2OZBB

Structure of a human prp31-15.5k-u4 snrna complex
Total Genus 89
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
89
sequence length
249
structure length
239
Chain Sequence
EAAPEYRVIVDANNLTVEIENELNIIHKFIRDKYSKRFPELESLVPNALDYIRTVKELGNSLDKCKNNENLQQILTNATIMVVSVTASTTQGQQLSEEELERLEEACDMALELNASKHRIYEYVESRMSFIAPNLSIIIGASTAAKIMGVAGGLTNLSKMPACNIMLLGAQSVLPHTGYIYHSDIVQSLPPDLRRKAARLVAAKCTLAARVDSFHESTEGKVGYELKDEIERKFDKWQE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords RNA comprising the 5' Stem-Loop RNA of U4snRNA
publication title Binding of the human Prp31 Nop domain to a composite RNA-protein platform in U4 snRNP.
pubmed doi rcsb
source organism Homo sapiens
molecule tags Rna binding protein/rna
total genus 89
structure length 239
sequence length 249
chains with identical sequence E
ec nomenclature
pdb deposition date 2007-02-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF01798 Nop snoRNA binding domain, fibrillarin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.246.90 Mainly Alpha Orthogonal Bundle Serum Albumin; Chain A, Domain 1 Serum Albumin; Chain A, Domain 1 2ozbB02
2OZBB 3NMUA 3ICXA 3NVMA 3NVIA 3SIUB 3GQXA 5GIOA 1NT2B 4BY9C 5GIPA 3NVKA 5GINA 3GQUA 3SIVB 3PLAA 2NNWA
chains in the Genus database with same CATH superfamily
1HK3A 4GDLB 4OT2A 3ICXA 3TDLA 2BXGA 3WHQA 5IIXA 5IJFA 2XVWA 1MA9A 1MUSA 3G9KD 1E7AA 4WA6B 2XMOA 1KW2A 3SIVB 2XSIA 2VUEA 1E7GA 1MIWA 2BXFA 4ZBRA 2BXBA 4OR0A 1UORA 3V08A 3LU6A 4LUHA 5GINA 4K71A 3LU8A 4FJCB 4HGKA 4L9KA 2LQHA 4BKEA 2AJEA 1GNIA 1FOUA 4C31B 3PLAA 4G04A 2CKXA 1HK2A 4FIPB 2BXDA 2DBXA 3KIKA 2DBUA 5DBYA 3GQXA 1VZSA 1BM0A 2QMCA 4L8UA 4LB2A 4MBEC 2BXHA 1E7FA 1HK4A 4IW1A 5D7GA 2EFCA 4N0UD 1J7EA 2BXOA 3UIVA 2XVVA 4G03A 3A75A 1HA2A 2BXEA 4L9QA 2LQIA 4F5UA 2BXLA 2BXMA 1N5UA 4J2VA 2OZBB 1H5WA 1E7CA 3JRYA 1KDXA 3MHSB 2E0YA 4Z69A 1SB0A 4I9OA 4EMXA 5IIUA 2BXPA 3B9LA 3FWCC 4PO0A 2BXAA 3B9MA 3JQZA 4D7XA 2VUFA 1TXUA 3WHRA 3NMUA 3NVMA 4GG2A 1E78A 2I2ZA 4OTUA 5DQFA 2Z8JA 3MHHB 4IW2A 4JK4A 2BXIA 1HK1A 3ECPA 2KWFA 2YDFA 5IJ5A 1MM8A 1E7IA 3V03A 5B5TA 3SQJA 2I30A 2XVUA 2V36A 1MIVA 2Z8IA 3BPJA 1KXPD 2BXNA 3NVIA 4F5TA 2NQOA 4ZC6A 1JNBA 4ZBQA 5IFOA 1LOTA 2JUHA 1MIYA 2XW1A 3M99C 4S1YA 4DHXB 4F5SA 5GIPA 1E7EA 4ZCGA 4DM0A 2DBWA 2BXKA 2BXQA 4K2CA 3SIUB 2EFHA 4N0FD 3CX9A 1LNSA 1VFIA 1H9ZA 2AGHB 5BPKA 1AO6A 5IJEA 3WHSA 5FUOA 4LA0A 5GIOA 1E7HA 2EFEA 4NAWB 1BKEA 4FK5B 1IJGA 4E99A 4LB9A 2XW0A 4TQ1A 5ID9A 2LOQA 3GA9L 2E0XA 1MUHA 1TF0A 4BY9C 1J78A 3GQUA 3W1SA 2NNWA 4Z9OA 4F5VA 1HK5A 2DYOA 4N3ZA 2Z8KA 2KBZA 2XVQA 2OT3A 2BX8A 2K0NA 4GDXA 4LUFA 2GUTA 2LXSA 2ROHA 1NT2B 2VDBA 3NVKA 4G01A 5HOZA 4ZBKA 4ZUXV 3V09A 5ID7A 4W4UB 4M70B 2QHBA 1E7BA 2EFDA 2DYMA 1O9XA 4GDKB 3H37A 3FNMA 3FWBC 3KJLA 4TQ0A 1BJ5A 2DG5A 3LU7A 3H3AA 2BXCA 3VQIA 3A73A 4OTTA 4HGMB 1GNJA 2LXTA 2QM6A 5GHKA 5IIHA
chains in the Genus database with same CATH topology
1HK3A 4GDLB 4OT2A 3ICXA 3TDLA 2BXGA 3WHQA 5IIXA 5IJFA 2XVWA 1MA9A 3G9KD 1E7AA 4WA6B 2XMOA 1KW2A 3SIVB 2XSIA 2VUEA 1E7GA 1MIWA 2BXFA 4ZBRA 2BXBA 4OR0A 1UORA 3V08A 3LU6A 4LUHA 5GINA 4K71A 3LU8A 4FJCB 4HGKA 4L9KA 4BKEA 2AJEA 1GNIA 1FOUA 4C31B 3PLAA 4G04A 2CKXA 1HK2A 4FIPB 2BXDA 2DBXA 3KIKA 2DBUA 5DBYA 3GQXA 1VZSA 1BM0A 2QMCA 4L8UA 4LB2A 4MBEC 2BXHA 1E7FA 1HK4A 4IW1A 5D7GA 2EFCA 4N0UD 1J7EA 2BXOA 3UIVA 2XVVA 4G03A 3A75A 1HA2A 2BXEA 4L9QA 4F5UA 2BXLA 2BXMA 1N5UA 4J2VA 2OZBB 1H5WA 1E7CA 3JRYA 3MHSB 2E0YA 4Z69A 4EMXA 5IIUA 2BXPA 3B9LA 3FWCC 4PO0A 2BXAA 3B9MA 3JQZA 2VUFA 1TXUA 3WHRA 3NMUA 3NVMA 4GG2A 1E78A 2I2ZA 4OTUA 5DQFA 2Z8JA 3MHHB 4IW2A 4JK4A 2BXIA 1HK1A 2YDFA 5IJ5A 1E7IA 3V03A 5B5TA 3SQJA 2I30A 2XVUA 2V36A 1MIVA 2Z8IA 1KXPD 2BXNA 3NVIA 4F5TA 2NQOA 4ZC6A 1JNBA 4ZBQA 5IFOA 1LOTA 2JUHA 1MIYA 2XW1A 3M99C 4S1YA 4DHXB 4F5SA 5GIPA 1E7EA 4ZCGA 2DBWA 2BXKA 2BXQA 4K2CA 3SIUB 2EFHA 4N0FD 3CX9A 1LNSA 1VFIA 1H9ZA 1AO6A 5BPKA 5IJEA 3WHSA 5FUOA 4LA0A 5GIOA 1E7HA 2EFEA 4NAWB 1BKEA 4FK5B 1IJGA 4E99A 4LB9A 2XW0A 4TQ1A 5ID9A 2LOQA 3GA9L 2E0XA 4BY9C 1TF0A 1J78A 3GQUA 3W1SA 2NNWA 4Z9OA 4F5VA 1HK5A 2DYOA 4N3ZA 2Z8KA 2KBZA 2XVQA 2OT3A 2BX8A 4GDXA 4LUFA 2ROHA 1NT2B 2VDBA 3NVKA 4G01A 5HOZA 4ZBKA 4ZUXV 3V09A 5ID7A 4W4UB 4M70B 2QHBA 1E7BA 2EFDA 2DYMA 1O9XA 4GDKB 3H37A 3FNMA 3FWBC 3KJLA 4TQ0A 1BJ5A 2DG5A 3LU7A 3H3AA 2BXCA 3VQIA 3A73A 4OTTA 4HGMB 1GNJA 5IIHA 2QM6A 5GHKA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2OZB B;  3NMU A;  3ICX A;  3NVM A;  3NVI A;  3SIU B;  3GQX A;  5GIO A;  1NT2 B;  4BY9 C;  5GIP A;  3NVK A;  5GIN A;  3GQU A;  3SIV B;  3PLA A;  2NNW A; 
#chains in the Genus database with same CATH topology
 1HK3 A;  4GDL B;  4OT2 A;  3ICX A;  3TDL A;  2BXG A;  3WHQ A;  5IIX A;  5IJF A;  2XVW A;  1MA9 A;  1MUS A;  3G9K D;  1E7A A;  4WA6 B;  2XMO A;  1KW2 A;  3SIV B;  2XSI A;  2VUE A;  1E7G A;  1MIW A;  2BXF A;  4ZBR A;  2BXB A;  4OR0 A;  1UOR A;  3V08 A;  3LU6 A;  4LUH A;  5GIN A;  4K71 A;  3LU8 A;  4FJC B;  4HGK A;  4L9K A;  2LQH A;  4BKE A;  2AJE A;  1GNI A;  1FOU A;  4C31 B;  3PLA A;  4G04 A;  2CKX A;  1HK2 A;  4FIP B;  2BXD A;  2DBX A;  3KIK A;  2DBU A;  5DBY A;  3GQX A;  1VZS A;  1BM0 A;  2QMC A;  4L8U A;  4LB2 A;  4MBE C;  2BXH A;  1E7F A;  1HK4 A;  4IW1 A;  5D7G A;  2EFC A;  4N0U D;  1J7E A;  2BXO A;  3UIV A;  2XVV A;  4G03 A;  3A75 A;  1HA2 A;  2BXE A;  4L9Q A;  2LQI A;  4F5U A;  2BXL A;  2BXM A;  1N5U A;  4J2V A;  2OZB B;  1H5W A;  1E7C A;  3JRY A;  1KDX A;  3MHS B;  2E0Y A;  4Z69 A;  1SB0 A;  4I9O A;  4EMX A;  5IIU A;  2BXP A;  3B9L A;  3FWC C;  4PO0 A;  2BXA A;  3B9M A;  3JQZ A;  4D7X A;  2VUF A;  1TXU A;  3WHR A;  3NMU A;  3NVM A;  4GG2 A;  1E78 A;  2I2Z A;  4OTU A;  5DQF A;  2Z8J A;  3MHH B;  4IW2 A;  4JK4 A;  2BXI A;  1HK1 A;  3ECP A;  2KWF A;  2YDF A;  5IJ5 A;  1MM8 A;  1E7I A;  3V03 A;  5B5T A;  3SQJ A;  2I30 A;  2XVU A;  2V36 A;  1MIV A;  2Z8I A;  3BPJ A;  1KXP D;  2BXN A;  3NVI A;  4F5T A;  2NQO A;  4ZC6 A;  1JNB A;  4ZBQ A;  5IFO A;  1LOT A;  2JUH A;  1MIY A;  2XW1 A;  3M99 C;  4S1Y A;  4DHX B;  4F5S A;  5GIP A;  1E7E A;  4ZCG A;  4DM0 A;  2DBW A;  2BXK A;  2BXQ A;  4K2C A;  3SIU B;  2EFH A;  4N0F D;  3CX9 A;  1LNS A;  1VFI A;  1H9Z A;  2AGH B;  5BPK A;  1AO6 A;  5IJE A;  3WHS A;  5FUO A;  4LA0 A;  5GIO A;  1E7H A;  2EFE A;  4NAW B;  1BKE A;  4FK5 B;  1IJG A;  4E99 A;  4LB9 A;  2XW0 A;  4TQ1 A;  5ID9 A;  2LOQ A;  3GA9 L;  2E0X A;  1MUH A;  1TF0 A;  4BY9 C;  1J78 A;  3GQU A;  3W1S A;  2NNW A;  4Z9O A;  4F5V A;  1HK5 A;  2DYO A;  4N3Z A;  2Z8K A;  2KBZ A;  2XVQ A;  2OT3 A;  2BX8 A;  2K0N A;  4GDX A;  4LUF A;  2GUT A;  2LXS A;  2ROH A;  1NT2 B;  2VDB A;  3NVK A;  4G01 A;  5HOZ A;  4ZBK A;  4ZUX V;  3V09 A;  5ID7 A;  4W4U B;  4M70 B;  2QHB A;  1E7B A;  2EFD A;  2DYM A;  1O9X A;  4GDK B;  3H37 A;  3FNM A;  3FWB C;  3KJL A;  4TQ0 A;  1BJ5 A;  2DG5 A;  3LU7 A;  3H3A A;  2BXC A;  3VQI A;  3A73 A;  4OTT A;  4HGM B;  1GNJ A;  2LXT A;  2QM6 A;  5GHK A;  5IIH A; 
#chains in the Genus database with same CATH homology
 1HK3 A;  4GDL B;  4OT2 A;  3ICX A;  3TDL A;  2BXG A;  3WHQ A;  5IIX A;  5IJF A;  2XVW A;  1MA9 A;  3G9K D;  1E7A A;  4WA6 B;  2XMO A;  1KW2 A;  3SIV B;  2XSI A;  2VUE A;  1E7G A;  1MIW A;  2BXF A;  4ZBR A;  2BXB A;  4OR0 A;  1UOR A;  3V08 A;  3LU6 A;  4LUH A;  5GIN A;  4K71 A;  3LU8 A;  4FJC B;  4HGK A;  4L9K A;  4BKE A;  2AJE A;  1GNI A;  1FOU A;  4C31 B;  3PLA A;  4G04 A;  2CKX A;  1HK2 A;  4FIP B;  2BXD A;  2DBX A;  3KIK A;  2DBU A;  5DBY A;  3GQX A;  1VZS A;  1BM0 A;  2QMC A;  4L8U A;  4LB2 A;  4MBE C;  2BXH A;  1E7F A;  1HK4 A;  4IW1 A;  5D7G A;  2EFC A;  4N0U D;  1J7E A;  2BXO A;  3UIV A;  2XVV A;  4G03 A;  3A75 A;  1HA2 A;  2BXE A;  4L9Q A;  4F5U A;  2BXL A;  2BXM A;  1N5U A;  4J2V A;  2OZB B;  1H5W A;  1E7C A;  3JRY A;  3MHS B;  2E0Y A;  4Z69 A;  4EMX A;  5IIU A;  2BXP A;  3B9L A;  3FWC C;  4PO0 A;  2BXA A;  3B9M A;  3JQZ A;  2VUF A;  1TXU A;  3WHR A;  3NMU A;  3NVM A;  4GG2 A;  1E78 A;  2I2Z A;  4OTU A;  5DQF A;  2Z8J A;  3MHH B;  4IW2 A;  4JK4 A;  2BXI A;  1HK1 A;  2YDF A;  5IJ5 A;  1E7I A;  3V03 A;  5B5T A;  3SQJ A;  2I30 A;  2XVU A;  2V36 A;  1MIV A;  2Z8I A;  1KXP D;  2BXN A;  3NVI A;  4F5T A;  2NQO A;  4ZC6 A;  1JNB A;  4ZBQ A;  5IFO A;  1LOT A;  2JUH A;  1MIY A;  2XW1 A;  3M99 C;  4S1Y A;  4DHX B;  4F5S A;  5GIP A;  1E7E A;  4ZCG A;  2DBW A;  2BXK A;  2BXQ A;  4K2C A;  3SIU B;  2EFH A;  4N0F D;  3CX9 A;  1LNS A;  1VFI A;  1H9Z A;  1AO6 A;  5BPK A;  5IJE A;  3WHS A;  5FUO A;  4LA0 A;  5GIO A;  1E7H A;  2EFE A;  4NAW B;  1BKE A;  4FK5 B;  1IJG A;  4E99 A;  4LB9 A;  2XW0 A;  4TQ1 A;  5ID9 A;  2LOQ A;  3GA9 L;  2E0X A;  4BY9 C;  1TF0 A;  1J78 A;  3GQU A;  3W1S A;  2NNW A;  4Z9O A;  4F5V A;  1HK5 A;  2DYO A;  4N3Z A;  2Z8K A;  2KBZ A;  2XVQ A;  2OT3 A;  2BX8 A;  4GDX A;  4LUF A;  2ROH A;  1NT2 B;  2VDB A;  3NVK A;  4G01 A;  5HOZ A;  4ZBK A;  4ZUX V;  3V09 A;  5ID7 A;  4W4U B;  4M70 B;  2QHB A;  1E7B A;  2EFD A;  2DYM A;  1O9X A;  4GDK B;  3H37 A;  3FNM A;  3FWB C;  3KJL A;  4TQ0 A;  1BJ5 A;  2DG5 A;  3LU7 A;  3H3A A;  2BXC A;  3VQI A;  3A73 A;  4OTT A;  4HGM B;  1GNJ A;  5IIH A;  2QM6 A;  5GHK A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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