2OYAA

Crystal structure analysis of the dimeric form of the srcr domain of mouse marco
Total Genus 26
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
26
sequence length
102
structure length
102
Chain Sequence
APLAQRVRIMGGTNRGRAEVYYNNEWGTICDDDWDNNDATVFCRMLGYSRGRALSSYGGGSGNIWLDNVNCRGTENSLWDCSKNSWGNHNCVHNEDAGVECS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Ligand binding protein
molecule keywords Macrophage receptor MARCO
publication title Crystal structure of the cysteine-rich domain of scavenger receptor MARCO reveals the presence of a basic and an acidic cluster that both contribute to ligand recognition.
pubmed doi rcsb
source organism Mus musculus
total genus 26
structure length 102
sequence length 102
chains with identical sequence B
ec nomenclature
pdb deposition date 2007-02-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00530 SRCR Scavenger receptor cysteine-rich domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.250.10 Alpha Beta Roll Mac-2 Binding Protein SRCR-like domain 2oyaA00
2JP0A 1BY2A 1Z8GA 1O5EL 2XRCA 2OTTX 2OYAA 5JFBA 5CE1A 2JOPA 2OY3A 2JA4A 1O5FL 3T2NA 1P57A
chains in the Genus database with same CATH superfamily
2JP0A 1BY2A 1Z8GA 1O5EL 2XRCA 2OTTX 2OYAA 5JFBA 5CE1A 2JOPA 2OY3A 2JA4A 1O5FL 3T2NA 1P57A
chains in the Genus database with same CATH topology
2JP0A 1BY2A 1Z8GA 1O5EL 2XRCA 2OTTX 2OYAA 5JFBA 5CE1A 2JOPA 2OY3A 2JA4A 1O5FL 3T2NA 1P57A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2JP0 A;  1BY2 A;  1Z8G A;  1O5E L;  2XRC A;  2OTT X;  2OYA A;  5JFB A;  5CE1 A;  2JOP A;  2OY3 A;  2JA4 A;  1O5F L;  3T2N A;  1P57 A; 
#chains in the Genus database with same CATH topology
 2JP0 A;  1BY2 A;  1Z8G A;  1O5E L;  2XRC A;  2OTT X;  2OYA A;  5JFB A;  5CE1 A;  2JOP A;  2OY3 A;  2JA4 A;  1O5F L;  3T2N A;  1P57 A; 
#chains in the Genus database with same CATH homology
 2JP0 A;  1BY2 A;  1Z8G A;  1O5E L;  2XRC A;  2OTT X;  2OYA A;  5JFB A;  5CE1 A;  2JOP A;  2OY3 A;  2JA4 A;  1O5F L;  3T2N A;  1P57 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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