2OVQA

Structure of the skp1-fbw7-cyclinedegc complex
Total Genus 41
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
41
sequence length
144
structure length
134
Chain Sequence
PSIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDPVPLPNVNAAILKKVIQWCTHHDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQW
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Transcription/cell cycle
molecule keywords S-phase kinase-associated protein 1A
publication title Structure of a Fbw7-Skp1-Cyclin E Complex: Multisite-Phosphorylated Substrate Recognition by SCF Ubiquitin Ligases
pubmed doi rcsb
source organism Homo sapiens
total genus 41
structure length 134
sequence length 144
ec nomenclature
pdb deposition date 2007-02-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01466 Skp1 Skp1 family, dimerisation domain
A PF03931 Skp1_POZ Skp1 family, tetramerisation domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.710.10 Alpha Beta 2-Layer Sandwich Potassium Channel Kv1.1; Chain A Potassium Channel Kv1.1; Chain A 2ovqA00
5IBKA 3M52A 3OGMA 3ZTCB 5HZGC 1R2BA 1R29A 3C6PA 1S1GA 4W9HB 5DAFA 1BUOA 2PPIA 3M4TA 3C6NA 4W9IB 4JTAB 3GA1A 5A6RA 3HU6A 4CRHA 4W9CB 4ZOUA 4U2MA 2MA9C 3HTMA 1FS1B 2P1QA 3HVEA 3HQIA 4AP2A 5H7GA 5FTAA 1CS3A 4CXTA 4B9KE 2ASTA 2C9WC 4BKSB 2A79B 1HV2A 3I3NA 4BGCA 2R9RB 3ZRFB 4UYIA 3LNMB 3MKSA 5BO4C 5EUPA 5BXDA 1FQVB 2P1OA 1R28A 1NN7A 3V7DA 2VKPA 4JTDB 3M8VA 4UIJA 3BIMA 2IF5A 5JH5B 2IHCA 4AJYC 3B84A 4B9KB 5BXHA 3OHVA 1P22B 4CXIA 1LM8C 2Q81A 1T1DA 2JZ3C 4W9HH 4CP3A 1A68A 2VPKA 4HXIA 4JTCB 5HYWB 4J8ZA 3ZRCB 1QDWA 5LLIB 3KVTA 4N9F5 1EOEA 3DCGB 2NN2A 5A15A 2YY9A 4W9LB 4AWJB 4APFA 5BXBA 2OVRA 2ASSA 2E31B 3DRZA 2P1MA 2I2RA 2OVPA 3M5BA 3L2OA 1EOFA 1LQBB 4W9DB 4B95B 4CXJA 1QDVA 3LBZA 4EOZA 3E4UA 4W9GB 4I6JC 3ZNGB 1DSXA 2NZ0B 5H7HA 2IZVC 3OGKA 2FNJC 4U77A 1EODA 2E32B 3FKCA 3ZKJB 3ZUNB 4WQOC 3C6OA 2P1NA 5DADA 1FS2B 4JGHC 3WSOB 3ZTDB 2P1PA 4W9FB 3HVEB 3OHUA 4W9EB 2OVQA 4U2NA 4W9KB 1VCBB 1LDKD 4W9JB 1NEXA 2Z8HA 3OGLA 1EXBE 3LUTB 4BKTB
chains in the Genus database with same CATH superfamily
5IBKA 3M52A 3OGMA 3ZTCB 5HZGC 1R2BA 1R29A 3C6PA 1S1GA 4W9HB 5DAFA 1BUOA 2PPIA 3M4TA 3C6NA 4W9IB 4JTAB 3GA1A 5A6RA 3HU6A 4CRHA 3DRXA 4W9CB 4ZOUA 4U2MA 2MA9C 3HTMA 1FS1B 2P1QA 3HVEA 3HQIA 4AP2A 5H7GA 5FTAA 1CS3A 4CXTA 4B9KE 2ASTA 2C9WC 4BKSB 2A79B 1HV2A 3DRYA 3I3NA 4BGCA 2R9RB 3ZRFB 4UYIA 3LNMB 3MKSA 5BO4C 5EUPA 5BXDA 1FQVB 2P1OA 1R28A 1NN7A 3V7DA 4ZGCA 2VKPA 4JTDB 3M8VA 4UIJA 3BIMA 2IF5A 5JH5B 2IHCA 4AJYC 3B84A 4B9KB 5BXHA 3OHVA 1P22B 4CXIA 1LM8C 2Q81A 1T1DA 2JZ3C 4W9HH 4CP3A 1A68A 2VPKA 4HXIA 4JTCB 5HYWB 4J8ZA 3ZRCB 1QDWA 5LLIB 3KVTA 4N9F5 1EOEA 3DCGB 2NN2A 5A15A 2YY9A 4W9LB 4AWJB 4APFA 5BXBA 2OVRA 2ASSA 2E31B 3DRZA 2P1MA 2I2RA 2OVPA 3M5BA 3L2OA 1EOFA 1LQBB 4W9DB 4B95B 4CXJA 4YY8A 1QDVA 3LBZA 4EOZA 3E4UA 4W9GB 4I6JC 3ZNGB 1DSXA 2NZ0B 5H7HA 2IZVC 3OGKA 2FNJC 4U77A 1EODA 2E32B 3FKCA 3ZKJB 3ZUNB 4WQOC 3C6OA 2P1NA 5DADA 1FS2B 4JGHC 3WSOB 3ZTDB 2P1PA 4W9FB 3HVEB 3OHUA 4W9EB 2OVQA 4U2NA 4W9KB 1VCBB 1LDKD 4W9JB 1NEXA 2Z8HA 3OGLA 1EXBE 3LUTB 4BKTB
chains in the Genus database with same CATH topology
5IBKA 3M52A 3OGMA 3ZTCB 5HZGC 1R2BA 1R29A 3C6PA 1S1GA 4W9HB 5DAFA 1BUOA 2PPIA 3M4TA 3C6NA 4W9IB 4JTAB 3GA1A 5A6RA 3HU6A 4CRHA 3DRXA 4W9CB 4ZOUA 4U2MA 2MA9C 3HTMA 1FS1B 2P1QA 3HVEA 3HQIA 4AP2A 5H7GA 5FTAA 1CS3A 4CXTA 4B9KE 2ASTA 2C9WC 4BKSB 2A79B 1HV2A 3DRYA 3I3NA 4BGCA 2R9RB 3ZRFB 4UYIA 3LNMB 3MKSA 5BO4C 5EUPA 5BXDA 1FQVB 2P1OA 1R28A 1NN7A 3V7DA 4ZGCA 2VKPA 4JTDB 3M8VA 4UIJA 3BIMA 2IF5A 5JH5B 2IHCA 4AJYC 3B84A 4B9KB 5BXHA 3OHVA 1P22B 4CXIA 1LM8C 2Q81A 1T1DA 2JZ3C 4W9HH 4CP3A 1A68A 2VPKA 4HXIA 4JTCB 5HYWB 4J8ZA 3ZRCB 1QDWA 5LLIB 3KVTA 4N9F5 1EOEA 3DCGB 2NN2A 5A15A 2YY9A 4W9LB 4AWJB 4APFA 5BXBA 2OVRA 2ASSA 2E31B 3DRZA 2P1MA 2I2RA 2OVPA 3M5BA 3L2OA 1EOFA 1LQBB 4W9DB 4B95B 4CXJA 4YY8A 1QDVA 3LBZA 4EOZA 3E4UA 4W9GB 4I6JC 3ZNGB 1DSXA 2NZ0B 5H7HA 2IZVC 3OGKA 2FNJC 4U77A 1EODA 2E32B 3FKCA 3ZKJB 3ZUNB 4WQOC 3C6OA 2P1NA 5DADA 1FS2B 4JGHC 3WSOB 3ZTDB 2P1PA 4W9FB 3HVEB 3OHUA 4W9EB 2OVQA 4U2NA 4W9KB 1VCBB 1LDKD 4W9JB 1NEXA 2Z8HA 3OGLA 1EXBE 3LUTB 4BKTB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5IBK A;  3M52 A;  3OGM A;  3ZTC B;  5HZG C;  1R2B A;  1R29 A;  3C6P A;  1S1G A;  4W9H B;  5DAF A;  1BUO A;  2PPI A;  3M4T A;  3C6N A;  4W9I B;  4JTA B;  3GA1 A;  5A6R A;  3HU6 A;  4CRH A;  4W9C B;  4ZOU A;  4U2M A;  2MA9 C;  3HTM A;  1FS1 B;  2P1Q A;  3HVE A;  3HQI A;  4AP2 A;  5H7G A;  5FTA A;  1CS3 A;  4CXT A;  4B9K E;  2AST A;  2C9W C;  4BKS B;  2A79 B;  1HV2 A;  3I3N A;  4BGC A;  2R9R B;  3ZRF B;  4UYI A;  3LNM B;  3MKS A;  5BO4 C;  5EUP A;  5BXD A;  1FQV B;  2P1O A;  1R28 A;  1NN7 A;  3V7D A;  2VKP A;  4JTD B;  3M8V A;  4UIJ A;  3BIM A;  2IF5 A;  5JH5 B;  2IHC A;  4AJY C;  3B84 A;  4B9K B;  5BXH A;  3OHV A;  1P22 B;  4CXI A;  1LM8 C;  2Q81 A;  1T1D A;  2JZ3 C;  4W9H H;  4CP3 A;  1A68 A;  2VPK A;  4HXI A;  4JTC B;  5HYW B;  4J8Z A;  3ZRC B;  1QDW A;  5LLI B;  3KVT A;  4N9F 5;  1EOE A;  3DCG B;  2NN2 A;  5A15 A;  2YY9 A;  4W9L B;  4AWJ B;  4APF A;  5BXB A;  2OVR A;  2ASS A;  2E31 B;  3DRZ A;  2P1M A;  2I2R A;  2OVP A;  3M5B A;  3L2O A;  1EOF A;  1LQB B;  4W9D B;  4B95 B;  4CXJ A;  1QDV A;  3LBZ A;  4EOZ A;  3E4U A;  4W9G B;  4I6J C;  3ZNG B;  1DSX A;  2NZ0 B;  5H7H A;  2IZV C;  3OGK A;  2FNJ C;  4U77 A;  1EOD A;  2E32 B;  3FKC A;  3ZKJ B;  3ZUN B;  4WQO C;  3C6O A;  2P1N A;  5DAD A;  1FS2 B;  4JGH C;  3WSO B;  3ZTD B;  2P1P A;  4W9F B;  3HVE B;  3OHU A;  4W9E B;  2OVQ A;  4U2N A;  4W9K B;  1VCB B;  1LDK D;  4W9J B;  1NEX A;  2Z8H A;  3OGL A;  1EXB E;  3LUT B;  4BKT B; 
#chains in the Genus database with same CATH topology
 5IBK A;  3M52 A;  3OGM A;  3ZTC B;  5HZG C;  1R2B A;  1R29 A;  3C6P A;  1S1G A;  4W9H B;  5DAF A;  1BUO A;  2PPI A;  3M4T A;  3C6N A;  4W9I B;  4JTA B;  3GA1 A;  5A6R A;  3HU6 A;  4CRH A;  3DRX A;  4W9C B;  4ZOU A;  4U2M A;  2MA9 C;  3HTM A;  1FS1 B;  2P1Q A;  3HVE A;  3HQI A;  4AP2 A;  5H7G A;  5FTA A;  1CS3 A;  4CXT A;  4B9K E;  2AST A;  2C9W C;  4BKS B;  2A79 B;  1HV2 A;  3DRY A;  3I3N A;  4BGC A;  2R9R B;  3ZRF B;  4UYI A;  3LNM B;  3MKS A;  5BO4 C;  5EUP A;  5BXD A;  1FQV B;  2P1O A;  1R28 A;  1NN7 A;  3V7D A;  4ZGC A;  2VKP A;  4JTD B;  3M8V A;  4UIJ A;  3BIM A;  2IF5 A;  5JH5 B;  2IHC A;  4AJY C;  3B84 A;  4B9K B;  5BXH A;  3OHV A;  1P22 B;  4CXI A;  1LM8 C;  2Q81 A;  1T1D A;  2JZ3 C;  4W9H H;  4CP3 A;  1A68 A;  2VPK A;  4HXI A;  4JTC B;  5HYW B;  4J8Z A;  3ZRC B;  1QDW A;  5LLI B;  3KVT A;  4N9F 5;  1EOE A;  3DCG B;  2NN2 A;  5A15 A;  2YY9 A;  4W9L B;  4AWJ B;  4APF A;  5BXB A;  2OVR A;  2ASS A;  2E31 B;  3DRZ A;  2P1M A;  2I2R A;  2OVP A;  3M5B A;  3L2O A;  1EOF A;  1LQB B;  4W9D B;  4B95 B;  4CXJ A;  4YY8 A;  1QDV A;  3LBZ A;  4EOZ A;  3E4U A;  4W9G B;  4I6J C;  3ZNG B;  1DSX A;  2NZ0 B;  5H7H A;  2IZV C;  3OGK A;  2FNJ C;  4U77 A;  1EOD A;  2E32 B;  3FKC A;  3ZKJ B;  3ZUN B;  4WQO C;  3C6O A;  2P1N A;  5DAD A;  1FS2 B;  4JGH C;  3WSO B;  3ZTD B;  2P1P A;  4W9F B;  3HVE B;  3OHU A;  4W9E B;  2OVQ A;  4U2N A;  4W9K B;  1VCB B;  1LDK D;  4W9J B;  1NEX A;  2Z8H A;  3OGL A;  1EXB E;  3LUT B;  4BKT B; 
#chains in the Genus database with same CATH homology
 5IBK A;  3M52 A;  3OGM A;  3ZTC B;  5HZG C;  1R2B A;  1R29 A;  3C6P A;  1S1G A;  4W9H B;  5DAF A;  1BUO A;  2PPI A;  3M4T A;  3C6N A;  4W9I B;  4JTA B;  3GA1 A;  5A6R A;  3HU6 A;  4CRH A;  3DRX A;  4W9C B;  4ZOU A;  4U2M A;  2MA9 C;  3HTM A;  1FS1 B;  2P1Q A;  3HVE A;  3HQI A;  4AP2 A;  5H7G A;  5FTA A;  1CS3 A;  4CXT A;  4B9K E;  2AST A;  2C9W C;  4BKS B;  2A79 B;  1HV2 A;  3DRY A;  3I3N A;  4BGC A;  2R9R B;  3ZRF B;  4UYI A;  3LNM B;  3MKS A;  5BO4 C;  5EUP A;  5BXD A;  1FQV B;  2P1O A;  1R28 A;  1NN7 A;  3V7D A;  4ZGC A;  2VKP A;  4JTD B;  3M8V A;  4UIJ A;  3BIM A;  2IF5 A;  5JH5 B;  2IHC A;  4AJY C;  3B84 A;  4B9K B;  5BXH A;  3OHV A;  1P22 B;  4CXI A;  1LM8 C;  2Q81 A;  1T1D A;  2JZ3 C;  4W9H H;  4CP3 A;  1A68 A;  2VPK A;  4HXI A;  4JTC B;  5HYW B;  4J8Z A;  3ZRC B;  1QDW A;  5LLI B;  3KVT A;  4N9F 5;  1EOE A;  3DCG B;  2NN2 A;  5A15 A;  2YY9 A;  4W9L B;  4AWJ B;  4APF A;  5BXB A;  2OVR A;  2ASS A;  2E31 B;  3DRZ A;  2P1M A;  2I2R A;  2OVP A;  3M5B A;  3L2O A;  1EOF A;  1LQB B;  4W9D B;  4B95 B;  4CXJ A;  4YY8 A;  1QDV A;  3LBZ A;  4EOZ A;  3E4U A;  4W9G B;  4I6J C;  3ZNG B;  1DSX A;  2NZ0 B;  5H7H A;  2IZV C;  3OGK A;  2FNJ C;  4U77 A;  1EOD A;  2E32 B;  3FKC A;  3ZKJ B;  3ZUN B;  4WQO C;  3C6O A;  2P1N A;  5DAD A;  1FS2 B;  4JGH C;  3WSO B;  3ZTD B;  2P1P A;  4W9F B;  3HVE B;  3OHU A;  4W9E B;  2OVQ A;  4U2N A;  4W9K B;  1VCB B;  1LDK D;  4W9J B;  1NEX A;  2Z8H A;  3OGL A;  1EXB E;  3LUT B;  4BKT B; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...