2OWUA

Crystal structure of ph0725 from pyrococcus horikoshii ot3
Total Genus 81
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
81
sequence length
265
structure length
265
Chain Sequence
MVLYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQKLIGKEIRVLSREDVELNFENIVLPLAKENDVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSIYSAVGITGLMIYKFGKSATVAYPEGNWFPTSYYDVIKENAERGLHTLLFLDIKAEKRMYMTANEAMELLLKVEDMKKGGVFTDDTLVVVLARAGSLNPTIRAGYVKDLIREDFGDPPHILIVPGKLHIVEAEYLVEIAGAPREILRVNV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords diphthine synthase
publication title Crystal structure of PH0725 from Pyrococcus horikoshii OT3
rcsb
source organism Pyrococcus horikoshii
total genus 81
structure length 265
sequence length 265
chains with identical sequence B
ec nomenclature ec 2.1.1.98: Diphthine synthase.
pdb deposition date 2007-02-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00590 TP_methylase Tetrapyrrole (Corrin/Porphyrin) Methylases
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.950.10 Alpha Beta 2-Layer Sandwich Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 2owuA02
3.40.1010.10 Alpha Beta 3-Layer(aba) Sandwich Cobalt-precorrin-4 Transmethylase; domain 1 Cobalt-precorrin-4 Transmethylase; Domain 1 2owuA01
1WYZA 2EMUA 2NPNA 2OWVA 2PB4A 2HUVA 2E15A 2DV7A 2EGBA 2E4RA 2YBOA 2P6KA 2PB5A 2EL3A 1WDEA 2EL0A 3FQ6A 2E7RA 2EHCA 2HUTA 2BB3A 2EJKA 3KWPA 2EH4A 1PJTA 2P6DA 3ND1A 2EJZA 2ZVCA 2DXWA 2ED5A 1S4DA 2ELDA 2DSIA 1PJSA 1WNGA 2E08A 2P6IA 1VCEA 2QBUA 2P5FA 2ELEA 2EH5A 2EK2A 2ENIA 2EKAA 2EMRA 2E8SA 2DSHA 2YBQA 2EK7A 3I4TA 3HH1A 2PCAA 3NDCA 2EEQA 2E4NA 2OWUA 2EGSA 2EL2A 2E8QA 2DV5A 2P2XA 2ZVBA 1CBFA 2EHLA 2PCMA 1VHVA 2HR8A 2PCIA 2E8RA 2P9DA 1VA0A 2EK4A 2OWFA 2E8HA 2DXVA 2OWGA 2P6LA 2E07A 2HUQA 3FFYA 1V9AA 2DEKA 2CBFA 2EN5A 2DV4A 1VE2A 2HUXA 3NEIA 2PCHA 2PCKA 4E16A 2EH2A 2EK3A 2Z6RA 2ED3A 3NUTA 2E16A 2EJJA 2PB6A 2DXXA 1PJQA 2P5CA 2PCGA 2E0NA 2OWKA 2E0KA 5HW4A 2E17A 2EGLA 2DV3A 2DSGA 2EL1A
chains in the Genus database with same CATH superfamily
1WYZA 2EMUA 2NPNA 2OWVA 2PB4A 2HUVA 2E15A 2DV7A 2EGBA 2E4RA 2YBOA 2P6KA 3KEMA 2PB5A 2EL3A 1WDEA 2EL0A 3FQ6A 3LMMA 4H4DA 2E7RA 3KE8A 2EHCA 2HUTA 2BB3A 2EJKA 3KWPA 2EH4A 3UV3A 1PJTA 2P6DA 3ND1A 2EJZA 3UV6A 2ZVCA 2DXWA 2ED5A 1S4DA 2ELDA 2DSIA 1PJSA 1WNGA 3ZGLA 3TIXB 4H4CA 2E08A 2P6IA 1VCEA 2QBUA 2P5FA 2ELEA 3T0FA 3KEFA 2EH5A 3UTCA 2EK2A 2ENIA 3SZUA 2EKAA 2EMRA 2E8SA 3SZLA 2DSHA 3F7TA 2YBQA 2EK7A 3I4TA 3HH1A 2PCAA 3NDCA 2EEQA 2E4NA 2OWUA 2EGSA 2EL2A 2E8QA 3KE9A 3ZGNA 2DV5A 4N7BA 2P2XA 2ZVBA 1CBFA 2EHLA 2PCMA 1VHVA 2HR8A 2PCIA 4MUXA 2E8RA 4H4EA 2P9DA 3UV7A 4MV0A 1VA0A 2EK4A 2OWFA 2E8HA 2DXVA 2OWGA 2P6LA 2E07A 3URKA 2HUQA 3FFYA 1V9AA 2KYYA 2DEKA 2CBFA 2EN5A 2DV4A 1VE2A 4MUYA 3UWMA 2HUXA 3NEIA 2PCHA 2PCKA 4E16A 2EH2A 2EK3A 2Z6RA 2ED3A 3NUTA 3T0GA 4MV5A 2E16A 3SZOA 2EJJA 2PB6A 4EB3A 2DXXA 1PJQA 2P5CA 3KELA 2PCGA 2E0NA 2OWKA 3UTDA 3DNFA 2E0KA 5HW4A 2E17A 2EGLA 2DV3A 2DSGA 2EL1A
chains in the Genus database with same CATH topology
1WYZA 2EMUA 2NPNA 2OWVA 2PB4A 2HUVA 2E15A 2DV7A 2EGBA 2E4RA 2YBOA 2P6KA 3KEMA 2PB5A 2EL3A 1WDEA 2EL0A 3FQ6A 3LMMA 4H4DA 2E7RA 3KE8A 2EHCA 2HUTA 2BB3A 2EJKA 3KWPA 2EH4A 3UV3A 1PJTA 2P6DA 3ND1A 2EJZA 3UV6A 2ZVCA 2DXWA 2ED5A 1S4DA 2ELDA 2DSIA 1PJSA 1WNGA 3ZGLA 3TIXB 4H4CA 2E08A 2P6IA 1VCEA 2QBUA 2P5FA 2ELEA 3T0FA 3KEFA 2EH5A 3UTCA 2EK2A 2ENIA 3SZUA 2EKAA 2EMRA 2E8SA 3SZLA 2DSHA 3F7TA 2YBQA 2EK7A 3I4TA 3HH1A 2PCAA 3NDCA 2EEQA 2E4NA 2OWUA 2EGSA 2EL2A 2E8QA 3KE9A 3ZGNA 2DV5A 4N7BA 2P2XA 2ZVBA 1CBFA 2EHLA 2PCMA 1VHVA 2HR8A 2PCIA 4MUXA 2E8RA 4H4EA 2P9DA 3UV7A 4MV0A 1VA0A 2EK4A 2OWFA 2E8HA 2DXVA 2OWGA 2P6LA 2E07A 3URKA 2HUQA 3FFYA 1V9AA 2KYYA 2DEKA 2CBFA 2EN5A 2DV4A 1VE2A 4MUYA 3UWMA 2HUXA 3NEIA 2PCHA 2PCKA 4E16A 2EH2A 2EK3A 2Z6RA 2ED3A 3NUTA 3T0GA 4MV5A 2E16A 3SZOA 2EJJA 2PB6A 4EB3A 2DXXA 1PJQA 2P5CA 3KELA 2PCGA 2E0NA 2OWKA 3UTDA 3DNFA 2E0KA 5HW4A 2E17A 2EGLA 2DV3A 2DSGA 2EL1A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1WYZ A;  2EMU A;  2NPN A;  2OWV A;  2PB4 A;  2HUV A;  2E15 A;  2DV7 A;  2EGB A;  2E4R A;  2YBO A;  2P6K A;  2PB5 A;  2EL3 A;  1WDE A;  2EL0 A;  3FQ6 A;  2E7R A;  2EHC A;  2HUT A;  2BB3 A;  2EJK A;  3KWP A;  2EH4 A;  1PJT A;  2P6D A;  3ND1 A;  2EJZ A;  2ZVC A;  2DXW A;  2ED5 A;  1S4D A;  2ELD A;  2DSI A;  1PJS A;  1WNG A;  2E08 A;  2P6I A;  1VCE A;  2QBU A;  2P5F A;  2ELE A;  2EH5 A;  2EK2 A;  2ENI A;  2EKA A;  2EMR A;  2E8S A;  2DSH A;  2YBQ A;  2EK7 A;  3I4T A;  3HH1 A;  2PCA A;  3NDC A;  2EEQ A;  2E4N A;  2OWU A;  2EGS A;  2EL2 A;  2E8Q A;  2DV5 A;  2P2X A;  2ZVB A;  1CBF A;  2EHL A;  2PCM A;  1VHV A;  2HR8 A;  2PCI A;  2E8R A;  2P9D A;  1VA0 A;  2EK4 A;  2OWF A;  2E8H A;  2DXV A;  2OWG A;  2P6L A;  2E07 A;  2HUQ A;  3FFY A;  1V9A A;  2DEK A;  2CBF A;  2EN5 A;  2DV4 A;  1VE2 A;  2HUX A;  3NEI A;  2PCH A;  2PCK A;  4E16 A;  2EH2 A;  2EK3 A;  2Z6R A;  2ED3 A;  3NUT A;  2E16 A;  2EJJ A;  2PB6 A;  2DXX A;  1PJQ A;  2P5C A;  2PCG A;  2E0N A;  2OWK A;  2E0K A;  5HW4 A;  2E17 A;  2EGL A;  2DV3 A;  2DSG A;  2EL1 A; 
#chains in the Genus database with same CATH topology
 1WYZ A;  2EMU A;  2NPN A;  2OWV A;  2PB4 A;  2HUV A;  2E15 A;  2DV7 A;  2EGB A;  2E4R A;  2YBO A;  2P6K A;  3KEM A;  2PB5 A;  2EL3 A;  1WDE A;  2EL0 A;  3FQ6 A;  3LMM A;  4H4D A;  2E7R A;  3KE8 A;  2EHC A;  2HUT A;  2BB3 A;  2EJK A;  3KWP A;  2EH4 A;  3UV3 A;  1PJT A;  2P6D A;  3ND1 A;  2EJZ A;  3UV6 A;  2ZVC A;  2DXW A;  2ED5 A;  1S4D A;  2ELD A;  2DSI A;  1PJS A;  1WNG A;  3ZGL A;  3TIX B;  4H4C A;  2E08 A;  2P6I A;  1VCE A;  2QBU A;  2P5F A;  2ELE A;  3T0F A;  3KEF A;  2EH5 A;  3UTC A;  2EK2 A;  2ENI A;  3SZU A;  2EKA A;  2EMR A;  2E8S A;  3SZL A;  2DSH A;  3F7T A;  2YBQ A;  2EK7 A;  3I4T A;  3HH1 A;  2PCA A;  3NDC A;  2EEQ A;  2E4N A;  2OWU A;  2EGS A;  2EL2 A;  2E8Q A;  3KE9 A;  3ZGN A;  2DV5 A;  4N7B A;  2P2X A;  2ZVB A;  1CBF A;  2EHL A;  2PCM A;  1VHV A;  2HR8 A;  2PCI A;  4MUX A;  2E8R A;  4H4E A;  2P9D A;  3UV7 A;  4MV0 A;  1VA0 A;  2EK4 A;  2OWF A;  2E8H A;  2DXV A;  2OWG A;  2P6L A;  2E07 A;  3URK A;  2HUQ A;  3FFY A;  1V9A A;  2KYY A;  2DEK A;  2CBF A;  2EN5 A;  2DV4 A;  1VE2 A;  4MUY A;  3UWM A;  2HUX A;  3NEI A;  2PCH A;  2PCK A;  4E16 A;  2EH2 A;  2EK3 A;  2Z6R A;  2ED3 A;  3NUT A;  3T0G A;  4MV5 A;  2E16 A;  3SZO A;  2EJJ A;  2PB6 A;  4EB3 A;  2DXX A;  1PJQ A;  2P5C A;  3KEL A;  2PCG A;  2E0N A;  2OWK A;  3UTD A;  3DNF A;  2E0K A;  5HW4 A;  2E17 A;  2EGL A;  2DV3 A;  2DSG A;  2EL1 A; 
#chains in the Genus database with same CATH homology
 1WYZ A;  2EMU A;  2NPN A;  2OWV A;  2PB4 A;  2HUV A;  2E15 A;  2DV7 A;  2EGB A;  2E4R A;  2YBO A;  2P6K A;  3KEM A;  2PB5 A;  2EL3 A;  1WDE A;  2EL0 A;  3FQ6 A;  3LMM A;  4H4D A;  2E7R A;  3KE8 A;  2EHC A;  2HUT A;  2BB3 A;  2EJK A;  3KWP A;  2EH4 A;  3UV3 A;  1PJT A;  2P6D A;  3ND1 A;  2EJZ A;  3UV6 A;  2ZVC A;  2DXW A;  2ED5 A;  1S4D A;  2ELD A;  2DSI A;  1PJS A;  1WNG A;  3ZGL A;  3TIX B;  4H4C A;  2E08 A;  2P6I A;  1VCE A;  2QBU A;  2P5F A;  2ELE A;  3T0F A;  3KEF A;  2EH5 A;  3UTC A;  2EK2 A;  2ENI A;  3SZU A;  2EKA A;  2EMR A;  2E8S A;  3SZL A;  2DSH A;  3F7T A;  2YBQ A;  2EK7 A;  3I4T A;  3HH1 A;  2PCA A;  3NDC A;  2EEQ A;  2E4N A;  2OWU A;  2EGS A;  2EL2 A;  2E8Q A;  3KE9 A;  3ZGN A;  2DV5 A;  4N7B A;  2P2X A;  2ZVB A;  1CBF A;  2EHL A;  2PCM A;  1VHV A;  2HR8 A;  2PCI A;  4MUX A;  2E8R A;  4H4E A;  2P9D A;  3UV7 A;  4MV0 A;  1VA0 A;  2EK4 A;  2OWF A;  2E8H A;  2DXV A;  2OWG A;  2P6L A;  2E07 A;  3URK A;  2HUQ A;  3FFY A;  1V9A A;  2KYY A;  2DEK A;  2CBF A;  2EN5 A;  2DV4 A;  1VE2 A;  4MUY A;  3UWM A;  2HUX A;  3NEI A;  2PCH A;  2PCK A;  4E16 A;  2EH2 A;  2EK3 A;  2Z6R A;  2ED3 A;  3NUT A;  3T0G A;  4MV5 A;  2E16 A;  3SZO A;  2EJJ A;  2PB6 A;  4EB3 A;  2DXX A;  1PJQ A;  2P5C A;  3KEL A;  2PCG A;  2E0N A;  2OWK A;  3UTD A;  3DNF A;  2E0K A;  5HW4 A;  2E17 A;  2EGL A;  2DV3 A;  2DSG A;  2EL1 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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