2OWFA

Crystal structure of ph0725 from pyrococcus horikoshii ot3
Total Genus 82
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
82
sequence length
265
structure length
265
Chain Sequence
b'MVLYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQKLIGKEIRVLSREDVELNFENIVLPLAKENDVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSIYSAVGITGLHIYKFGKSATVAYPEGNMFPTSYYDVIKENAERGLHTLLFLDIKAEKRMYMTANEAMELLLKVEDMKKGGVFTDDTLVVVLARAGSLNPTIRAGYVKDLIREDFGDPPHILIVPGKLHIVEAEYLVEIAGAPREILRVNV'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords diphthine synthase
publication title Crystal structure of PH0725 from Pyrococcus horikoshii OT3
rcsb
source organism Pyrococcus horikoshii
molecule tags Transferase
total genus 82
structure length 265
sequence length 265
ec nomenclature ec 2.1.1.98: Diphthine synthase.
pdb deposition date 2007-02-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00590 TP_methylase Tetrapyrrole (Corrin/Porphyrin) Methylases
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.950.10 Alpha Beta 2-Layer Sandwich Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 2owfA02
3.40.1010.10 Alpha Beta 3-Layer(aba) Sandwich Cobalt-precorrin-4 Transmethylase; domain 1 Cobalt-precorrin-4 Transmethylase; Domain 1 2owfA01
2E8HA 2BB3A 2NPNA 2HUQA 2DXWA 2EMRA 4E16A 2EK7A 2EKAA 2E4NA 1CBFA 2EK3A 2OWGA 2P6DA 2E07A 3ND1A 2EL0A 2HUVA 2EHLA 2DSIA 2EN5A 2P5CA 2DXVA 2YBOA 5HW4A 2EGSA 2EGBA 2OWFA 1WDEA 2P6LA 2DV3A 3FFYA 2E7RA 2EL3A 2EHCA 2HR8A 2PCKA 2DSGA 2EJJA 3FQ6A 2DV5A 2ELDA 1S4DA 2Z6RA 1VCEA 2EGLA 2EJZA 2OWUA 2P6KA 2OWKA 3I4TA 2E0NA 2ELEA 3NUTA 2E16A 2PCGA 2E15A 2E8SA 2QBUA 2PB4A 1PJSA 1WNGA 2HUTA 2ZVBA 2CBFA 2OWVA 1PJQA 3KWPA 2EK4A 2ED3A 2DV7A 2P5FA 2P6IA 3NEIA 1VA0A 2PB6A 2PCAA 2DEKA 2P2XA 3NDCA 2E08A 2E17A 2EL2A 2HUXA 1WYZA 2YBQA 2E8RA 2EMUA 2ENIA 1V9AA 1VE2A 2EH5A 2DV4A 2EH2A 1PJTA 2EK2A 2E8QA 2E0KA 2ED5A 2PCMA 2ZVCA 2EL1A 2DSHA 2P9DA 2PCIA 2PB5A 1VHVA 2EJKA 2PCHA 2EEQA 2DXXA 2E4RA 2EH4A 3HH1A
chains in the Genus database with same CATH superfamily
2E8HA 3UV3A 2BB3A 2NPNA 2HUQA 2DXWA 3T0FA 2EMRA 4E16A 3UTCA 2EK7A 2EKAA 3T0GA 4MV0A 2E4NA 1CBFA 2EK3A 2OWGA 2P6DA 2E07A 3ND1A 4MUXA 4N7BA 2EL0A 2HUVA 2EHLA 4MV5A 3UTDA 2DSIA 2EN5A 2P5CA 2DXVA 3SZLA 2YBOA 5HW4A 2EGSA 4EB3A 2EGBA 2OWFA 1WDEA 2P6LA 2DV3A 3FFYA 2E7RA 2EL3A 2EHCA 2HR8A 2PCKA 2DSGA 2EJJA 3FQ6A 2DV5A 2ELDA 4MUYA 1S4DA 2Z6RA 1VCEA 2EGLA 2EJZA 2OWUA 2P6KA 2OWKA 3I4TA 2E0NA 2ELEA 3DNFA 3NUTA 2E16A 2KYYA 2PCGA 3KELA 2E15A 2E8SA 2QBUA 3URKA 2PB4A 3SZUA 1PJSA 1WNGA 2HUTA 2ZVBA 2CBFA 2OWVA 1PJQA 3KWPA 2EK4A 2ED3A 2DV7A 3UWMA 2P5FA 2P6IA 3UV6A 3NEIA 1VA0A 2PB6A 2PCAA 2DEKA 3ZGNA 2P2XA 3NDCA 4H4CA 3UV7A 2E08A 3KE9A 2E17A 2EL2A 2HUXA 1WYZA 2YBQA 3KEMA 3TIXB 3KEFA 2E8RA 2EMUA 4H4DA 2ENIA 3ZGLA 1V9AA 1VE2A 2EH5A 2DV4A 2EH2A 1PJTA 2EK2A 2E8QA 2E0KA 2ED5A 2PCMA 2ZVCA 3F7TA 2EL1A 3LMMA 2DSHA 2P9DA 2PCIA 2PB5A 1VHVA 2EJKA 2PCHA 3SZOA 2EEQA 3KE8A 2DXXA 2E4RA 2EH4A 4H4EA 3HH1A
chains in the Genus database with same CATH topology
2E8HA 3UV3A 2BB3A 2NPNA 2HUQA 2DXWA 3T0FA 2EMRA 4E16A 3UTCA 2EK7A 2EKAA 3T0GA 4MV0A 2E4NA 1CBFA 2EK3A 2OWGA 2P6DA 2E07A 3ND1A 4MUXA 4N7BA 2EL0A 2HUVA 2EHLA 4MV5A 3UTDA 2DSIA 2EN5A 2P5CA 2DXVA 3SZLA 2YBOA 5HW4A 2EGSA 4EB3A 2EGBA 2OWFA 1WDEA 2P6LA 2DV3A 3FFYA 2E7RA 2EL3A 2EHCA 2HR8A 2PCKA 2DSGA 2EJJA 3FQ6A 2DV5A 2ELDA 4MUYA 1S4DA 2Z6RA 1VCEA 2EGLA 2EJZA 2OWUA 2P6KA 2OWKA 3I4TA 2E0NA 2ELEA 3DNFA 3NUTA 2E16A 2KYYA 2PCGA 3KELA 2E15A 2E8SA 2QBUA 3URKA 2PB4A 3SZUA 1PJSA 1WNGA 2HUTA 2ZVBA 2CBFA 2OWVA 1PJQA 3KWPA 2EK4A 2ED3A 2DV7A 3UWMA 2P5FA 2P6IA 3UV6A 3NEIA 1VA0A 2PB6A 2PCAA 2DEKA 3ZGNA 2P2XA 3NDCA 4H4CA 3UV7A 2E08A 3KE9A 2E17A 2EL2A 2HUXA 1WYZA 2YBQA 3KEMA 3TIXB 3KEFA 2E8RA 2EMUA 4H4DA 2ENIA 3ZGLA 1V9AA 1VE2A 2EH5A 2DV4A 2EH2A 1PJTA 2EK2A 2E8QA 2E0KA 2ED5A 2PCMA 2ZVCA 3F7TA 2EL1A 3LMMA 2DSHA 2P9DA 2PCIA 2PB5A 1VHVA 2EJKA 2PCHA 3SZOA 2EEQA 3KE8A 2DXXA 2E4RA 2EH4A 4H4EA 3HH1A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2E8H A;  2BB3 A;  2NPN A;  2HUQ A;  2DXW A;  2EMR A;  4E16 A;  2EK7 A;  2EKA A;  2E4N A;  1CBF A;  2EK3 A;  2OWG A;  2P6D A;  2E07 A;  3ND1 A;  2EL0 A;  2HUV A;  2EHL A;  2DSI A;  2EN5 A;  2P5C A;  2DXV A;  2YBO A;  5HW4 A;  2EGS A;  2EGB A;  2OWF A;  1WDE A;  2P6L A;  2DV3 A;  3FFY A;  2E7R A;  2EL3 A;  2EHC A;  2HR8 A;  2PCK A;  2DSG A;  2EJJ A;  3FQ6 A;  2DV5 A;  2ELD A;  1S4D A;  2Z6R A;  1VCE A;  2EGL A;  2EJZ A;  2OWU A;  2P6K A;  2OWK A;  3I4T A;  2E0N A;  2ELE A;  3NUT A;  2E16 A;  2PCG A;  2E15 A;  2E8S A;  2QBU A;  2PB4 A;  1PJS A;  1WNG A;  2HUT A;  2ZVB A;  2CBF A;  2OWV A;  1PJQ A;  3KWP A;  2EK4 A;  2ED3 A;  2DV7 A;  2P5F A;  2P6I A;  3NEI A;  1VA0 A;  2PB6 A;  2PCA A;  2DEK A;  2P2X A;  3NDC A;  2E08 A;  2E17 A;  2EL2 A;  2HUX A;  1WYZ A;  2YBQ A;  2E8R A;  2EMU A;  2ENI A;  1V9A A;  1VE2 A;  2EH5 A;  2DV4 A;  2EH2 A;  1PJT A;  2EK2 A;  2E8Q A;  2E0K A;  2ED5 A;  2PCM A;  2ZVC A;  2EL1 A;  2DSH A;  2P9D A;  2PCI A;  2PB5 A;  1VHV A;  2EJK A;  2PCH A;  2EEQ A;  2DXX A;  2E4R A;  2EH4 A;  3HH1 A; 
#chains in the Genus database with same CATH topology
 2E8H A;  3UV3 A;  2BB3 A;  2NPN A;  2HUQ A;  2DXW A;  3T0F A;  2EMR A;  4E16 A;  3UTC A;  2EK7 A;  2EKA A;  3T0G A;  4MV0 A;  2E4N A;  1CBF A;  2EK3 A;  2OWG A;  2P6D A;  2E07 A;  3ND1 A;  4MUX A;  4N7B A;  2EL0 A;  2HUV A;  2EHL A;  4MV5 A;  3UTD A;  2DSI A;  2EN5 A;  2P5C A;  2DXV A;  3SZL A;  2YBO A;  5HW4 A;  2EGS A;  4EB3 A;  2EGB A;  2OWF A;  1WDE A;  2P6L A;  2DV3 A;  3FFY A;  2E7R A;  2EL3 A;  2EHC A;  2HR8 A;  2PCK A;  2DSG A;  2EJJ A;  3FQ6 A;  2DV5 A;  2ELD A;  4MUY A;  1S4D A;  2Z6R A;  1VCE A;  2EGL A;  2EJZ A;  2OWU A;  2P6K A;  2OWK A;  3I4T A;  2E0N A;  2ELE A;  3DNF A;  3NUT A;  2E16 A;  2KYY A;  2PCG A;  3KEL A;  2E15 A;  2E8S A;  2QBU A;  3URK A;  2PB4 A;  3SZU A;  1PJS A;  1WNG A;  2HUT A;  2ZVB A;  2CBF A;  2OWV A;  1PJQ A;  3KWP A;  2EK4 A;  2ED3 A;  2DV7 A;  3UWM A;  2P5F A;  2P6I A;  3UV6 A;  3NEI A;  1VA0 A;  2PB6 A;  2PCA A;  2DEK A;  3ZGN A;  2P2X A;  3NDC A;  4H4C A;  3UV7 A;  2E08 A;  3KE9 A;  2E17 A;  2EL2 A;  2HUX A;  1WYZ A;  2YBQ A;  3KEM A;  3TIX B;  3KEF A;  2E8R A;  2EMU A;  4H4D A;  2ENI A;  3ZGL A;  1V9A A;  1VE2 A;  2EH5 A;  2DV4 A;  2EH2 A;  1PJT A;  2EK2 A;  2E8Q A;  2E0K A;  2ED5 A;  2PCM A;  2ZVC A;  3F7T A;  2EL1 A;  3LMM A;  2DSH A;  2P9D A;  2PCI A;  2PB5 A;  1VHV A;  2EJK A;  2PCH A;  3SZO A;  2EEQ A;  3KE8 A;  2DXX A;  2E4R A;  2EH4 A;  4H4E A;  3HH1 A; 
#chains in the Genus database with same CATH homology
 2E8H A;  3UV3 A;  2BB3 A;  2NPN A;  2HUQ A;  2DXW A;  3T0F A;  2EMR A;  4E16 A;  3UTC A;  2EK7 A;  2EKA A;  3T0G A;  4MV0 A;  2E4N A;  1CBF A;  2EK3 A;  2OWG A;  2P6D A;  2E07 A;  3ND1 A;  4MUX A;  4N7B A;  2EL0 A;  2HUV A;  2EHL A;  4MV5 A;  3UTD A;  2DSI A;  2EN5 A;  2P5C A;  2DXV A;  3SZL A;  2YBO A;  5HW4 A;  2EGS A;  4EB3 A;  2EGB A;  2OWF A;  1WDE A;  2P6L A;  2DV3 A;  3FFY A;  2E7R A;  2EL3 A;  2EHC A;  2HR8 A;  2PCK A;  2DSG A;  2EJJ A;  3FQ6 A;  2DV5 A;  2ELD A;  4MUY A;  1S4D A;  2Z6R A;  1VCE A;  2EGL A;  2EJZ A;  2OWU A;  2P6K A;  2OWK A;  3I4T A;  2E0N A;  2ELE A;  3DNF A;  3NUT A;  2E16 A;  2KYY A;  2PCG A;  3KEL A;  2E15 A;  2E8S A;  2QBU A;  3URK A;  2PB4 A;  3SZU A;  1PJS A;  1WNG A;  2HUT A;  2ZVB A;  2CBF A;  2OWV A;  1PJQ A;  3KWP A;  2EK4 A;  2ED3 A;  2DV7 A;  3UWM A;  2P5F A;  2P6I A;  3UV6 A;  3NEI A;  1VA0 A;  2PB6 A;  2PCA A;  2DEK A;  3ZGN A;  2P2X A;  3NDC A;  4H4C A;  3UV7 A;  2E08 A;  3KE9 A;  2E17 A;  2EL2 A;  2HUX A;  1WYZ A;  2YBQ A;  3KEM A;  3TIX B;  3KEF A;  2E8R A;  2EMU A;  4H4D A;  2ENI A;  3ZGL A;  1V9A A;  1VE2 A;  2EH5 A;  2DV4 A;  2EH2 A;  1PJT A;  2EK2 A;  2E8Q A;  2E0K A;  2ED5 A;  2PCM A;  2ZVC A;  3F7T A;  2EL1 A;  3LMM A;  2DSH A;  2P9D A;  2PCI A;  2PB5 A;  1VHV A;  2EJK A;  2PCH A;  3SZO A;  2EEQ A;  3KE8 A;  2DXX A;  2E4R A;  2EH4 A;  4H4E A;  3HH1 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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