2P0TA

Structural genomics, the crystal structure of a conserved putative protein from pseudomonas syringae pv. tomato str. dc3000
Total Genus 62
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
62
sequence length
148
structure length
148
Chain Sequence
LHALVDLGERLTTLKADVLAKLPLTDALRKALAEAPKHTANIARKRHILFIGKLMRDQDQEAILVLLDQLDASTRQYNERFHNLERWRDRLIAGDDADLEKFVIEYPDADRQQLRSLIRQAQHEVARNKPPATSRKIFKYIRELDELQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural genomics, unknown function
molecule keywords UPF0307 protein PSPTO_4464
publication title The crystal structure of a conserved putative protein from Pseudomonas syringae pv. tomato str. DC3000
rcsb
source organism Pseudomonas syringae pv. tomato
total genus 62
structure length 148
sequence length 148
ec nomenclature
pdb deposition date 2007-03-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04751 DUF615 Protein of unknown function (DUF615)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.60.30 Mainly Alpha Orthogonal Bundle Diphtheria Toxin Repressor; domain 2 PSPTO4464-like domains 2p0tA01
1.10.60.30 Mainly Alpha Orthogonal Bundle Diphtheria Toxin Repressor; domain 2 PSPTO4464-like domains 2p0tA02
2P0TA
chains in the Genus database with same CATH superfamily
4O6JA 1RQ6A 2F5DA 2X98A 2QQ9A 2F5FA 1DDNA 2ISZA 5FLXR 2MUNA 2HYFA 2H09A 5IT9R 4HX8A 4HX7A 1BI1A 2F5CA 1ON2A 3JAMR 4O5VA 2MZ4A 3J80R 1C0WA 2EV5A 2HYGD 4HV6A 5A2QR 3J7AW 4HV5A 1F5TA 3R61A 3A52A 2MVTA 1DPRA 2EV0A 2P0TA 3R60A 1FWZA 3GLXA 2F5EA 2M35A 1FX7A 1P92A 1B1BA 1BI2A 1BI0A 2TDXA 4HX4A 1G3YA 2EV6A 1G3SA 1ON1A 2QQBA 3J81R 1G3TA 2QQAA 1U8RA 1BI3A 1G3WA 1XCVA 2DTRA
chains in the Genus database with same CATH topology
2P0TA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2P0T A; 
#chains in the Genus database with same CATH topology
 4O6J A;  1RQ6 A;  2F5D A;  2X98 A;  2QQ9 A;  2F5F A;  1DDN A;  2ISZ A;  5FLX R;  2MUN A;  2HYF A;  2H09 A;  5IT9 R;  4HX8 A;  4HX7 A;  1BI1 A;  2F5C A;  1ON2 A;  3JAM R;  4O5V A;  2MZ4 A;  3J80 R;  1C0W A;  2EV5 A;  2HYG D;  4HV6 A;  5A2Q R;  3J7A W;  4HV5 A;  1F5T A;  3R61 A;  3A52 A;  2MVT A;  1DPR A;  2EV0 A;  2P0T A;  3R60 A;  1FWZ A;  3GLX A;  2F5E A;  2M35 A;  1FX7 A;  1P92 A;  1B1B A;  1BI2 A;  1BI0 A;  2TDX A;  4HX4 A;  1G3Y A;  2EV6 A;  1G3S A;  1ON1 A;  2QQB A;  3J81 R;  1G3T A;  2QQA A;  1U8R A;  1BI3 A;  1G3W A;  1XCV A;  2DTR A; 
#chains in the Genus database with same CATH homology
 2P0T A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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