2P5CA

Crystal structure of ph0725 from pyrococcus horikoshii ot3
Total Genus 80
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
80
sequence length
265
structure length
265
Chain Sequence
b'MVLYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQKLIGKEIRVLSREDVELNFENIVLPLAKENDVAFLTPGDPMVATTHAELRIRAKRAGVESYVIHAPSIYSAVGITGLHIYKFGKSATVAYPEGNWFPTSYYDVIKENAERGLHTLLFLDIKAEKRMYMTANEAMELLLKVEDMKKGGVFTDDTLVVVLARAGSLNPTIRAGYVKDLIREDFGDPPHILIVPGKLHIVEAEYLVEIAGAPREILRVNV'
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule keywords diphthine synthase
publication title Crystal structure of PH0725 from Pyrococcus horikoshii OT3
rcsb
source organism Pyrococcus horikoshii
molecule tags Transferase
total genus 80
structure length 265
sequence length 265
chains with identical sequence B
ec nomenclature ec 2.1.1.98: Diphthine synthase.
pdb deposition date 2007-03-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00590 TP_methylase Tetrapyrrole (Corrin/Porphyrin) Methylases
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.950.10 Alpha Beta 2-Layer Sandwich Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 2p5cA02
3.40.1010.10 Alpha Beta 3-Layer(aba) Sandwich Cobalt-precorrin-4 Transmethylase; domain 1 Cobalt-precorrin-4 Transmethylase; Domain 1 2p5cA01
3NDCA 1VHVA 2E4RA 2EK3A 2QBUA 2E4NA 2DV4A 1WNGA 2YBOA 2EGSA 2EHCA 2E8SA 2E0KA 2EJKA 2EMUA 2E08A 2HR8A 3NEIA 2OWFA 2EN5A 5HW4A 1PJQA 2EL1A 2EJJA 2E17A 2EMRA 2Z6RA 2PCAA 2DV3A 2E8QA 2PCHA 2P5FA 1WDEA 2PCIA 2DXVA 2EHLA 2E8HA 3KWPA 2OWGA 2DSGA 2OWKA 2EH4A 2OWVA 2BB3A 2HUQA 2PB6A 1VCEA 3FQ6A 2CBFA 2DSHA 2EEQA 2EJZA 2EH2A 2EL0A 2ELDA 2P6LA 2P6DA 2DV5A 2E15A 2ELEA 2PB4A 1PJSA 2YBQA 2DXXA 3FFYA 4E16A 2ED5A 2P5CA 3HH1A 1CBFA 2NPNA 1VA0A 2P9DA 1VE2A 2PB5A 2E16A 2E8RA 2HUVA 2P2XA 2E7RA 2EGLA 2HUTA 2P6KA 2P6IA 2EH5A 2EL3A 2DV7A 2EGBA 2EK7A 2DEKA 3I4TA 2ZVBA 2EK2A 1PJTA 2ENIA 2DSIA 1WYZA 2E07A 2EK4A 3NUTA 2PCKA 2HUXA 2PCGA 2EL2A 2DXWA 3ND1A 2OWUA 2E0NA 2ED3A 2EKAA 1S4DA 2ZVCA 1V9AA 2PCMA
chains in the Genus database with same CATH superfamily
3NDCA 3KE8A 1VHVA 2E4RA 2EK3A 2QBUA 2E4NA 2DV4A 1WNGA 3DNFA 2YBOA 2EGSA 2EHCA 2E8SA 2E0KA 2EJKA 2EMUA 2E08A 2HR8A 3UV3A 3NEIA 2OWFA 3KE9A 2EN5A 5HW4A 1PJQA 2EL1A 2EJJA 2E17A 2EMRA 3SZUA 2Z6RA 3UTDA 2PCAA 2DV3A 4N7BA 3UWMA 2KYYA 3URKA 4MV0A 3SZLA 2E8QA 2PCHA 2P5FA 1WDEA 2PCIA 2DXVA 2EHLA 2E8HA 3KWPA 2OWGA 4H4DA 2DSGA 2OWKA 2EH4A 2OWVA 2BB3A 2HUQA 2PB6A 3UTCA 1VCEA 3FQ6A 2CBFA 3UV7A 2DSHA 2EEQA 3T0FA 2EJZA 2EH2A 2EL0A 2ELDA 2P6LA 2P6DA 2DV5A 2E15A 2ELEA 2PB4A 1PJSA 2YBQA 2DXXA 3FFYA 4E16A 2ED5A 2P5CA 3KEMA 3ZGNA 3HH1A 1CBFA 2NPNA 1VA0A 2P9DA 4H4CA 1VE2A 2PB5A 2E16A 3TIXB 3T0GA 2E8RA 2HUVA 2P2XA 2E7RA 2EGLA 3LMMA 2HUTA 2P6KA 3SZOA 2P6IA 2EH5A 2EL3A 4MUXA 2DV7A 2EGBA 3KELA 2EK7A 2DEKA 3I4TA 2ZVBA 4EB3A 2EK2A 1PJTA 2ENIA 2DSIA 4MV5A 4MUYA 1WYZA 2E07A 2EK4A 3KEFA 3NUTA 2PCKA 2HUXA 2PCGA 2EL2A 3UV6A 3F7TA 3ZGLA 2DXWA 3ND1A 2OWUA 4H4EA 2E0NA 2ED3A 2EKAA 1S4DA 2ZVCA 1V9AA 2PCMA
chains in the Genus database with same CATH topology
3NDCA 3KE8A 1VHVA 2E4RA 2EK3A 2QBUA 2E4NA 2DV4A 1WNGA 3DNFA 2YBOA 2EGSA 2EHCA 2E8SA 2E0KA 2EJKA 2EMUA 2E08A 2HR8A 3UV3A 3NEIA 2OWFA 3KE9A 2EN5A 5HW4A 1PJQA 2EL1A 2EJJA 2E17A 2EMRA 3SZUA 2Z6RA 3UTDA 2PCAA 2DV3A 4N7BA 3UWMA 2KYYA 3URKA 4MV0A 3SZLA 2E8QA 2PCHA 2P5FA 1WDEA 2PCIA 2DXVA 2EHLA 2E8HA 3KWPA 2OWGA 4H4DA 2DSGA 2OWKA 2EH4A 2OWVA 2BB3A 2HUQA 2PB6A 3UTCA 1VCEA 3FQ6A 2CBFA 3UV7A 2DSHA 2EEQA 3T0FA 2EJZA 2EH2A 2EL0A 2ELDA 2P6LA 2P6DA 2DV5A 2E15A 2ELEA 2PB4A 1PJSA 2YBQA 2DXXA 3FFYA 4E16A 2ED5A 2P5CA 3KEMA 3ZGNA 3HH1A 1CBFA 2NPNA 1VA0A 2P9DA 4H4CA 1VE2A 2PB5A 2E16A 3TIXB 3T0GA 2E8RA 2HUVA 2P2XA 2E7RA 2EGLA 3LMMA 2HUTA 2P6KA 3SZOA 2P6IA 2EH5A 2EL3A 4MUXA 2DV7A 2EGBA 3KELA 2EK7A 2DEKA 3I4TA 2ZVBA 4EB3A 2EK2A 1PJTA 2ENIA 2DSIA 4MV5A 4MUYA 1WYZA 2E07A 2EK4A 3KEFA 3NUTA 2PCKA 2HUXA 2PCGA 2EL2A 3UV6A 3F7TA 3ZGLA 2DXWA 3ND1A 2OWUA 4H4EA 2E0NA 2ED3A 2EKAA 1S4DA 2ZVCA 1V9AA 2PCMA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3NDC A;  1VHV A;  2E4R A;  2EK3 A;  2QBU A;  2E4N A;  2DV4 A;  1WNG A;  2YBO A;  2EGS A;  2EHC A;  2E8S A;  2E0K A;  2EJK A;  2EMU A;  2E08 A;  2HR8 A;  3NEI A;  2OWF A;  2EN5 A;  5HW4 A;  1PJQ A;  2EL1 A;  2EJJ A;  2E17 A;  2EMR A;  2Z6R A;  2PCA A;  2DV3 A;  2E8Q A;  2PCH A;  2P5F A;  1WDE A;  2PCI A;  2DXV A;  2EHL A;  2E8H A;  3KWP A;  2OWG A;  2DSG A;  2OWK A;  2EH4 A;  2OWV A;  2BB3 A;  2HUQ A;  2PB6 A;  1VCE A;  3FQ6 A;  2CBF A;  2DSH A;  2EEQ A;  2EJZ A;  2EH2 A;  2EL0 A;  2ELD A;  2P6L A;  2P6D A;  2DV5 A;  2E15 A;  2ELE A;  2PB4 A;  1PJS A;  2YBQ A;  2DXX A;  3FFY A;  4E16 A;  2ED5 A;  2P5C A;  3HH1 A;  1CBF A;  2NPN A;  1VA0 A;  2P9D A;  1VE2 A;  2PB5 A;  2E16 A;  2E8R A;  2HUV A;  2P2X A;  2E7R A;  2EGL A;  2HUT A;  2P6K A;  2P6I A;  2EH5 A;  2EL3 A;  2DV7 A;  2EGB A;  2EK7 A;  2DEK A;  3I4T A;  2ZVB A;  2EK2 A;  1PJT A;  2ENI A;  2DSI A;  1WYZ A;  2E07 A;  2EK4 A;  3NUT A;  2PCK A;  2HUX A;  2PCG A;  2EL2 A;  2DXW A;  3ND1 A;  2OWU A;  2E0N A;  2ED3 A;  2EKA A;  1S4D A;  2ZVC A;  1V9A A;  2PCM A; 
#chains in the Genus database with same CATH topology
 3NDC A;  3KE8 A;  1VHV A;  2E4R A;  2EK3 A;  2QBU A;  2E4N A;  2DV4 A;  1WNG A;  3DNF A;  2YBO A;  2EGS A;  2EHC A;  2E8S A;  2E0K A;  2EJK A;  2EMU A;  2E08 A;  2HR8 A;  3UV3 A;  3NEI A;  2OWF A;  3KE9 A;  2EN5 A;  5HW4 A;  1PJQ A;  2EL1 A;  2EJJ A;  2E17 A;  2EMR A;  3SZU A;  2Z6R A;  3UTD A;  2PCA A;  2DV3 A;  4N7B A;  3UWM A;  2KYY A;  3URK A;  4MV0 A;  3SZL A;  2E8Q A;  2PCH A;  2P5F A;  1WDE A;  2PCI A;  2DXV A;  2EHL A;  2E8H A;  3KWP A;  2OWG A;  4H4D A;  2DSG A;  2OWK A;  2EH4 A;  2OWV A;  2BB3 A;  2HUQ A;  2PB6 A;  3UTC A;  1VCE A;  3FQ6 A;  2CBF A;  3UV7 A;  2DSH A;  2EEQ A;  3T0F A;  2EJZ A;  2EH2 A;  2EL0 A;  2ELD A;  2P6L A;  2P6D A;  2DV5 A;  2E15 A;  2ELE A;  2PB4 A;  1PJS A;  2YBQ A;  2DXX A;  3FFY A;  4E16 A;  2ED5 A;  2P5C A;  3KEM A;  3ZGN A;  3HH1 A;  1CBF A;  2NPN A;  1VA0 A;  2P9D A;  4H4C A;  1VE2 A;  2PB5 A;  2E16 A;  3TIX B;  3T0G A;  2E8R A;  2HUV A;  2P2X A;  2E7R A;  2EGL A;  3LMM A;  2HUT A;  2P6K A;  3SZO A;  2P6I A;  2EH5 A;  2EL3 A;  4MUX A;  2DV7 A;  2EGB A;  3KEL A;  2EK7 A;  2DEK A;  3I4T A;  2ZVB A;  4EB3 A;  2EK2 A;  1PJT A;  2ENI A;  2DSI A;  4MV5 A;  4MUY A;  1WYZ A;  2E07 A;  2EK4 A;  3KEF A;  3NUT A;  2PCK A;  2HUX A;  2PCG A;  2EL2 A;  3UV6 A;  3F7T A;  3ZGL A;  2DXW A;  3ND1 A;  2OWU A;  4H4E A;  2E0N A;  2ED3 A;  2EKA A;  1S4D A;  2ZVC A;  1V9A A;  2PCM A; 
#chains in the Genus database with same CATH homology
 3NDC A;  3KE8 A;  1VHV A;  2E4R A;  2EK3 A;  2QBU A;  2E4N A;  2DV4 A;  1WNG A;  3DNF A;  2YBO A;  2EGS A;  2EHC A;  2E8S A;  2E0K A;  2EJK A;  2EMU A;  2E08 A;  2HR8 A;  3UV3 A;  3NEI A;  2OWF A;  3KE9 A;  2EN5 A;  5HW4 A;  1PJQ A;  2EL1 A;  2EJJ A;  2E17 A;  2EMR A;  3SZU A;  2Z6R A;  3UTD A;  2PCA A;  2DV3 A;  4N7B A;  3UWM A;  2KYY A;  3URK A;  4MV0 A;  3SZL A;  2E8Q A;  2PCH A;  2P5F A;  1WDE A;  2PCI A;  2DXV A;  2EHL A;  2E8H A;  3KWP A;  2OWG A;  4H4D A;  2DSG A;  2OWK A;  2EH4 A;  2OWV A;  2BB3 A;  2HUQ A;  2PB6 A;  3UTC A;  1VCE A;  3FQ6 A;  2CBF A;  3UV7 A;  2DSH A;  2EEQ A;  3T0F A;  2EJZ A;  2EH2 A;  2EL0 A;  2ELD A;  2P6L A;  2P6D A;  2DV5 A;  2E15 A;  2ELE A;  2PB4 A;  1PJS A;  2YBQ A;  2DXX A;  3FFY A;  4E16 A;  2ED5 A;  2P5C A;  3KEM A;  3ZGN A;  3HH1 A;  1CBF A;  2NPN A;  1VA0 A;  2P9D A;  4H4C A;  1VE2 A;  2PB5 A;  2E16 A;  3TIX B;  3T0G A;  2E8R A;  2HUV A;  2P2X A;  2E7R A;  2EGL A;  3LMM A;  2HUT A;  2P6K A;  3SZO A;  2P6I A;  2EH5 A;  2EL3 A;  4MUX A;  2DV7 A;  2EGB A;  3KEL A;  2EK7 A;  2DEK A;  3I4T A;  2ZVB A;  4EB3 A;  2EK2 A;  1PJT A;  2ENI A;  2DSI A;  4MV5 A;  4MUY A;  1WYZ A;  2E07 A;  2EK4 A;  3KEF A;  3NUT A;  2PCK A;  2HUX A;  2PCG A;  2EL2 A;  3UV6 A;  3F7T A;  3ZGL A;  2DXW A;  3ND1 A;  2OWU A;  4H4E A;  2E0N A;  2ED3 A;  2EKA A;  1S4D A;  2ZVC A;  1V9A A;  2PCM A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...