2P1QA

Mechanism of auxin perception by the tir1 ubiquitin ligase
Total Genus 38
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
38
sequence length
156
structure length
124
Chain Sequence
KIVLKSSDGESFEVEEAVALESQTIAHMVDNGVPLPNVTSKILAKVIEYCKRHFMKIDQATLFELILAANYLNIKNLLDLTCQTVADMIKGKTPEEIRTTFNIKNDFTPEEEEEVRRENQWAFE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Signaling protein
molecule keywords SKP1-like protein 1A
publication title Mechanism of auxin perception by the TIR1 ubiquitin ligase.
pubmed doi rcsb
source organism Arabidopsis thaliana
total genus 38
structure length 124
sequence length 156
ec nomenclature
pdb deposition date 2007-03-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01466 Skp1 Skp1 family, dimerisation domain
A PF03931 Skp1_POZ Skp1 family, tetramerisation domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.710.10 Alpha Beta 2-Layer Sandwich Potassium Channel Kv1.1; Chain A Potassium Channel Kv1.1; Chain A 2p1qA00
1EXBE 3L2OA 3M5BA 3ZRCB 1S1GA 2C9WC 5HYWB 4AWJB 4BKTB 4HXIA 2P1NA 3ZTDB 4B9KB 1QDVA 2OVQA 5DADA 3OHUA 4B9KE 3HVEB 5DAFA 3E4UA 4CXIA 1EOFA 3B84A 1A68A 2YY9A 4W9KB 3HVEA 1QDWA 3C6PA 4ZOUA 1HV2A 1BUOA 4BGCA 4JGHC 2Z8HA 3OHVA 5IBKA 3HU6A 2VKPA 5A6RA 3OGLA 3KVTA 2P1PA 4W9JB 5LLIB 3HQIA 1R28A 2IHCA 2NN2A 3M8VA 4W9FB 3BIMA 5BXBA 1T1DA 5BO4C 4N9F5 4BKSB 2R9RB 4UIJA 2E32B 1CS3A 2P1OA 1EOEA 4UYIA 3WSOB 4B95B 3I3NA 4CXTA 4W9EB 2OVRA 2A79B 4JTCB 4W9LB 5HZGC 2FNJC 3ZKJB 2IF5A 3ZTCB 5BXHA 5H7GA 3ZUNB 4I6JC 4U2NA 4APFA 3DCGB 3FKCA 2I2RA 3HTMA 4EOZA 3LUTB 3C6NA 4AP2A 3M4TA 5H7HA 5JH5B 2P1QA 1FS2B 1LQBB 4CRHA 3GA1A 1DSXA 4J8ZA 5EUPA 4JTDB 4CP3A 5BXDA 2ASSA 4AJYC 2ASTA 1VCBB 3ZNGB 4W9HH 4W9HB 4W9GB 4CXJA 4U77A 4W9CB 1EODA 2IZVC 3V7DA 1P22B 3ZRFB 1NN7A 3M52A 4JTAB 1FS1B 1FQVB 2P1MA 1NEXA 4U2MA 1LDKD 2Q81A 5FTAA 2VPKA 3OGMA 2E31B 4W9IB 2MA9C 3OGKA 3LBZA 5A15A 4WQOC 4W9DB 1R29A 2PPIA 3LNMB 3DRZA 2OVPA 1R2BA 3C6OA 1LM8C 2JZ3C 2NZ0B 3MKSA
chains in the Genus database with same CATH superfamily
1EXBE 3L2OA 3M5BA 3ZRCB 1S1GA 2C9WC 5HYWB 4AWJB 4BKTB 4HXIA 2P1NA 3ZTDB 4B9KB 1QDVA 2OVQA 5DADA 3DRXA 3OHUA 4B9KE 3HVEB 5DAFA 3DRYA 3E4UA 4CXIA 1EOFA 3B84A 1A68A 2YY9A 4W9KB 3HVEA 1QDWA 3C6PA 4ZOUA 1HV2A 1BUOA 4BGCA 4JGHC 2Z8HA 3OHVA 5IBKA 3HU6A 2VKPA 5A6RA 3OGLA 3KVTA 2P1PA 4W9JB 5LLIB 3HQIA 1R28A 2IHCA 2NN2A 3M8VA 4ZGCA 4W9FB 3BIMA 5BXBA 1T1DA 5BO4C 4N9F5 4BKSB 2R9RB 4UIJA 2E32B 1CS3A 2P1OA 1EOEA 4UYIA 3WSOB 4B95B 3I3NA 4CXTA 4W9EB 2OVRA 2A79B 4JTCB 4W9LB 5HZGC 2FNJC 3ZKJB 2IF5A 3ZTCB 5BXHA 5H7GA 3ZUNB 4I6JC 4U2NA 4APFA 3DCGB 3FKCA 2I2RA 3HTMA 4EOZA 3LUTB 3C6NA 4AP2A 3M4TA 5H7HA 5JH5B 2P1QA 1FS2B 1LQBB 4CRHA 3GA1A 1DSXA 4J8ZA 5EUPA 4JTDB 4CP3A 5BXDA 2ASSA 4AJYC 2ASTA 1VCBB 3ZNGB 4W9HH 4W9HB 4W9GB 4CXJA 4U77A 4W9CB 1EODA 2IZVC 3V7DA 1P22B 3ZRFB 1NN7A 3M52A 4JTAB 1FS1B 1FQVB 2P1MA 1NEXA 4U2MA 1LDKD 2Q81A 5FTAA 2VPKA 3OGMA 2E31B 4W9IB 2MA9C 3OGKA 3LBZA 5A15A 4WQOC 4W9DB 1R29A 2PPIA 3LNMB 3DRZA 2OVPA 1R2BA 3C6OA 1LM8C 2JZ3C 2NZ0B 3MKSA 4YY8A
chains in the Genus database with same CATH topology
1EXBE 3L2OA 3M5BA 3ZRCB 1S1GA 2C9WC 5HYWB 4AWJB 4BKTB 4HXIA 2P1NA 3ZTDB 4B9KB 1QDVA 2OVQA 5DADA 3DRXA 3OHUA 4B9KE 3HVEB 5DAFA 3DRYA 3E4UA 4CXIA 1EOFA 3B84A 1A68A 2YY9A 4W9KB 3HVEA 1QDWA 3C6PA 4ZOUA 1HV2A 1BUOA 4BGCA 4JGHC 2Z8HA 3OHVA 5IBKA 3HU6A 2VKPA 5A6RA 3OGLA 3KVTA 2P1PA 4W9JB 5LLIB 3HQIA 1R28A 2IHCA 2NN2A 3M8VA 4ZGCA 4W9FB 3BIMA 5BXBA 1T1DA 5BO4C 4N9F5 4BKSB 2R9RB 4UIJA 2E32B 1CS3A 2P1OA 1EOEA 4UYIA 3WSOB 4B95B 3I3NA 4CXTA 4W9EB 2OVRA 2A79B 4JTCB 4W9LB 5HZGC 2FNJC 3ZKJB 2IF5A 3ZTCB 5BXHA 5H7GA 3ZUNB 4I6JC 4U2NA 4APFA 3DCGB 3FKCA 2I2RA 3HTMA 4EOZA 3LUTB 3C6NA 4AP2A 3M4TA 5H7HA 5JH5B 2P1QA 1FS2B 1LQBB 4CRHA 3GA1A 1DSXA 4J8ZA 5EUPA 4JTDB 4CP3A 5BXDA 2ASSA 4AJYC 2ASTA 1VCBB 3ZNGB 4W9HH 4W9HB 4W9GB 4CXJA 4U77A 4W9CB 1EODA 2IZVC 3V7DA 1P22B 3ZRFB 1NN7A 3M52A 4JTAB 1FS1B 1FQVB 2P1MA 1NEXA 4U2MA 1LDKD 2Q81A 5FTAA 2VPKA 3OGMA 2E31B 4W9IB 2MA9C 3OGKA 3LBZA 5A15A 4WQOC 4W9DB 1R29A 2PPIA 3LNMB 3DRZA 2OVPA 1R2BA 3C6OA 1LM8C 2JZ3C 2NZ0B 3MKSA 4YY8A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1EXB E;  3L2O A;  3M5B A;  3ZRC B;  1S1G A;  2C9W C;  5HYW B;  4AWJ B;  4BKT B;  4HXI A;  2P1N A;  3ZTD B;  4B9K B;  1QDV A;  2OVQ A;  5DAD A;  3OHU A;  4B9K E;  3HVE B;  5DAF A;  3E4U A;  4CXI A;  1EOF A;  3B84 A;  1A68 A;  2YY9 A;  4W9K B;  3HVE A;  1QDW A;  3C6P A;  4ZOU A;  1HV2 A;  1BUO A;  4BGC A;  4JGH C;  2Z8H A;  3OHV A;  5IBK A;  3HU6 A;  2VKP A;  5A6R A;  3OGL A;  3KVT A;  2P1P A;  4W9J B;  5LLI B;  3HQI A;  1R28 A;  2IHC A;  2NN2 A;  3M8V A;  4W9F B;  3BIM A;  5BXB A;  1T1D A;  5BO4 C;  4N9F 5;  4BKS B;  2R9R B;  4UIJ A;  2E32 B;  1CS3 A;  2P1O A;  1EOE A;  4UYI A;  3WSO B;  4B95 B;  3I3N A;  4CXT A;  4W9E B;  2OVR A;  2A79 B;  4JTC B;  4W9L B;  5HZG C;  2FNJ C;  3ZKJ B;  2IF5 A;  3ZTC B;  5BXH A;  5H7G A;  3ZUN B;  4I6J C;  4U2N A;  4APF A;  3DCG B;  3FKC A;  2I2R A;  3HTM A;  4EOZ A;  3LUT B;  3C6N A;  4AP2 A;  3M4T A;  5H7H A;  5JH5 B;  2P1Q A;  1FS2 B;  1LQB B;  4CRH A;  3GA1 A;  1DSX A;  4J8Z A;  5EUP A;  4JTD B;  4CP3 A;  5BXD A;  2ASS A;  4AJY C;  2AST A;  1VCB B;  3ZNG B;  4W9H H;  4W9H B;  4W9G B;  4CXJ A;  4U77 A;  4W9C B;  1EOD A;  2IZV C;  3V7D A;  1P22 B;  3ZRF B;  1NN7 A;  3M52 A;  4JTA B;  1FS1 B;  1FQV B;  2P1M A;  1NEX A;  4U2M A;  1LDK D;  2Q81 A;  5FTA A;  2VPK A;  3OGM A;  2E31 B;  4W9I B;  2MA9 C;  3OGK A;  3LBZ A;  5A15 A;  4WQO C;  4W9D B;  1R29 A;  2PPI A;  3LNM B;  3DRZ A;  2OVP A;  1R2B A;  3C6O A;  1LM8 C;  2JZ3 C;  2NZ0 B;  3MKS A; 
#chains in the Genus database with same CATH topology
 1EXB E;  3L2O A;  3M5B A;  3ZRC B;  1S1G A;  2C9W C;  5HYW B;  4AWJ B;  4BKT B;  4HXI A;  2P1N A;  3ZTD B;  4B9K B;  1QDV A;  2OVQ A;  5DAD A;  3DRX A;  3OHU A;  4B9K E;  3HVE B;  5DAF A;  3DRY A;  3E4U A;  4CXI A;  1EOF A;  3B84 A;  1A68 A;  2YY9 A;  4W9K B;  3HVE A;  1QDW A;  3C6P A;  4ZOU A;  1HV2 A;  1BUO A;  4BGC A;  4JGH C;  2Z8H A;  3OHV A;  5IBK A;  3HU6 A;  2VKP A;  5A6R A;  3OGL A;  3KVT A;  2P1P A;  4W9J B;  5LLI B;  3HQI A;  1R28 A;  2IHC A;  2NN2 A;  3M8V A;  4ZGC A;  4W9F B;  3BIM A;  5BXB A;  1T1D A;  5BO4 C;  4N9F 5;  4BKS B;  2R9R B;  4UIJ A;  2E32 B;  1CS3 A;  2P1O A;  1EOE A;  4UYI A;  3WSO B;  4B95 B;  3I3N A;  4CXT A;  4W9E B;  2OVR A;  2A79 B;  4JTC B;  4W9L B;  5HZG C;  2FNJ C;  3ZKJ B;  2IF5 A;  3ZTC B;  5BXH A;  5H7G A;  3ZUN B;  4I6J C;  4U2N A;  4APF A;  3DCG B;  3FKC A;  2I2R A;  3HTM A;  4EOZ A;  3LUT B;  3C6N A;  4AP2 A;  3M4T A;  5H7H A;  5JH5 B;  2P1Q A;  1FS2 B;  1LQB B;  4CRH A;  3GA1 A;  1DSX A;  4J8Z A;  5EUP A;  4JTD B;  4CP3 A;  5BXD A;  2ASS A;  4AJY C;  2AST A;  1VCB B;  3ZNG B;  4W9H H;  4W9H B;  4W9G B;  4CXJ A;  4U77 A;  4W9C B;  1EOD A;  2IZV C;  3V7D A;  1P22 B;  3ZRF B;  1NN7 A;  3M52 A;  4JTA B;  1FS1 B;  1FQV B;  2P1M A;  1NEX A;  4U2M A;  1LDK D;  2Q81 A;  5FTA A;  2VPK A;  3OGM A;  2E31 B;  4W9I B;  2MA9 C;  3OGK A;  3LBZ A;  5A15 A;  4WQO C;  4W9D B;  1R29 A;  2PPI A;  3LNM B;  3DRZ A;  2OVP A;  1R2B A;  3C6O A;  1LM8 C;  2JZ3 C;  2NZ0 B;  3MKS A;  4YY8 A; 
#chains in the Genus database with same CATH homology
 1EXB E;  3L2O A;  3M5B A;  3ZRC B;  1S1G A;  2C9W C;  5HYW B;  4AWJ B;  4BKT B;  4HXI A;  2P1N A;  3ZTD B;  4B9K B;  1QDV A;  2OVQ A;  5DAD A;  3DRX A;  3OHU A;  4B9K E;  3HVE B;  5DAF A;  3DRY A;  3E4U A;  4CXI A;  1EOF A;  3B84 A;  1A68 A;  2YY9 A;  4W9K B;  3HVE A;  1QDW A;  3C6P A;  4ZOU A;  1HV2 A;  1BUO A;  4BGC A;  4JGH C;  2Z8H A;  3OHV A;  5IBK A;  3HU6 A;  2VKP A;  5A6R A;  3OGL A;  3KVT A;  2P1P A;  4W9J B;  5LLI B;  3HQI A;  1R28 A;  2IHC A;  2NN2 A;  3M8V A;  4ZGC A;  4W9F B;  3BIM A;  5BXB A;  1T1D A;  5BO4 C;  4N9F 5;  4BKS B;  2R9R B;  4UIJ A;  2E32 B;  1CS3 A;  2P1O A;  1EOE A;  4UYI A;  3WSO B;  4B95 B;  3I3N A;  4CXT A;  4W9E B;  2OVR A;  2A79 B;  4JTC B;  4W9L B;  5HZG C;  2FNJ C;  3ZKJ B;  2IF5 A;  3ZTC B;  5BXH A;  5H7G A;  3ZUN B;  4I6J C;  4U2N A;  4APF A;  3DCG B;  3FKC A;  2I2R A;  3HTM A;  4EOZ A;  3LUT B;  3C6N A;  4AP2 A;  3M4T A;  5H7H A;  5JH5 B;  2P1Q A;  1FS2 B;  1LQB B;  4CRH A;  3GA1 A;  1DSX A;  4J8Z A;  5EUP A;  4JTD B;  4CP3 A;  5BXD A;  2ASS A;  4AJY C;  2AST A;  1VCB B;  3ZNG B;  4W9H H;  4W9H B;  4W9G B;  4CXJ A;  4U77 A;  4W9C B;  1EOD A;  2IZV C;  3V7D A;  1P22 B;  3ZRF B;  1NN7 A;  3M52 A;  4JTA B;  1FS1 B;  1FQV B;  2P1M A;  1NEX A;  4U2M A;  1LDK D;  2Q81 A;  5FTA A;  2VPK A;  3OGM A;  2E31 B;  4W9I B;  2MA9 C;  3OGK A;  3LBZ A;  5A15 A;  4WQO C;  4W9D B;  1R29 A;  2PPI A;  3LNM B;  3DRZ A;  2OVP A;  1R2B A;  3C6O A;  1LM8 C;  2JZ3 C;  2NZ0 B;  3MKS A;  4YY8 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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