2OZBB

Structure of a human prp31-15.5k-u4 snrna complex
Total Genus 89
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
89
sequence length
249
structure length
239
Chain Sequence
EAAPEYRVIVDANNLTVEIENELNIIHKFIRDKYSKRFPELESLVPNALDYIRTVKELGNSLDKCKNNENLQQILTNATIMVVSVTASTTQGQQLSEEELERLEEACDMALELNASKHRIYEYVESRMSFIAPNLSIIIGASTAAKIMGVAGGLTNLSKMPACNIMLLGAQSVLPHTGYIYHSDIVQSLPPDLRRKAARLVAAKCTLAARVDSFHESTEGKVGYELKDEIERKFDKWQE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Rna binding protein/rna
molecule keywords RNA comprising the 5' Stem-Loop RNA of U4snRNA
publication title Binding of the human Prp31 Nop domain to a composite RNA-protein platform in U4 snRNP.
pubmed doi rcsb
source organism Homo sapiens
total genus 89
structure length 239
sequence length 249
chains with identical sequence E
ec nomenclature
pdb deposition date 2007-02-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF01798 Nop snoRNA binding domain, fibrillarin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.246.90 Mainly Alpha Orthogonal Bundle Serum Albumin; Chain A, Domain 1 Serum Albumin; Chain A, Domain 1 2ozbB02
2NNWA 5GINA 3NVIA 3SIVB 2OZBB 3SIUB 3GQXA 3GQUA 5GIPA 3PLAA 3NVKA 4BY9C 3NMUA 3NVMA 5GIOA 3ICXA 1NT2B
chains in the Genus database with same CATH superfamily
4N3ZA 2LXSA 2DBXA 1IJGA 3KIKA 5DBYA 3WHQA 4FIPB 3M99C 3NMUA 1BM0A 4C31B 3V03A 1MM8A 3JQZA 3ECPA 1H9ZA 1HK1A 4ZBKA 1TXUA 4NAWB 4L9KA 2I30A 5ID9A 4ZUXV 2BXIA 2DBWA 1VZSA 2YDFA 3H37A 1E7FA 2EFEA 2BXQA 2VDBA 4LA0A 1MIVA 2BXCA 1FOUA 4F5VA 4GDXA 2VUEA 1H5WA 1HK5A 2XMOA 2E0XA 4S1YA 2KWFA 1UORA 3NVKA 2NQOA 3H3AA 4IW1A 1E7HA 4HGKA 2Z8JA 4ZC6A 1MUHA 2BXPA 4Z69A 2LXTA 4FK5B 4OTUA 4K71A 5ID7A 1LOTA 3A75A 4W4UB 2OT3A 4L8UA 2BX8A 2KBZA 2XVVA 3B9MA 3CX9A 3WHRA 2BXLA 2QHBA 4G04A 3SIVB 4I9OA 2JUHA 2BXBA 2BXDA 4F5TA 5FUOA 5IIHA 1E7GA 1MIWA 1N5UA 2NNWA 2BXEA 3WHSA 3A73A 2BXNA 1J78A 3SQJA 3LU8A 2QM6A 4K2CA 2BXKA 1E7CA 2DYOA 2LQHA 4F5UA 5IIUA 1E7IA 2QMCA 3MHHB 4TQ1A 2BXAA 4D7XA 4GDLB 4F5SA 4OTTA 2AJEA 3GA9L 2V36A 3MHSB 2XW0A 4FJCB 2LOQA 4MBEC 1TF0A 1E7AA 1HK3A 2K0NA 3GQUA 4OR0A 3LU6A 5IJ5A 2GUTA 3VQIA 2LQIA 4TQ0A 4BKEA 5D7GA 1BJ5A 1HK4A 5GIPA 4IW2A 4OT2A 2DG5A 2BXOA 1E78A 2DYMA 1AO6A 3BPJA 2XSIA 2BXHA 2EFCA 1NT2B 3ICXA 1MUSA 1HK2A 4E99A 5B5TA 1KW2A 1HA2A 1MIYA 2BXGA 4ZBRA 1VFIA 3JRYA 5IIXA 4N0FD 2VUFA 3FWCC 3GQXA 2E0YA 3TDLA 5BPKA 5IFOA 5IJFA 2I2ZA 1J7EA 4LUFA 4GG2A 4WA6B 2BXMA 1GNJA 3PLAA 1E7BA 1O9XA 1KXPD 2AGHB 3UIVA 2EFDA 1GNIA 3B9LA 4J2VA 3NVIA 3SIUB 1MA9A 3W1SA 3LU7A 1KDXA 1LNSA 1BKEA 4G03A 5IJEA 1SB0A 2ROHA 5GIOA 2XVWA 2BXFA 1E7EA 1JNBA 2CKXA 3FNMA 4G01A 4LB9A 4LB2A 5GINA 5HOZA 4LUHA 4BY9C 2Z8KA 2Z8IA 4ZCGA 4ZBQA 4JK4A 2EFHA 4M70B 3G9KD 4PO0A 4HGMB 4Z9OA 4N0UD 2XW1A 4DM0A 3V08A 5GHKA 3FWBC 3NVMA 4GDKB 2XVQA 3KJLA 2XVUA 4L9QA 2DBUA 3V09A 2OZBB 4EMXA 5DQFA 4DHXB
chains in the Genus database with same CATH topology
4N3ZA 2DBXA 1IJGA 3KIKA 5DBYA 3WHQA 4FIPB 3M99C 3NMUA 1BM0A 4C31B 3V03A 3JQZA 1H9ZA 1HK1A 4ZBKA 1TXUA 4NAWB 4L9KA 2I30A 5ID9A 4ZUXV 2BXIA 2DBWA 1VZSA 2YDFA 3H37A 1E7FA 2EFEA 2BXQA 2VDBA 4LA0A 1MIVA 2BXCA 1FOUA 4F5VA 4GDXA 2VUEA 1H5WA 1HK5A 2XMOA 2E0XA 4S1YA 1UORA 3NVKA 2NQOA 3H3AA 4IW1A 1E7HA 4HGKA 2Z8JA 4ZC6A 2BXPA 4Z69A 4FK5B 4OTUA 4K71A 5ID7A 1LOTA 3A75A 4W4UB 2OT3A 4L8UA 2BX8A 2KBZA 2XVVA 3B9MA 3CX9A 3WHRA 2BXLA 2QHBA 4G04A 3SIVB 2JUHA 2BXBA 2BXDA 4F5TA 5FUOA 5IIHA 1E7GA 1MIWA 1N5UA 2NNWA 2BXEA 3WHSA 3A73A 2BXNA 1J78A 3SQJA 3LU8A 2QM6A 4K2CA 2BXKA 1E7CA 2DYOA 4F5UA 5IIUA 1E7IA 2QMCA 3MHHB 4TQ1A 2BXAA 4GDLB 4F5SA 4OTTA 2AJEA 3GA9L 2V36A 3MHSB 2XW0A 4FJCB 2LOQA 4MBEC 1TF0A 1E7AA 1HK3A 3GQUA 4OR0A 5IJ5A 3LU6A 3VQIA 4TQ0A 4BKEA 5D7GA 1BJ5A 1HK4A 5GIPA 4IW2A 4OT2A 2DG5A 2BXOA 1E78A 2DYMA 1AO6A 2XSIA 2BXHA 2EFCA 1NT2B 3ICXA 1HK2A 4E99A 5B5TA 1KW2A 1HA2A 1MIYA 2BXGA 4ZBRA 1VFIA 3JRYA 5IIXA 4N0FD 2VUFA 3FWCC 3GQXA 2E0YA 3TDLA 5BPKA 5IFOA 5IJFA 2I2ZA 1J7EA 4LUFA 4GG2A 4WA6B 2BXMA 1GNJA 3PLAA 1E7BA 1O9XA 1KXPD 3NVIA 3UIVA 2EFDA 1GNIA 3B9LA 4J2VA 3SIUB 1MA9A 3W1SA 3LU7A 1LNSA 1BKEA 4G03A 5IJEA 2ROHA 5GIOA 2XVWA 2BXFA 1E7EA 1JNBA 2CKXA 3FNMA 4G01A 4LB9A 4LB2A 5GINA 5HOZA 4LUHA 4BY9C 2Z8KA 2Z8IA 4ZCGA 4ZBQA 4JK4A 2EFHA 4M70B 3G9KD 4PO0A 4HGMB 4Z9OA 4N0UD 2XW1A 3V08A 5GHKA 3FWBC 3NVMA 4GDKB 2XVQA 3KJLA 2XVUA 4L9QA 2DBUA 3V09A 2OZBB 4EMXA 5DQFA 4DHXB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2NNW A;  5GIN A;  3NVI A;  3SIV B;  2OZB B;  3SIU B;  3GQX A;  3GQU A;  5GIP A;  3PLA A;  3NVK A;  4BY9 C;  3NMU A;  3NVM A;  5GIO A;  3ICX A;  1NT2 B; 
#chains in the Genus database with same CATH topology
 4N3Z A;  2LXS A;  2DBX A;  1IJG A;  3KIK A;  5DBY A;  3WHQ A;  4FIP B;  3M99 C;  3NMU A;  1BM0 A;  4C31 B;  3V03 A;  1MM8 A;  3JQZ A;  3ECP A;  1H9Z A;  1HK1 A;  4ZBK A;  1TXU A;  4NAW B;  4L9K A;  2I30 A;  5ID9 A;  4ZUX V;  2BXI A;  2DBW A;  1VZS A;  2YDF A;  3H37 A;  1E7F A;  2EFE A;  2BXQ A;  2VDB A;  4LA0 A;  1MIV A;  2BXC A;  1FOU A;  4F5V A;  4GDX A;  2VUE A;  1H5W A;  1HK5 A;  2XMO A;  2E0X A;  4S1Y A;  2KWF A;  1UOR A;  3NVK A;  2NQO A;  3H3A A;  4IW1 A;  1E7H A;  4HGK A;  2Z8J A;  4ZC6 A;  1MUH A;  2BXP A;  4Z69 A;  2LXT A;  4FK5 B;  4OTU A;  4K71 A;  5ID7 A;  1LOT A;  3A75 A;  4W4U B;  2OT3 A;  4L8U A;  2BX8 A;  2KBZ A;  2XVV A;  3B9M A;  3CX9 A;  3WHR A;  2BXL A;  2QHB A;  4G04 A;  3SIV B;  4I9O A;  2JUH A;  2BXB A;  2BXD A;  4F5T A;  5FUO A;  5IIH A;  1E7G A;  1MIW A;  1N5U A;  2NNW A;  2BXE A;  3WHS A;  3A73 A;  2BXN A;  1J78 A;  3SQJ A;  3LU8 A;  2QM6 A;  4K2C A;  2BXK A;  1E7C A;  2DYO A;  2LQH A;  4F5U A;  5IIU A;  1E7I A;  2QMC A;  3MHH B;  4TQ1 A;  2BXA A;  4D7X A;  4GDL B;  4F5S A;  4OTT A;  2AJE A;  3GA9 L;  2V36 A;  3MHS B;  2XW0 A;  4FJC B;  2LOQ A;  4MBE C;  1TF0 A;  1E7A A;  1HK3 A;  2K0N A;  3GQU A;  4OR0 A;  3LU6 A;  5IJ5 A;  2GUT A;  3VQI A;  2LQI A;  4TQ0 A;  4BKE A;  5D7G A;  1BJ5 A;  1HK4 A;  5GIP A;  4IW2 A;  4OT2 A;  2DG5 A;  2BXO A;  1E78 A;  2DYM A;  1AO6 A;  3BPJ A;  2XSI A;  2BXH A;  2EFC A;  1NT2 B;  3ICX A;  1MUS A;  1HK2 A;  4E99 A;  5B5T A;  1KW2 A;  1HA2 A;  1MIY A;  2BXG A;  4ZBR A;  1VFI A;  3JRY A;  5IIX A;  4N0F D;  2VUF A;  3FWC C;  3GQX A;  2E0Y A;  3TDL A;  5BPK A;  5IFO A;  5IJF A;  2I2Z A;  1J7E A;  4LUF A;  4GG2 A;  4WA6 B;  2BXM A;  1GNJ A;  3PLA A;  1E7B A;  1O9X A;  1KXP D;  2AGH B;  3UIV A;  2EFD A;  1GNI A;  3B9L A;  4J2V A;  3NVI A;  3SIU B;  1MA9 A;  3W1S A;  3LU7 A;  1KDX A;  1LNS A;  1BKE A;  4G03 A;  5IJE A;  1SB0 A;  2ROH A;  5GIO A;  2XVW A;  2BXF A;  1E7E A;  1JNB A;  2CKX A;  3FNM A;  4G01 A;  4LB9 A;  4LB2 A;  5GIN A;  5HOZ A;  4LUH A;  4BY9 C;  2Z8K A;  2Z8I A;  4ZCG A;  4ZBQ A;  4JK4 A;  2EFH A;  4M70 B;  3G9K D;  4PO0 A;  4HGM B;  4Z9O A;  4N0U D;  2XW1 A;  4DM0 A;  3V08 A;  5GHK A;  3FWB C;  3NVM A;  4GDK B;  2XVQ A;  3KJL A;  2XVU A;  4L9Q A;  2DBU A;  3V09 A;  2OZB B;  4EMX A;  5DQF A;  4DHX B; 
#chains in the Genus database with same CATH homology
 4N3Z A;  2DBX A;  1IJG A;  3KIK A;  5DBY A;  3WHQ A;  4FIP B;  3M99 C;  3NMU A;  1BM0 A;  4C31 B;  3V03 A;  3JQZ A;  1H9Z A;  1HK1 A;  4ZBK A;  1TXU A;  4NAW B;  4L9K A;  2I30 A;  5ID9 A;  4ZUX V;  2BXI A;  2DBW A;  1VZS A;  2YDF A;  3H37 A;  1E7F A;  2EFE A;  2BXQ A;  2VDB A;  4LA0 A;  1MIV A;  2BXC A;  1FOU A;  4F5V A;  4GDX A;  2VUE A;  1H5W A;  1HK5 A;  2XMO A;  2E0X A;  4S1Y A;  1UOR A;  3NVK A;  2NQO A;  3H3A A;  4IW1 A;  1E7H A;  4HGK A;  2Z8J A;  4ZC6 A;  2BXP A;  4Z69 A;  4FK5 B;  4OTU A;  4K71 A;  5ID7 A;  1LOT A;  3A75 A;  4W4U B;  2OT3 A;  4L8U A;  2BX8 A;  2KBZ A;  2XVV A;  3B9M A;  3CX9 A;  3WHR A;  2BXL A;  2QHB A;  4G04 A;  3SIV B;  2JUH A;  2BXB A;  2BXD A;  4F5T A;  5FUO A;  5IIH A;  1E7G A;  1MIW A;  1N5U A;  2NNW A;  2BXE A;  3WHS A;  3A73 A;  2BXN A;  1J78 A;  3SQJ A;  3LU8 A;  2QM6 A;  4K2C A;  2BXK A;  1E7C A;  2DYO A;  4F5U A;  5IIU A;  1E7I A;  2QMC A;  3MHH B;  4TQ1 A;  2BXA A;  4GDL B;  4F5S A;  4OTT A;  2AJE A;  3GA9 L;  2V36 A;  3MHS B;  2XW0 A;  4FJC B;  2LOQ A;  4MBE C;  1TF0 A;  1E7A A;  1HK3 A;  3GQU A;  4OR0 A;  5IJ5 A;  3LU6 A;  3VQI A;  4TQ0 A;  4BKE A;  5D7G A;  1BJ5 A;  1HK4 A;  5GIP A;  4IW2 A;  4OT2 A;  2DG5 A;  2BXO A;  1E78 A;  2DYM A;  1AO6 A;  2XSI A;  2BXH A;  2EFC A;  1NT2 B;  3ICX A;  1HK2 A;  4E99 A;  5B5T A;  1KW2 A;  1HA2 A;  1MIY A;  2BXG A;  4ZBR A;  1VFI A;  3JRY A;  5IIX A;  4N0F D;  2VUF A;  3FWC C;  3GQX A;  2E0Y A;  3TDL A;  5BPK A;  5IFO A;  5IJF A;  2I2Z A;  1J7E A;  4LUF A;  4GG2 A;  4WA6 B;  2BXM A;  1GNJ A;  3PLA A;  1E7B A;  1O9X A;  1KXP D;  3NVI A;  3UIV A;  2EFD A;  1GNI A;  3B9L A;  4J2V A;  3SIU B;  1MA9 A;  3W1S A;  3LU7 A;  1LNS A;  1BKE A;  4G03 A;  5IJE A;  2ROH A;  5GIO A;  2XVW A;  2BXF A;  1E7E A;  1JNB A;  2CKX A;  3FNM A;  4G01 A;  4LB9 A;  4LB2 A;  5GIN A;  5HOZ A;  4LUH A;  4BY9 C;  2Z8K A;  2Z8I A;  4ZCG A;  4ZBQ A;  4JK4 A;  2EFH A;  4M70 B;  3G9K D;  4PO0 A;  4HGM B;  4Z9O A;  4N0U D;  2XW1 A;  3V08 A;  5GHK A;  3FWB C;  3NVM A;  4GDK B;  2XVQ A;  3KJL A;  2XVU A;  4L9Q A;  2DBU A;  3V09 A;  2OZB B;  4EMX A;  5DQF A;  4DHX B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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