2P2RA

Crystal structure of the third kh domain of human poly(c)-binding protein-2 in complex with c-rich strand of human telomeric dna
Total Genus 21
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
21
sequence length
73
structure length
73
Chain Sequence
QTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLSSE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Rna and dna binding protein/dna
molecule keywords C-rich strand of human telomeric DNA
publication title Crystal structure of the third KH domain of human poly(C)-binding protein-2 in complex with a C-rich strand of human telomeric DNA at 1.6 A resolution.
pubmed doi rcsb
source organism Homo sapiens
total genus 21
structure length 73
sequence length 73
ec nomenclature
pdb deposition date 2007-03-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00013 KH_1 KH domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1370.10 Alpha Beta 2-Layer Sandwich Ribosomal Protein S8; Chain: A, domain 1 K Homology domain, type 1 2p2rA00
2HH3A 2YQRA 2CTLA 2ANRA 1ZTGA 2FMRA 1VIGA 1ZZKA 1DT4A 3VKEA 2CTFA 3V69A 2BA0A 4LIJA 2CPQA 2DGRA 5K36G 1ZZIA 2Z0SA 4IFDG 2JVZA 1WVNA 5C0XG 4BA1I 2OPUA 2JA9A 4QMFB 2QNDA 4NBQA 2JE6I 2AXYA 2CTKA 2ANNA 2CTEA 3AEVB 4WANA 4B8TA 2P2RA 2MJHA 4BA2I 4JVYA 1K1GA 2PQUA 1X4NA 3U1KA 1ZZJA 1J4WA 2PY9A 1X4MA 5JEAG 1KHMA 2HH2A 2JZXA 2BL5A 1EC6A 1WE8A 2CTJA 1VIHA 2CTMA 2JEBI 2JEAI 4JVHA 4WALA 2NN6G 3L7ZC 1J5KA 4AIMA 4OO1G 1TUAA 2E3UA 2OPVA 4AM3A 1DTJA
chains in the Genus database with same CATH superfamily
2FPHX 2YQRA 2ZQEA 3GKUA 3JAMW 4DR5H 2PT7G 1ODHA 1ZTGA 2E5LH 4DR7H 1Z2IA 2CTFA 4DR6H 4DV7H 3QD7X 1PQXA 2CWFA 2Z0SA 5BR8H 4JI6H 3EZJA 1WHRA 2JVZA 3T1YH 3T1HH 2ZM6H 3FAUA 4DV2H 2Y3MA 1S20A 1S03G 5LL6b 2A1SA 4NBQA 1UG8A 1XMOH 2JE6I 2AXYA 2ANNA 4AQYH 4B3RH 1HNXH 4NXNH 2P2RA 1VBIA 1FJGH 3J80W 2K1HA 4YY3H 2PY9A 4LF5H 2VKCA 1X4MA 4OX9H 1IBMH 2HH2A 3SB1A 2BL5A 4B3TH 1WE8A 2CTJA 2LRRA 2LTMA 4LFAH 1SEIA 2M6QA 2HHHH 4JI5H 3L7ZC 4GKJH 5LMUH 2E3UA 2FFMA 4AIMA 5IWAH 1NXUA 4DUZH 4JI8H 2VQEH 2CTLA 4X62H 2UXCH 2FMRA 4JYAH 4LF8H 3NCVA 2CPQA 4OD6A 4B3MH 1IBKH 4DR1H 1X9ZA 1N34H 4DUYH 4LFCH 4H8AA 5C0XG 4EC5A 2JA9A 2QNDA 4JI1H 2CTKA 2UUAH 3UOEA 2CTEA 3KDKA 4B8CD 1IBLH 4DV1H 1K1GA 2F4VH 1J5EH 3U1KA 3J7AK 4NXMH 1KHMA 1X0AA 4LFBH 2JEAI 2CTMA 1WTJA 1N32H 2UXBH 2LF0A 4X66H 2UUCH 4OO1G 4JI3H 4DV6H 4DR4H 4E9JA 1XNQH 1VIGA 1ZZKA 3VKEA 4JI7H 2G8YA 2BA0A 4LIJA 2DGRA 4DV4H 4GKKH 1ZZIA 4X65H 5K36G 4OCHA 4KHPH 3I0PA 4BA1I 1N33H 4QMFB 4DR3H 1XMQH 2O4CA 2CWHA 2CPMA 1XRHA 4B8TA 2MJHA 4DV3H 4BA2I 3J81W 3GR5A 1ZZJA 1J4WA 2UXDH 1V8CA 5JEAG 1N36H 1HNWH 2JZXA 3GABA 1VIHA 4JV5H 4LF7H 4LF9H 2NN6G 1J5KA 5DT9A 3RF2A 1TUAA 1HNZH 2UU9H 2X06A 4YHHH 4LF4H 4AM3A 4JI4H 4PDBA 2HH3A 1XNRH 2ANRA 2VQFH 1F0XA 1DT4A 1FKAH 5A2QW 1HR0H 2UUBH 3V69A 1I6UA 4K0KH 4DV5H 4G08A 4IFDG 4NZTM 1WVNA 5FLXW 2OPUA 4JI0H 4FJSA 1MSZA 3AEVB 3OSSD 4NZRM 4WANA 5IT9W 4FJUA 4JVYA 2PQUA 1X4NA 2M8WA 2LTLA 4DR2H 1EC6A 2D9IA 5LMNH 2JEBI 4B3SH 4JVHA 4WALA 3KDGA 4JI2H 1V9NA 1I94H 4LF6H 3OETA 4DV0H 3OTOH 4X64H 1AN7A 2OPVA 1DTJA
chains in the Genus database with same CATH topology
2HH3A 2YQRA 2CTLA 2ANRA 1ZTGA 2FMRA 1VIGA 1ZZKA 1DT4A 3VKEA 2CTFA 3V69A 2BA0A 4LIJA 2CPQA 2DGRA 5K36G 1ZZIA 2Z0SA 4IFDG 2JVZA 1WVNA 5C0XG 4BA1I 2OPUA 2JA9A 4QMFB 2QNDA 4NBQA 2JE6I 2AXYA 2CTKA 2ANNA 2CTEA 3AEVB 4WANA 4B8TA 2P2RA 2MJHA 4BA2I 4JVYA 1K1GA 2PQUA 1X4NA 3U1KA 1ZZJA 1J4WA 2PY9A 1X4MA 5JEAG 1KHMA 2HH2A 2JZXA 2BL5A 1EC6A 1WE8A 2CTJA 1VIHA 2CTMA 2JEBI 2JEAI 4JVHA 4WALA 2NN6G 3L7ZC 1J5KA 4AIMA 4OO1G 1TUAA 2E3UA 2OPVA 4AM3A 1DTJA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2HH3 A;  2YQR A;  2CTL A;  2ANR A;  1ZTG A;  2FMR A;  1VIG A;  1ZZK A;  1DT4 A;  3VKE A;  2CTF A;  3V69 A;  2BA0 A;  4LIJ A;  2CPQ A;  2DGR A;  5K36 G;  1ZZI A;  2Z0S A;  4IFD G;  2JVZ A;  1WVN A;  5C0X G;  4BA1 I;  2OPU A;  2JA9 A;  4QMF B;  2QND A;  4NBQ A;  2JE6 I;  2AXY A;  2CTK A;  2ANN A;  2CTE A;  3AEV B;  4WAN A;  4B8T A;  2P2R A;  2MJH A;  4BA2 I;  4JVY A;  1K1G A;  2PQU A;  1X4N A;  3U1K A;  1ZZJ A;  1J4W A;  2PY9 A;  1X4M A;  5JEA G;  1KHM A;  2HH2 A;  2JZX A;  2BL5 A;  1EC6 A;  1WE8 A;  2CTJ A;  1VIH A;  2CTM A;  2JEB I;  2JEA I;  4JVH A;  4WAL A;  2NN6 G;  3L7Z C;  1J5K A;  4AIM A;  4OO1 G;  1TUA A;  2E3U A;  2OPV A;  4AM3 A;  1DTJ A; 
#chains in the Genus database with same CATH topology
 2FPH X;  2YQR A;  2ZQE A;  3GKU A;  3JAM W;  4DR5 H;  2PT7 G;  1ODH A;  1ZTG A;  2E5L H;  4DR7 H;  1Z2I A;  2CTF A;  4DR6 H;  4DV7 H;  3QD7 X;  1PQX A;  2CWF A;  2Z0S A;  5BR8 H;  4JI6 H;  3EZJ A;  1WHR A;  2JVZ A;  3T1Y H;  3T1H H;  2ZM6 H;  3FAU A;  4DV2 H;  2Y3M A;  1S20 A;  1S03 G;  5LL6 b;  2A1S A;  4NBQ A;  1UG8 A;  1XMO H;  2JE6 I;  2AXY A;  2ANN A;  4AQY H;  4B3R H;  1HNX H;  4NXN H;  2P2R A;  1VBI A;  1FJG H;  3J80 W;  2K1H A;  4YY3 H;  2PY9 A;  4LF5 H;  2VKC A;  1X4M A;  4OX9 H;  1IBM H;  2HH2 A;  3SB1 A;  2BL5 A;  4B3T H;  1WE8 A;  2CTJ A;  2LRR A;  2LTM A;  4LFA H;  1SEI A;  2M6Q A;  2HHH H;  4JI5 H;  3L7Z C;  4GKJ H;  5LMU H;  2E3U A;  2FFM A;  4AIM A;  5IWA H;  1NXU A;  4DUZ H;  4JI8 H;  2VQE H;  2CTL A;  4X62 H;  2UXC H;  2FMR A;  4JYA H;  4LF8 H;  3NCV A;  2CPQ A;  4OD6 A;  4B3M H;  1IBK H;  4DR1 H;  1X9Z A;  1N34 H;  4DUY H;  4LFC H;  4H8A A;  5C0X G;  4EC5 A;  2JA9 A;  2QND A;  4JI1 H;  2CTK A;  2UUA H;  3UOE A;  2CTE A;  3KDK A;  4B8C D;  1IBL H;  4DV1 H;  1K1G A;  2F4V H;  1J5E H;  3U1K A;  3J7A K;  4NXM H;  1KHM A;  1X0A A;  4LFB H;  2JEA I;  2CTM A;  1WTJ A;  1N32 H;  2UXB H;  2LF0 A;  4X66 H;  2UUC H;  4OO1 G;  4JI3 H;  4DV6 H;  4DR4 H;  4E9J A;  1XNQ H;  1VIG A;  1ZZK A;  3VKE A;  4JI7 H;  2G8Y A;  2BA0 A;  4LIJ A;  2DGR A;  4DV4 H;  4GKK H;  1ZZI A;  4X65 H;  5K36 G;  4OCH A;  4KHP H;  3I0P A;  4BA1 I;  1N33 H;  4QMF B;  4DR3 H;  1XMQ H;  2O4C A;  2CWH A;  2CPM A;  1XRH A;  4B8T A;  2MJH A;  4DV3 H;  4BA2 I;  3J81 W;  3GR5 A;  1ZZJ A;  1J4W A;  2UXD H;  1V8C A;  5JEA G;  1N36 H;  1HNW H;  2JZX A;  3GAB A;  1VIH A;  4JV5 H;  4LF7 H;  4LF9 H;  2NN6 G;  1J5K A;  5DT9 A;  3RF2 A;  1TUA A;  1HNZ H;  2UU9 H;  2X06 A;  4YHH H;  4LF4 H;  4AM3 A;  4JI4 H;  4PDB A;  2HH3 A;  1XNR H;  2ANR A;  2VQF H;  1F0X A;  1DT4 A;  1FKA H;  5A2Q W;  1HR0 H;  2UUB H;  3V69 A;  1I6U A;  4K0K H;  4DV5 H;  4G08 A;  4IFD G;  4NZT M;  1WVN A;  5FLX W;  2OPU A;  4JI0 H;  4FJS A;  1MSZ A;  3AEV B;  3OSS D;  4NZR M;  4WAN A;  5IT9 W;  4FJU A;  4JVY A;  2PQU A;  1X4N A;  2M8W A;  2LTL A;  4DR2 H;  1EC6 A;  2D9I A;  5LMN H;  2JEB I;  4B3S H;  4JVH A;  4WAL A;  3KDG A;  4JI2 H;  1V9N A;  1I94 H;  4LF6 H;  3OET A;  4DV0 H;  3OTO H;  4X64 H;  1AN7 A;  2OPV A;  1DTJ A; 
#chains in the Genus database with same CATH homology
 2HH3 A;  2YQR A;  2CTL A;  2ANR A;  1ZTG A;  2FMR A;  1VIG A;  1ZZK A;  1DT4 A;  3VKE A;  2CTF A;  3V69 A;  2BA0 A;  4LIJ A;  2CPQ A;  2DGR A;  5K36 G;  1ZZI A;  2Z0S A;  4IFD G;  2JVZ A;  1WVN A;  5C0X G;  4BA1 I;  2OPU A;  2JA9 A;  4QMF B;  2QND A;  4NBQ A;  2JE6 I;  2AXY A;  2CTK A;  2ANN A;  2CTE A;  3AEV B;  4WAN A;  4B8T A;  2P2R A;  2MJH A;  4BA2 I;  4JVY A;  1K1G A;  2PQU A;  1X4N A;  3U1K A;  1ZZJ A;  1J4W A;  2PY9 A;  1X4M A;  5JEA G;  1KHM A;  2HH2 A;  2JZX A;  2BL5 A;  1EC6 A;  1WE8 A;  2CTJ A;  1VIH A;  2CTM A;  2JEB I;  2JEA I;  4JVH A;  4WAL A;  2NN6 G;  3L7Z C;  1J5K A;  4AIM A;  4OO1 G;  1TUA A;  2E3U A;  2OPV A;  4AM3 A;  1DTJ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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