2OWUA

Crystal structure of ph0725 from pyrococcus horikoshii ot3
Total Genus 81
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
81
sequence length
265
structure length
265
Chain Sequence
b'MVLYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQKLIGKEIRVLSREDVELNFENIVLPLAKENDVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSIYSAVGITGLMIYKFGKSATVAYPEGNWFPTSYYDVIKENAERGLHTLLFLDIKAEKRMYMTANEAMELLLKVEDMKKGGVFTDDTLVVVLARAGSLNPTIRAGYVKDLIREDFGDPPHILIVPGKLHIVEAEYLVEIAGAPREILRVNV'
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule keywords diphthine synthase
publication title Crystal structure of PH0725 from Pyrococcus horikoshii OT3
rcsb
source organism Pyrococcus horikoshii
molecule tags Transferase
total genus 81
structure length 265
sequence length 265
chains with identical sequence B
ec nomenclature ec 2.1.1.98: Diphthine synthase.
pdb deposition date 2007-02-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00590 TP_methylase Tetrapyrrole (Corrin/Porphyrin) Methylases
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.950.10 Alpha Beta 2-Layer Sandwich Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 2owuA02
3.40.1010.10 Alpha Beta 3-Layer(aba) Sandwich Cobalt-precorrin-4 Transmethylase; domain 1 Cobalt-precorrin-4 Transmethylase; Domain 1 2owuA01
2EH5A 2EJJA 2E16A 2EK7A 2PCAA 2E17A 2BB3A 2DV7A 2DXXA 2ED3A 1WNGA 2E7RA 1WYZA 2DV4A 2ZVBA 2DXWA 2NPNA 2EGLA 2E8HA 2YBOA 2E8RA 2E8QA 2ZVCA 2PCGA 4E16A 2EHLA 3FQ6A 2E4RA 2DSHA 2EK3A 2E0KA 2CBFA 1VHVA 2HUXA 1VA0A 2EEQA 1PJQA 2EK2A 2EHCA 1CBFA 2EH2A 2E08A 2DV3A 2P5FA 2EN5A 2EL2A 2DSGA 3I4TA 2OWVA 2OWUA 3NEIA 2PCIA 2PB6A 3NDCA 2EJKA 2EL0A 3NUTA 2DXVA 2HUTA 1V9AA 2PB5A 1S4DA 2OWGA 2E0NA 2EGSA 2E07A 2ELEA 2PCKA 3FFYA 1PJSA 3ND1A 2P5CA 2HUQA 2OWKA 1VCEA 3KWPA 2PB4A 2E8SA 2EL3A 5HW4A 2E15A 2P6KA 2DSIA 1VE2A 2P2XA 2HUVA 2QBUA 2ELDA 2P9DA 2P6LA 2DV5A 2EMUA 3HH1A 2P6IA 2EK4A 2PCMA 2YBQA 2EJZA 2HR8A 2EGBA 2EL1A 2PCHA 1WDEA 2Z6RA 2EMRA 2ED5A 2OWFA 2EH4A 2ENIA 2DEKA 2EKAA 1PJTA 2P6DA 2E4NA
chains in the Genus database with same CATH superfamily
3UTCA 2EH5A 2EJJA 2E16A 2EK7A 2PCAA 2E17A 3F7TA 2BB3A 2DV7A 2DXXA 3KEFA 2ED3A 1WNGA 2E7RA 1WYZA 2KYYA 2DV4A 2ZVBA 2DXWA 2NPNA 4H4EA 2EGLA 2E8HA 2YBOA 2E8RA 2E8QA 2ZVCA 2PCGA 4E16A 2EHLA 3FQ6A 2E4RA 3UV7A 2DSHA 2EK3A 2E0KA 2CBFA 1VHVA 2HUXA 1VA0A 3KE9A 2EEQA 1PJQA 2EK2A 2EHCA 1CBFA 2EH2A 3T0GA 2E08A 2DV3A 2P5FA 3DNFA 2EN5A 3ZGNA 2EL2A 2DSGA 3I4TA 2OWVA 2OWUA 3NEIA 2PCIA 2PB6A 3NDCA 2EJKA 2EL0A 3NUTA 2DXVA 2HUTA 1V9AA 2PB5A 1S4DA 2OWGA 3URKA 2E0NA 2EGSA 2E07A 2ELEA 4MV0A 2PCKA 3FFYA 1PJSA 3UTDA 3ND1A 3KELA 2P5CA 3SZUA 4MV5A 2HUQA 3KEMA 2OWKA 4N7BA 1VCEA 3KWPA 2PB4A 2E8SA 4H4CA 2EL3A 5HW4A 2E15A 2P6KA 2DSIA 3LMMA 3UV3A 1VE2A 2P2XA 3ZGLA 2HUVA 3T0FA 2QBUA 3UWMA 2ELDA 2P9DA 2P6LA 2DV5A 2EMUA 3HH1A 3UV6A 2P6IA 4H4DA 2EK4A 2PCMA 3SZLA 2YBQA 2EJZA 2HR8A 2EGBA 3KE8A 2EL1A 2PCHA 1WDEA 2Z6RA 2EMRA 2ED5A 2OWFA 2EH4A 2ENIA 2DEKA 2EKAA 4MUXA 4MUYA 4EB3A 1PJTA 2P6DA 3TIXB 3SZOA 2E4NA
chains in the Genus database with same CATH topology
3UTCA 2EH5A 2EJJA 2E16A 2EK7A 2PCAA 2E17A 3F7TA 2BB3A 2DV7A 2DXXA 3KEFA 2ED3A 1WNGA 2E7RA 1WYZA 2KYYA 2DV4A 2ZVBA 2DXWA 2NPNA 4H4EA 2EGLA 2E8HA 2YBOA 2E8RA 2E8QA 2ZVCA 2PCGA 4E16A 2EHLA 3FQ6A 2E4RA 3UV7A 2DSHA 2EK3A 2E0KA 2CBFA 1VHVA 2HUXA 1VA0A 3KE9A 2EEQA 1PJQA 2EK2A 2EHCA 1CBFA 2EH2A 3T0GA 2E08A 2DV3A 2P5FA 3DNFA 2EN5A 3ZGNA 2EL2A 2DSGA 3I4TA 2OWVA 2OWUA 3NEIA 2PCIA 2PB6A 3NDCA 2EJKA 2EL0A 3NUTA 2DXVA 2HUTA 1V9AA 2PB5A 1S4DA 2OWGA 3URKA 2E0NA 2EGSA 2E07A 2ELEA 4MV0A 2PCKA 3FFYA 1PJSA 3UTDA 3ND1A 3KELA 2P5CA 3SZUA 4MV5A 2HUQA 3KEMA 2OWKA 4N7BA 1VCEA 3KWPA 2PB4A 2E8SA 4H4CA 2EL3A 5HW4A 2E15A 2P6KA 2DSIA 3LMMA 3UV3A 1VE2A 2P2XA 3ZGLA 2HUVA 3T0FA 2QBUA 3UWMA 2ELDA 2P9DA 2P6LA 2DV5A 2EMUA 3HH1A 3UV6A 2P6IA 4H4DA 2EK4A 2PCMA 3SZLA 2YBQA 2EJZA 2HR8A 2EGBA 3KE8A 2EL1A 2PCHA 1WDEA 2Z6RA 2EMRA 2ED5A 2OWFA 2EH4A 2ENIA 2DEKA 2EKAA 4MUXA 4MUYA 4EB3A 1PJTA 2P6DA 3TIXB 3SZOA 2E4NA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2EH5 A;  2EJJ A;  2E16 A;  2EK7 A;  2PCA A;  2E17 A;  2BB3 A;  2DV7 A;  2DXX A;  2ED3 A;  1WNG A;  2E7R A;  1WYZ A;  2DV4 A;  2ZVB A;  2DXW A;  2NPN A;  2EGL A;  2E8H A;  2YBO A;  2E8R A;  2E8Q A;  2ZVC A;  2PCG A;  4E16 A;  2EHL A;  3FQ6 A;  2E4R A;  2DSH A;  2EK3 A;  2E0K A;  2CBF A;  1VHV A;  2HUX A;  1VA0 A;  2EEQ A;  1PJQ A;  2EK2 A;  2EHC A;  1CBF A;  2EH2 A;  2E08 A;  2DV3 A;  2P5F A;  2EN5 A;  2EL2 A;  2DSG A;  3I4T A;  2OWV A;  2OWU A;  3NEI A;  2PCI A;  2PB6 A;  3NDC A;  2EJK A;  2EL0 A;  3NUT A;  2DXV A;  2HUT A;  1V9A A;  2PB5 A;  1S4D A;  2OWG A;  2E0N A;  2EGS A;  2E07 A;  2ELE A;  2PCK A;  3FFY A;  1PJS A;  3ND1 A;  2P5C A;  2HUQ A;  2OWK A;  1VCE A;  3KWP A;  2PB4 A;  2E8S A;  2EL3 A;  5HW4 A;  2E15 A;  2P6K A;  2DSI A;  1VE2 A;  2P2X A;  2HUV A;  2QBU A;  2ELD A;  2P9D A;  2P6L A;  2DV5 A;  2EMU A;  3HH1 A;  2P6I A;  2EK4 A;  2PCM A;  2YBQ A;  2EJZ A;  2HR8 A;  2EGB A;  2EL1 A;  2PCH A;  1WDE A;  2Z6R A;  2EMR A;  2ED5 A;  2OWF A;  2EH4 A;  2ENI A;  2DEK A;  2EKA A;  1PJT A;  2P6D A;  2E4N A; 
#chains in the Genus database with same CATH topology
 3UTC A;  2EH5 A;  2EJJ A;  2E16 A;  2EK7 A;  2PCA A;  2E17 A;  3F7T A;  2BB3 A;  2DV7 A;  2DXX A;  3KEF A;  2ED3 A;  1WNG A;  2E7R A;  1WYZ A;  2KYY A;  2DV4 A;  2ZVB A;  2DXW A;  2NPN A;  4H4E A;  2EGL A;  2E8H A;  2YBO A;  2E8R A;  2E8Q A;  2ZVC A;  2PCG A;  4E16 A;  2EHL A;  3FQ6 A;  2E4R A;  3UV7 A;  2DSH A;  2EK3 A;  2E0K A;  2CBF A;  1VHV A;  2HUX A;  1VA0 A;  3KE9 A;  2EEQ A;  1PJQ A;  2EK2 A;  2EHC A;  1CBF A;  2EH2 A;  3T0G A;  2E08 A;  2DV3 A;  2P5F A;  3DNF A;  2EN5 A;  3ZGN A;  2EL2 A;  2DSG A;  3I4T A;  2OWV A;  2OWU A;  3NEI A;  2PCI A;  2PB6 A;  3NDC A;  2EJK A;  2EL0 A;  3NUT A;  2DXV A;  2HUT A;  1V9A A;  2PB5 A;  1S4D A;  2OWG A;  3URK A;  2E0N A;  2EGS A;  2E07 A;  2ELE A;  4MV0 A;  2PCK A;  3FFY A;  1PJS A;  3UTD A;  3ND1 A;  3KEL A;  2P5C A;  3SZU A;  4MV5 A;  2HUQ A;  3KEM A;  2OWK A;  4N7B A;  1VCE A;  3KWP A;  2PB4 A;  2E8S A;  4H4C A;  2EL3 A;  5HW4 A;  2E15 A;  2P6K A;  2DSI A;  3LMM A;  3UV3 A;  1VE2 A;  2P2X A;  3ZGL A;  2HUV A;  3T0F A;  2QBU A;  3UWM A;  2ELD A;  2P9D A;  2P6L A;  2DV5 A;  2EMU A;  3HH1 A;  3UV6 A;  2P6I A;  4H4D A;  2EK4 A;  2PCM A;  3SZL A;  2YBQ A;  2EJZ A;  2HR8 A;  2EGB A;  3KE8 A;  2EL1 A;  2PCH A;  1WDE A;  2Z6R A;  2EMR A;  2ED5 A;  2OWF A;  2EH4 A;  2ENI A;  2DEK A;  2EKA A;  4MUX A;  4MUY A;  4EB3 A;  1PJT A;  2P6D A;  3TIX B;  3SZO A;  2E4N A; 
#chains in the Genus database with same CATH homology
 3UTC A;  2EH5 A;  2EJJ A;  2E16 A;  2EK7 A;  2PCA A;  2E17 A;  3F7T A;  2BB3 A;  2DV7 A;  2DXX A;  3KEF A;  2ED3 A;  1WNG A;  2E7R A;  1WYZ A;  2KYY A;  2DV4 A;  2ZVB A;  2DXW A;  2NPN A;  4H4E A;  2EGL A;  2E8H A;  2YBO A;  2E8R A;  2E8Q A;  2ZVC A;  2PCG A;  4E16 A;  2EHL A;  3FQ6 A;  2E4R A;  3UV7 A;  2DSH A;  2EK3 A;  2E0K A;  2CBF A;  1VHV A;  2HUX A;  1VA0 A;  3KE9 A;  2EEQ A;  1PJQ A;  2EK2 A;  2EHC A;  1CBF A;  2EH2 A;  3T0G A;  2E08 A;  2DV3 A;  2P5F A;  3DNF A;  2EN5 A;  3ZGN A;  2EL2 A;  2DSG A;  3I4T A;  2OWV A;  2OWU A;  3NEI A;  2PCI A;  2PB6 A;  3NDC A;  2EJK A;  2EL0 A;  3NUT A;  2DXV A;  2HUT A;  1V9A A;  2PB5 A;  1S4D A;  2OWG A;  3URK A;  2E0N A;  2EGS A;  2E07 A;  2ELE A;  4MV0 A;  2PCK A;  3FFY A;  1PJS A;  3UTD A;  3ND1 A;  3KEL A;  2P5C A;  3SZU A;  4MV5 A;  2HUQ A;  3KEM A;  2OWK A;  4N7B A;  1VCE A;  3KWP A;  2PB4 A;  2E8S A;  4H4C A;  2EL3 A;  5HW4 A;  2E15 A;  2P6K A;  2DSI A;  3LMM A;  3UV3 A;  1VE2 A;  2P2X A;  3ZGL A;  2HUV A;  3T0F A;  2QBU A;  3UWM A;  2ELD A;  2P9D A;  2P6L A;  2DV5 A;  2EMU A;  3HH1 A;  3UV6 A;  2P6I A;  4H4D A;  2EK4 A;  2PCM A;  3SZL A;  2YBQ A;  2EJZ A;  2HR8 A;  2EGB A;  3KE8 A;  2EL1 A;  2PCH A;  1WDE A;  2Z6R A;  2EMR A;  2ED5 A;  2OWF A;  2EH4 A;  2ENI A;  2DEK A;  2EKA A;  4MUX A;  4MUY A;  4EB3 A;  1PJT A;  2P6D A;  3TIX B;  3SZO A;  2E4N A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...