2P5CA

Crystal structure of ph0725 from pyrococcus horikoshii ot3
Total Genus 80
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
80
sequence length
265
structure length
265
Chain Sequence
MVLYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQKLIGKEIRVLSREDVELNFENIVLPLAKENDVAFLTPGDPMVATTHAELRIRAKRAGVESYVIHAPSIYSAVGITGLHIYKFGKSATVAYPEGNWFPTSYYDVIKENAERGLHTLLFLDIKAEKRMYMTANEAMELLLKVEDMKKGGVFTDDTLVVVLARAGSLNPTIRAGYVKDLIREDFGDPPHILIVPGKLHIVEAEYLVEIAGAPREILRVNV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of PH0725 from Pyrococcus horikoshii OT3
rcsb
source organism Pyrococcus horikoshii
molecule tags Transferase
molecule keywords diphthine synthase
total genus 80
structure length 265
sequence length 265
chains with identical sequence B
ec nomenclature ec 2.1.1.98: Diphthine synthase.
pdb deposition date 2007-03-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00590 TP_methylase Tetrapyrrole (Corrin/Porphyrin) Methylases
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.950.10 Alpha Beta 2-Layer Sandwich Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 2p5cA02
3.40.1010.10 Alpha Beta 3-Layer(aba) Sandwich Cobalt-precorrin-4 Transmethylase; domain 1 Cobalt-precorrin-4 Transmethylase; Domain 1 2p5cA01
2DV3A 2PB4A 2ZVCA 2PB5A 2E17A 2EH4A 2CBFA 2HUQA 2HR8A 2EH2A 1VE2A 3FQ6A 1PJSA 2DSIA 2OWFA 2ENIA 2YBQA 2P6LA 3I4TA 1CBFA 2E8SA 2DXWA 2P6KA 3NUTA 2P2XA 2EGLA 3NEIA 1VCEA 2DXXA 2EK3A 2P6DA 2E0KA 2EK7A 2PCKA 2E4RA 2EEQA 2PCGA 2DSHA 2EN5A 3KWPA 2NPNA 2QBUA 2ED3A 2EK4A 2DV5A 2OWUA 2EHCA 2DSGA 2E8QA 2Z6RA 1WNGA 3NDCA 2HUXA 2PCIA 4E16A 2HUTA 3FFYA 2E15A 1WDEA 2E7RA 3HH1A 2OWGA 2PCAA 2E8HA 2PB6A 2E0NA 2EH5A 2P5FA 2ED5A 2YBOA 2EL2A 2P6IA 2EK2A 2PCHA 2DXVA 2BB3A 2EL0A 2DV7A 1PJQA 1WYZA 2OWKA 1V9AA 2E8RA 2EL1A 2EMUA 2EJZA 5HW4A 1VA0A 2ZVBA 2EJJA 2OWVA 2HUVA 2EJKA 1VHVA 3ND1A 2EMRA 2EGBA 2ELDA 2E16A 1S4DA 2EHLA 2E4NA 2E08A 2DEKA 1PJTA 2EL3A 2P5CA 2PCMA 2P9DA 2E07A 2EGSA 2EKAA 2ELEA 2DV4A
chains in the Genus database with same CATH superfamily
4MV5A 2DV3A 2PB4A 3F7TA 2ZVCA 2PB5A 2E17A 2EH4A 2CBFA 2HUQA 2HR8A 3KEMA 3SZUA 2EH2A 4H4EA 3TIXB 3ZGLA 1VE2A 3FQ6A 1PJSA 2DSIA 2OWFA 2ENIA 3SZLA 2YBQA 2P6LA 4MV0A 3I4TA 3KE8A 1CBFA 2E8SA 2DXWA 2P6KA 3NUTA 3DNFA 2P2XA 2EGLA 3LMMA 1VCEA 3NEIA 2DXXA 2EK3A 2E0KA 2P6DA 2EK7A 2PCKA 2E4RA 2EEQA 2PCGA 2DSHA 2EN5A 3KE9A 3KWPA 2NPNA 2QBUA 2ED3A 4EB3A 2EK4A 3UWMA 2DV5A 2OWUA 2EHCA 2KYYA 2DSGA 2E8QA 2Z6RA 3UV6A 3KELA 1WNGA 3NDCA 2HUXA 2PCIA 4E16A 2HUTA 3FFYA 3UV3A 2E15A 4H4DA 1WDEA 2E7RA 3HH1A 4N7BA 2OWGA 2PCAA 2E8HA 2PB6A 2E0NA 2EH5A 2P5FA 3T0FA 2ED5A 3KEFA 3ZGNA 4MUYA 2YBOA 2EL2A 2P6IA 2EK2A 2PCHA 2DXVA 2BB3A 2EL0A 3UTDA 2DV7A 1PJQA 1WYZA 3SZOA 4H4CA 2OWKA 1V9AA 2E8RA 2EL1A 2EMUA 2EJZA 5HW4A 3URKA 1VA0A 2ZVBA 2EJJA 2OWVA 2HUVA 2EJKA 1VHVA 3ND1A 2EMRA 4MUXA 2EGBA 2ELDA 3UV7A 2E16A 1S4DA 2EHLA 2E4NA 2E08A 2DEKA 1PJTA 2EL3A 2P5CA 3UTCA 2PCMA 2P9DA 3T0GA 2E07A 2EGSA 2EKAA 2ELEA 2DV4A
chains in the Genus database with same CATH topology
4MV5A 2DV3A 2PB4A 3F7TA 2ZVCA 2PB5A 2E17A 2EH4A 2CBFA 2HUQA 2HR8A 3KEMA 3SZUA 2EH2A 4H4EA 3TIXB 3ZGLA 1VE2A 3FQ6A 1PJSA 2DSIA 2OWFA 2ENIA 3SZLA 2YBQA 2P6LA 4MV0A 3I4TA 3KE8A 1CBFA 2E8SA 2DXWA 2P6KA 3NUTA 3DNFA 2P2XA 2EGLA 3LMMA 1VCEA 3NEIA 2DXXA 2EK3A 2E0KA 2P6DA 2EK7A 2PCKA 2E4RA 2EEQA 2PCGA 2DSHA 2EN5A 3KE9A 3KWPA 2NPNA 2QBUA 2ED3A 4EB3A 2EK4A 3UWMA 2DV5A 2OWUA 2EHCA 2KYYA 2DSGA 2E8QA 2Z6RA 3UV6A 3KELA 1WNGA 3NDCA 2HUXA 2PCIA 4E16A 2HUTA 3FFYA 3UV3A 2E15A 4H4DA 1WDEA 2E7RA 3HH1A 4N7BA 2OWGA 2PCAA 2E8HA 2PB6A 2E0NA 2EH5A 2P5FA 3T0FA 2ED5A 3KEFA 3ZGNA 4MUYA 2YBOA 2EL2A 2P6IA 2EK2A 2PCHA 2DXVA 2BB3A 2EL0A 3UTDA 2DV7A 1PJQA 1WYZA 3SZOA 4H4CA 2OWKA 1V9AA 2E8RA 2EL1A 2EMUA 2EJZA 5HW4A 3URKA 1VA0A 2ZVBA 2EJJA 2OWVA 2HUVA 2EJKA 1VHVA 3ND1A 2EMRA 4MUXA 2EGBA 2ELDA 3UV7A 2E16A 1S4DA 2EHLA 2E4NA 2E08A 2DEKA 1PJTA 2EL3A 2P5CA 3UTCA 2PCMA 2P9DA 3T0GA 2E07A 2EGSA 2EKAA 2ELEA 2DV4A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2DV3 A;  2PB4 A;  2ZVC A;  2PB5 A;  2E17 A;  2EH4 A;  2CBF A;  2HUQ A;  2HR8 A;  2EH2 A;  1VE2 A;  3FQ6 A;  1PJS A;  2DSI A;  2OWF A;  2ENI A;  2YBQ A;  2P6L A;  3I4T A;  1CBF A;  2E8S A;  2DXW A;  2P6K A;  3NUT A;  2P2X A;  2EGL A;  3NEI A;  1VCE A;  2DXX A;  2EK3 A;  2P6D A;  2E0K A;  2EK7 A;  2PCK A;  2E4R A;  2EEQ A;  2PCG A;  2DSH A;  2EN5 A;  3KWP A;  2NPN A;  2QBU A;  2ED3 A;  2EK4 A;  2DV5 A;  2OWU A;  2EHC A;  2DSG A;  2E8Q A;  2Z6R A;  1WNG A;  3NDC A;  2HUX A;  2PCI A;  4E16 A;  2HUT A;  3FFY A;  2E15 A;  1WDE A;  2E7R A;  3HH1 A;  2OWG A;  2PCA A;  2E8H A;  2PB6 A;  2E0N A;  2EH5 A;  2P5F A;  2ED5 A;  2YBO A;  2EL2 A;  2P6I A;  2EK2 A;  2PCH A;  2DXV A;  2BB3 A;  2EL0 A;  2DV7 A;  1PJQ A;  1WYZ A;  2OWK A;  1V9A A;  2E8R A;  2EL1 A;  2EMU A;  2EJZ A;  5HW4 A;  1VA0 A;  2ZVB A;  2EJJ A;  2OWV A;  2HUV A;  2EJK A;  1VHV A;  3ND1 A;  2EMR A;  2EGB A;  2ELD A;  2E16 A;  1S4D A;  2EHL A;  2E4N A;  2E08 A;  2DEK A;  1PJT A;  2EL3 A;  2P5C A;  2PCM A;  2P9D A;  2E07 A;  2EGS A;  2EKA A;  2ELE A;  2DV4 A; 
#chains in the Genus database with same CATH topology
 4MV5 A;  2DV3 A;  2PB4 A;  3F7T A;  2ZVC A;  2PB5 A;  2E17 A;  2EH4 A;  2CBF A;  2HUQ A;  2HR8 A;  3KEM A;  3SZU A;  2EH2 A;  4H4E A;  3TIX B;  3ZGL A;  1VE2 A;  3FQ6 A;  1PJS A;  2DSI A;  2OWF A;  2ENI A;  3SZL A;  2YBQ A;  2P6L A;  4MV0 A;  3I4T A;  3KE8 A;  1CBF A;  2E8S A;  2DXW A;  2P6K A;  3NUT A;  3DNF A;  2P2X A;  2EGL A;  3LMM A;  1VCE A;  3NEI A;  2DXX A;  2EK3 A;  2E0K A;  2P6D A;  2EK7 A;  2PCK A;  2E4R A;  2EEQ A;  2PCG A;  2DSH A;  2EN5 A;  3KE9 A;  3KWP A;  2NPN A;  2QBU A;  2ED3 A;  4EB3 A;  2EK4 A;  3UWM A;  2DV5 A;  2OWU A;  2EHC A;  2KYY A;  2DSG A;  2E8Q A;  2Z6R A;  3UV6 A;  3KEL A;  1WNG A;  3NDC A;  2HUX A;  2PCI A;  4E16 A;  2HUT A;  3FFY A;  3UV3 A;  2E15 A;  4H4D A;  1WDE A;  2E7R A;  3HH1 A;  4N7B A;  2OWG A;  2PCA A;  2E8H A;  2PB6 A;  2E0N A;  2EH5 A;  2P5F A;  3T0F A;  2ED5 A;  3KEF A;  3ZGN A;  4MUY A;  2YBO A;  2EL2 A;  2P6I A;  2EK2 A;  2PCH A;  2DXV A;  2BB3 A;  2EL0 A;  3UTD A;  2DV7 A;  1PJQ A;  1WYZ A;  3SZO A;  4H4C A;  2OWK A;  1V9A A;  2E8R A;  2EL1 A;  2EMU A;  2EJZ A;  5HW4 A;  3URK A;  1VA0 A;  2ZVB A;  2EJJ A;  2OWV A;  2HUV A;  2EJK A;  1VHV A;  3ND1 A;  2EMR A;  4MUX A;  2EGB A;  2ELD A;  3UV7 A;  2E16 A;  1S4D A;  2EHL A;  2E4N A;  2E08 A;  2DEK A;  1PJT A;  2EL3 A;  2P5C A;  3UTC A;  2PCM A;  2P9D A;  3T0G A;  2E07 A;  2EGS A;  2EKA A;  2ELE A;  2DV4 A; 
#chains in the Genus database with same CATH homology
 4MV5 A;  2DV3 A;  2PB4 A;  3F7T A;  2ZVC A;  2PB5 A;  2E17 A;  2EH4 A;  2CBF A;  2HUQ A;  2HR8 A;  3KEM A;  3SZU A;  2EH2 A;  4H4E A;  3TIX B;  3ZGL A;  1VE2 A;  3FQ6 A;  1PJS A;  2DSI A;  2OWF A;  2ENI A;  3SZL A;  2YBQ A;  2P6L A;  4MV0 A;  3I4T A;  3KE8 A;  1CBF A;  2E8S A;  2DXW A;  2P6K A;  3NUT A;  3DNF A;  2P2X A;  2EGL A;  3LMM A;  1VCE A;  3NEI A;  2DXX A;  2EK3 A;  2E0K A;  2P6D A;  2EK7 A;  2PCK A;  2E4R A;  2EEQ A;  2PCG A;  2DSH A;  2EN5 A;  3KE9 A;  3KWP A;  2NPN A;  2QBU A;  2ED3 A;  4EB3 A;  2EK4 A;  3UWM A;  2DV5 A;  2OWU A;  2EHC A;  2KYY A;  2DSG A;  2E8Q A;  2Z6R A;  3UV6 A;  3KEL A;  1WNG A;  3NDC A;  2HUX A;  2PCI A;  4E16 A;  2HUT A;  3FFY A;  3UV3 A;  2E15 A;  4H4D A;  1WDE A;  2E7R A;  3HH1 A;  4N7B A;  2OWG A;  2PCA A;  2E8H A;  2PB6 A;  2E0N A;  2EH5 A;  2P5F A;  3T0F A;  2ED5 A;  3KEF A;  3ZGN A;  4MUY A;  2YBO A;  2EL2 A;  2P6I A;  2EK2 A;  2PCH A;  2DXV A;  2BB3 A;  2EL0 A;  3UTD A;  2DV7 A;  1PJQ A;  1WYZ A;  3SZO A;  4H4C A;  2OWK A;  1V9A A;  2E8R A;  2EL1 A;  2EMU A;  2EJZ A;  5HW4 A;  3URK A;  1VA0 A;  2ZVB A;  2EJJ A;  2OWV A;  2HUV A;  2EJK A;  1VHV A;  3ND1 A;  2EMR A;  4MUX A;  2EGB A;  2ELD A;  3UV7 A;  2E16 A;  1S4D A;  2EHL A;  2E4N A;  2E08 A;  2DEK A;  1PJT A;  2EL3 A;  2P5C A;  3UTC A;  2PCM A;  2P9D A;  3T0G A;  2E07 A;  2EGS A;  2EKA A;  2ELE A;  2DV4 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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