA 4I6JC 4W9DB 1A68A 3GA1A 3DCGB 2C9WC 4AP2A 1QDWA 1EOEA 2P1MA 1S1GA 3C6NA 3OGKA 3V7DA 4BGCA 5A15A 5BXDA 1HV2A 4U77A 4BKTB 3ZRFB 4B9KB 3ZRCB 2IZVC 2ASSA 3ZUNB 5JH5B 4W9KB 3HVEB 2P1PA 3L2OA 3OHUA 4CXJA 4W9HB 3KVTA 1DSXA 4W9GB 5A6RA 1LDKD 2YY9A 5DAFA 5BXBA 1T1DA 2A79B 4W9HH 3I3NA 5BXHA 1CS3A 2Z8HA 1FS2B 4JTCB 4JTDB 5LLIB 3LNMB 1EOFA 4B9KE 3HTMA 2VKPA 2IHCA 4UIJA 4UYIA 3C6OA 3ZNGB 1R28A 4W9LB 5HZGC 1P22B 3DRXA 3ZKJB 3B84A 4JTAB 4BKSB 2MA9C 2NN2A 4CP3A 4W9IB 4B95B 4CRHA 4APFA
chains in the Genus database with same CATH topology
4U2MA 2OVQA 2P1NA 4CXIA 2JZ3C 3BIMA 1NEXA 2VPKA 2FNJC 3HU6A 4W9FB 5BO4C 2IF5A 2E31B 4YY8A 1NN7A 2P1OA 2I2RA 3DRYA 1R29A 3LUTB 4N9F5 2ASTA 3HVEA 3LBZA 3C6PA 2NZ0B 4HXIA 1BUOA 2R9RB 1EODA 1R2BA 5EUPA 4EOZA 3M4TA 4WQOC 5H7GA 4W9CB 5FTAA 3ZTDB 4U2NA 5H7HA 3FKCA 4ZOUA 3ZTCB 3OGMA 3DRZA 4ZGCA 1FS1B 2PPIA 3M8VA 1LQBB 2Q81A 1EXBE 2P1QA 4CXTA 1FQVB 1QDVA 4AJYC 4JGHC 1LM8C 5IBKA 4AWJB 3MKSA 3WSOB 3OGLA 2OVPA 3M52A 3HQIA 4J8ZA 5HYWB 5DADA 3OHVA 1VCBB 2OVRA 4W9JB 4W9EB 2E32B 3M5BA 3E4UA 4I6JC 4W9DB 1A68A 3GA1A 3DCGB 2C9WC 4AP2A 1QDWA 1EOEA 2P1MA 1S1GA 3C6NA 3OGKA 3V7DA 4BGCA 5A15A 5BXDA 1HV2A 4U77A 4BKTB 3ZRFB 4B9KB 3ZRCB 2IZVC 2ASSA 3ZUNB 5JH5B 4W9KB 3HVEB 2P1PA 3L2OA 3OHUA 4CXJA 4W9HB 3KVTA 1DSXA 4W9GB 5A6RA 1LDKD 2YY9A 5DAFA 5BXBA 1T1DA 2A79B 4W9HH 3I3NA 5BXHA 1CS3A 2Z8HA 1FS2B 4JTCB 4JTDB 5LLIB 3LNMB 1EOFA 4B9KE 3HTMA 2VKPA 2IHCA 4UIJA 4UYIA 3C6OA 3ZNGB 1R28A 4W9LB 5HZGC 1P22B 3DRXA 3ZKJB 3B84A 4JTAB 4BKSB 2MA9C 2NN2A 4CP3A 4W9IB 4B95B 4CRHA 4APFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4U2M A;  2OVQ A;  2P1N A;  4CXI A;  2JZ3 C;  3BIM A;  1NEX A;  2VPK A;  2FNJ C;  3HU6 A;  4W9F B;  5BO4 C;  2IF5 A;  2E31 B;  1NN7 A;  2P1O A;  2I2R A;  1R29 A;  3LUT B;  4N9F 5;  2AST A;  3HVE A;  3LBZ A;  3C6P A;  2NZ0 B;  4HXI A;  1BUO A;  2R9R B;  1EOD A;  1R2B A;  5EUP A;  4EOZ A;  3M4T A;  4WQO C;  5H7G A;  4W9C B;  5FTA A;  3ZTD B;  4U2N A;  5H7H A;  3FKC A;  4ZOU A;  3ZTC B;  3OGM A;  3DRZ A;  1FS1 B;  2PPI A;  3M8V A;  1LQB B;  2Q81 A;  1EXB E;  2P1Q A;  4CXT A;  1FQV B;  1QDV A;  4AJY C;  4JGH C;  1LM8 C;  5IBK A;  4AWJ B;  3MKS A;  3WSO B;  3OGL A;  2OVP A;  3M52 A;  3HQI A;  4J8Z A;  5HYW B;  5DAD A;  3OHV A;  1VCB B;  2OVR A;  4W9J B;  4W9E B;  2E32 B;  3M5B A;  3E4U A;  4I6J C;  4W9D B;  1A68 A;  3GA1 A;  3DCG B;  2C9W C;  4AP2 A;  1QDW A;  1EOE A;  2P1M A;  1S1G A;  3C6N A;  3OGK A;  3V7D A;  4BGC A;  5A15 A;  5BXD A;  1HV2 A;  4U77 A;  4BKT B;  3ZRF B;  4B9K B;  3ZRC B;  2IZV C;  2ASS A;  3ZUN B;  5JH5 B;  4W9K B;  3HVE B;  2P1P A;  3L2O A;  3OHU A;  4CXJ A;  4W9H B;  3KVT A;  1DSX A;  4W9G B;  5A6R A;  1LDK D;  2YY9 A;  5DAF A;  5BXB A;  1T1D A;  2A79 B;  4W9H H;  3I3N A;  5BXH A;  1CS3 A;  2Z8H A;  1FS2 B;  4JTC B;  4JTD B;  5LLI B;  3LNM B;  1EOF A;  4B9K E;  3HTM A;  2VKP A;  2IHC A;  4UIJ A;  4UYI A;  3C6O A;  3ZNG B;  1R28 A;  4W9L B;  5HZG C;  1P22 B;  3ZKJ B;  3B84 A;  4JTA B;  4BKS B;  2MA9 C;  2NN2 A;  4CP3 A;  4W9I B;  4B95 B;  4CRH A;  4APF A; 
#chains in the Genus database with same CATH topology
 4U2M A;  2OVQ A;  2P1N A;  4CXI A;  2JZ3 C;  3BIM A;  1NEX A;  2VPK A;  2FNJ C;  3HU6 A;  4W9F B;  5BO4 C;  2IF5 A;  2E31 B;  4YY8 A;  1NN7 A;  2P1O A;  2I2R A;  3DRY A;  1R29 A;  3LUT B;  4N9F 5;  2AST A;  3HVE A;  3LBZ A;  3C6P A;  2NZ0 B;  4HXI A;  1BUO A;  2R9R B;  1EOD A;  1R2B A;  5EUP A;  4EOZ A;  3M4T A;  4WQO C;  5H7G A;  4W9C B;  5FTA A;  3ZTD B;  4U2N A;  5H7H A;  3FKC A;  4ZOU A;  3ZTC B;  3OGM A;  3DRZ A;  4ZGC A;  1FS1 B;  2PPI A;  3M8V A;  1LQB B;  2Q81 A;  1EXB E;  2P1Q A;  4CXT A;  1FQV B;  1QDV A;  4AJY C;  4JGH C;  1LM8 C;  5IBK A;  4AWJ B;  3MKS A;  3WSO B;  3OGL A;  2OVP A;  3M52 A;  3HQI A;  4J8Z A;  5HYW B;  5DAD A;  3OHV A;  1VCB B;  2OVR A;  4W9J B;  4W9E B;  2E32 B;  3M5B A;  3E4U A;  4I6J C;  4W9D B;  1A68 A;  3GA1 A;  3DCG B;  2C9W C;  4AP2 A;  1QDW A;  1EOE A;  2P1M A;  1S1G A;  3C6N A;  3OGK A;  3V7D A;  4BGC A;  5A15 A;  5BXD A;  1HV2 A;  4U77 A;  4BKT B;  3ZRF B;  4B9K B;  3ZRC B;  2IZV C;  2ASS A;  3ZUN B;  5JH5 B;  4W9K B;  3HVE B;  2P1P A;  3L2O A;  3OHU A;  4CXJ A;  4W9H B;  3KVT A;  1DSX A;  4W9G B;  5A6R A;  1LDK D;  2YY9 A;  5DAF A;  5BXB A;  1T1D A;  2A79 B;  4W9H H;  3I3N A;  5BXH A;  1CS3 A;  2Z8H A;  1FS2 B;  4JTC B;  4JTD B;  5LLI B;  3LNM B;  1EOF A;  4B9K E;  3HTM A;  2VKP A;  2IHC A;  4UIJ A;  4UYI A;  3C6O A;  3ZNG B;  1R28 A;  4W9L B;  5HZG C;  1P22 B;  3DRX A;  3ZKJ B;  3B84 A;  4JTA B;  4BKS B;  2MA9 C;  2NN2 A;  4CP3 A;  4W9I B;  4B95 B;  4CRH A;  4APF A; 
#chains in the Genus database with same CATH homology
 4U2M A;  2OVQ A;  2P1N A;  4CXI A;  2JZ3 C;  3BIM A;  1NEX A;  2VPK A;  2FNJ C;  3HU6 A;  4W9F B;  5BO4 C;  2IF5 A;  2E31 B;  4YY8 A;  1NN7 A;  2P1O A;  2I2R A;  3DRY A;  1R29 A;  3LUT B;  4N9F 5;  2AST A;  3HVE A;  3LBZ A;  3C6P A;  2NZ0 B;  4HXI A;  1BUO A;  2R9R B;  1EOD A;  1R2B A;  5EUP A;  4EOZ A;  3M4T A;  4WQO C;  5H7G A;  4W9C B;  5FTA A;  3ZTD B;  4U2N A;  5H7H A;  3FKC A;  4ZOU A;  3ZTC B;  3OGM A;  3DRZ A;  4ZGC A;  1FS1 B;  2PPI A;  3M8V A;  1LQB B;  2Q81 A;  1EXB E;  2P1Q A;  4CXT A;  1FQV B;  1QDV A;  4AJY C;  4JGH C;  1LM8 C;  5IBK A;  4AWJ B;  3MKS A;  3WSO B;  3OGL A;  2OVP A;  3M52 A;  3HQI A;  4J8Z A;  5HYW B;  5DAD A;  3OHV A;  1VCB B;  2OVR A;  4W9J B;  4W9E B;  2E32 B;  3M5B A;  3E4U A;  4I6J C;  4W9D B;  1A68 A;  3GA1 A;  3DCG B;  2C9W C;  4AP2 A;  1QDW A;  1EOE A;  2P1M A;  1S1G A;  3C6N A;  3OGK A;  3V7D A;  4BGC A;  5A15 A;  5BXD A;  1HV2 A;  4U77 A;  4BKT B;  3ZRF B;  4B9K B;  3ZRC B;  2IZV C;  2ASS A;  3ZUN B;  5JH5 B;  4W9K B;  3HVE B;  2P1P A;  3L2O A;  3OHU A;  4CXJ A;  4W9H B;  3KVT A;  1DSX A;  4W9G B;  5A6R A;  1LDK D;  2YY9 A;  5DAF A;  5BXB A;  1T1D A;  2A79 B;  4W9H H;  3I3N A;  5BXH A;  1CS3 A;  2Z8H A;  1FS2 B;  4JTC B;  4JTD B;  5LLI B;  3LNM B;  1EOF A;  4B9K E;  3HTM A;  2VKP A;  2IHC A;  4UIJ A;  4UYI A;  3C6O A;  3ZNG B;  1R28 A;  4W9L B;  5HZG C;  1P22 B;  3DRX A;  3ZKJ B;  3B84 A;  4JTA B;  4BKS B;  2MA9 C;  2NN2 A;  4CP3 A;  4W9I B;  4B95 B;  4CRH A;  4APF A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...