2P5FA

Crystal structure of ph0725 from pyrococcus horikoshii ot3
Total Genus 82
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
82
sequence length
265
structure length
265
Chain Sequence
b'MVLYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQKLIGKEIRVLSREDVELNFENIVLPLAKENDVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSIYSAVGITGLHIYKFGKSMTVAYPEGNWFPTSYYDVIKENAERGLHTLLFLDIKAEKRMYMTANEAMELLLKVEDMKKGGVFTDDTLVVVLARAGSLNPTIRAGYVKDLIREDFGDPPHILIVPGKLHIVEAEYLVEIAGAPREILRVNV'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords diphthine synthase
publication title Crystal structure of PH0725 from Pyrococcus horikoshii OT3
rcsb
source organism Pyrococcus horikoshii
molecule tags Transferase
total genus 82
structure length 265
sequence length 265
chains with identical sequence B
ec nomenclature ec 2.1.1.98: Diphthine synthase.
pdb deposition date 2007-03-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00590 TP_methylase Tetrapyrrole (Corrin/Porphyrin) Methylases
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.950.10 Alpha Beta 2-Layer Sandwich Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 2p5fA02
3.40.1010.10 Alpha Beta 3-Layer(aba) Sandwich Cobalt-precorrin-4 Transmethylase; domain 1 Cobalt-precorrin-4 Transmethylase; Domain 1 2p5fA01
2EK2A 1WNGA 2DXXA 2EHLA 1VE2A 2EJKA 3NDCA 2E8QA 2PCAA 2E8SA 2DV5A 2EJJA 2DV3A 2HUTA 2ED5A 2EKAA 2PCIA 2OWKA 2EK3A 2EGBA 2E17A 1VA0A 3NUTA 2E8HA 3FQ6A 2OWVA 1WDEA 2E4NA 2P6LA 2P6KA 2P6DA 2E0NA 3KWPA 1V9AA 2PB5A 2EL2A 2EL1A 2OWFA 2OWGA 2DSIA 2NPNA 2EL0A 2PB4A 3HH1A 2EH4A 2EJZA 2PCMA 2EL3A 2EH5A 2P5FA 3NEIA 2HR8A 2HUXA 2PB6A 2DV4A 2ZVBA 1VHVA 2YBQA 2YBOA 2EGLA 2EMUA 2HUVA 2CBFA 2E4RA 2DSHA 2E8RA 2ELDA 2ENIA 3ND1A 2P5CA 2E08A 2DEKA 2P2XA 2EK7A 1CBFA 1PJQA 1S4DA 2Z6RA 2ELEA 2PCKA 2EGSA 2EMRA 1WYZA 2PCGA 1PJTA 2EHCA 3FFYA 1VCEA 2QBUA 2BB3A 2P6IA 4E16A 1PJSA 2EN5A 2E07A 2HUQA 2E0KA 2DSGA 2DV7A 2OWUA 2E16A 2P9DA 2PCHA 5HW4A 2EH2A 2DXWA 2ED3A 2E7RA 2DXVA 2E15A 2EK4A 3I4TA 2ZVCA 2EEQA
chains in the Genus database with same CATH superfamily
2EK2A 1WNGA 4N7BA 2DXXA 2EHLA 1VE2A 2EJKA 3NDCA 2E8QA 2PCAA 2E8SA 2DV5A 4MUYA 4EB3A 2EJJA 2DV3A 3ZGLA 3KELA 2HUTA 4H4DA 2ED5A 2EKAA 2PCIA 2OWKA 3F7TA 2EK3A 2EGBA 2E17A 1VA0A 3NUTA 2E8HA 3FQ6A 2OWVA 1WDEA 2E4NA 2P6LA 2P6KA 2P6DA 2E0NA 3KWPA 1V9AA 2PB5A 3KEMA 2EL2A 2EL1A 4H4EA 2OWFA 2OWGA 2DSIA 2NPNA 2EL0A 2PB4A 3HH1A 2EH4A 2EJZA 2PCMA 3UTDA 2EL3A 2EH5A 2P5FA 3UTCA 4MUXA 3NEIA 2HR8A 2HUXA 2PB6A 2DV4A 4MV5A 3LMMA 2ZVBA 3UV3A 3KEFA 1VHVA 2YBQA 2YBOA 2EGLA 2EMUA 2HUVA 2CBFA 2E4RA 2DSHA 2E8RA 2ELDA 3SZUA 2ENIA 3KE8A 3ND1A 2P5CA 2E08A 2DEKA 2P2XA 2KYYA 3UV7A 2EK7A 1CBFA 1PJQA 4MV0A 3UWMA 1S4DA 2Z6RA 2ELEA 2PCKA 2EGSA 2EMRA 1WYZA 2PCGA 3SZLA 1PJTA 2EHCA 3FFYA 1VCEA 2QBUA 2BB3A 2P6IA 4E16A 1PJSA 2EN5A 2E07A 2HUQA 2E0KA 2DSGA 2DV7A 3T0GA 3TIXB 2OWUA 3SZOA 2E16A 3KE9A 3ZGNA 3DNFA 2P9DA 2PCHA 5HW4A 3UV6A 2EH2A 4H4CA 3T0FA 2DXWA 2ED3A 3URKA 2E7RA 2DXVA 2E15A 2EK4A 3I4TA 2ZVCA 2EEQA
chains in the Genus database with same CATH topology
2EK2A 1WNGA 4N7BA 2DXXA 2EHLA 1VE2A 2EJKA 3NDCA 2E8QA 2PCAA 2E8SA 2DV5A 4MUYA 4EB3A 2EJJA 2DV3A 3ZGLA 3KELA 2HUTA 4H4DA 2ED5A 2EKAA 2PCIA 2OWKA 3F7TA 2EK3A 2EGBA 2E17A 1VA0A 3NUTA 2E8HA 3FQ6A 2OWVA 1WDEA 2E4NA 2P6LA 2P6KA 2P6DA 2E0NA 3KWPA 1V9AA 2PB5A 3KEMA 2EL2A 2EL1A 4H4EA 2OWFA 2OWGA 2DSIA 2NPNA 2EL0A 2PB4A 3HH1A 2EH4A 2EJZA 2PCMA 3UTDA 2EL3A 2EH5A 2P5FA 3UTCA 4MUXA 3NEIA 2HR8A 2HUXA 2PB6A 2DV4A 4MV5A 3LMMA 2ZVBA 3UV3A 3KEFA 1VHVA 2YBQA 2YBOA 2EGLA 2EMUA 2HUVA 2CBFA 2E4RA 2DSHA 2E8RA 2ELDA 3SZUA 2ENIA 3KE8A 3ND1A 2P5CA 2E08A 2DEKA 2P2XA 2KYYA 3UV7A 2EK7A 1CBFA 1PJQA 4MV0A 3UWMA 1S4DA 2Z6RA 2ELEA 2PCKA 2EGSA 2EMRA 1WYZA 2PCGA 3SZLA 1PJTA 2EHCA 3FFYA 1VCEA 2QBUA 2BB3A 2P6IA 4E16A 1PJSA 2EN5A 2E07A 2HUQA 2E0KA 2DSGA 2DV7A 3T0GA 3TIXB 2OWUA 3SZOA 2E16A 3KE9A 3ZGNA 3DNFA 2P9DA 2PCHA 5HW4A 3UV6A 2EH2A 4H4CA 3T0FA 2DXWA 2ED3A 3URKA 2E7RA 2DXVA 2E15A 2EK4A 3I4TA 2ZVCA 2EEQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2EK2 A;  1WNG A;  2DXX A;  2EHL A;  1VE2 A;  2EJK A;  3NDC A;  2E8Q A;  2PCA A;  2E8S A;  2DV5 A;  2EJJ A;  2DV3 A;  2HUT A;  2ED5 A;  2EKA A;  2PCI A;  2OWK A;  2EK3 A;  2EGB A;  2E17 A;  1VA0 A;  3NUT A;  2E8H A;  3FQ6 A;  2OWV A;  1WDE A;  2E4N A;  2P6L A;  2P6K A;  2P6D A;  2E0N A;  3KWP A;  1V9A A;  2PB5 A;  2EL2 A;  2EL1 A;  2OWF A;  2OWG A;  2DSI A;  2NPN A;  2EL0 A;  2PB4 A;  3HH1 A;  2EH4 A;  2EJZ A;  2PCM A;  2EL3 A;  2EH5 A;  2P5F A;  3NEI A;  2HR8 A;  2HUX A;  2PB6 A;  2DV4 A;  2ZVB A;  1VHV A;  2YBQ A;  2YBO A;  2EGL A;  2EMU A;  2HUV A;  2CBF A;  2E4R A;  2DSH A;  2E8R A;  2ELD A;  2ENI A;  3ND1 A;  2P5C A;  2E08 A;  2DEK A;  2P2X A;  2EK7 A;  1CBF A;  1PJQ A;  1S4D A;  2Z6R A;  2ELE A;  2PCK A;  2EGS A;  2EMR A;  1WYZ A;  2PCG A;  1PJT A;  2EHC A;  3FFY A;  1VCE A;  2QBU A;  2BB3 A;  2P6I A;  4E16 A;  1PJS A;  2EN5 A;  2E07 A;  2HUQ A;  2E0K A;  2DSG A;  2DV7 A;  2OWU A;  2E16 A;  2P9D A;  2PCH A;  5HW4 A;  2EH2 A;  2DXW A;  2ED3 A;  2E7R A;  2DXV A;  2E15 A;  2EK4 A;  3I4T A;  2ZVC A;  2EEQ A; 
#chains in the Genus database with same CATH topology
 2EK2 A;  1WNG A;  4N7B A;  2DXX A;  2EHL A;  1VE2 A;  2EJK A;  3NDC A;  2E8Q A;  2PCA A;  2E8S A;  2DV5 A;  4MUY A;  4EB3 A;  2EJJ A;  2DV3 A;  3ZGL A;  3KEL A;  2HUT A;  4H4D A;  2ED5 A;  2EKA A;  2PCI A;  2OWK A;  3F7T A;  2EK3 A;  2EGB A;  2E17 A;  1VA0 A;  3NUT A;  2E8H A;  3FQ6 A;  2OWV A;  1WDE A;  2E4N A;  2P6L A;  2P6K A;  2P6D A;  2E0N A;  3KWP A;  1V9A A;  2PB5 A;  3KEM A;  2EL2 A;  2EL1 A;  4H4E A;  2OWF A;  2OWG A;  2DSI A;  2NPN A;  2EL0 A;  2PB4 A;  3HH1 A;  2EH4 A;  2EJZ A;  2PCM A;  3UTD A;  2EL3 A;  2EH5 A;  2P5F A;  3UTC A;  4MUX A;  3NEI A;  2HR8 A;  2HUX A;  2PB6 A;  2DV4 A;  4MV5 A;  3LMM A;  2ZVB A;  3UV3 A;  3KEF A;  1VHV A;  2YBQ A;  2YBO A;  2EGL A;  2EMU A;  2HUV A;  2CBF A;  2E4R A;  2DSH A;  2E8R A;  2ELD A;  3SZU A;  2ENI A;  3KE8 A;  3ND1 A;  2P5C A;  2E08 A;  2DEK A;  2P2X A;  2KYY A;  3UV7 A;  2EK7 A;  1CBF A;  1PJQ A;  4MV0 A;  3UWM A;  1S4D A;  2Z6R A;  2ELE A;  2PCK A;  2EGS A;  2EMR A;  1WYZ A;  2PCG A;  3SZL A;  1PJT A;  2EHC A;  3FFY A;  1VCE A;  2QBU A;  2BB3 A;  2P6I A;  4E16 A;  1PJS A;  2EN5 A;  2E07 A;  2HUQ A;  2E0K A;  2DSG A;  2DV7 A;  3T0G A;  3TIX B;  2OWU A;  3SZO A;  2E16 A;  3KE9 A;  3ZGN A;  3DNF A;  2P9D A;  2PCH A;  5HW4 A;  3UV6 A;  2EH2 A;  4H4C A;  3T0F A;  2DXW A;  2ED3 A;  3URK A;  2E7R A;  2DXV A;  2E15 A;  2EK4 A;  3I4T A;  2ZVC A;  2EEQ A; 
#chains in the Genus database with same CATH homology
 2EK2 A;  1WNG A;  4N7B A;  2DXX A;  2EHL A;  1VE2 A;  2EJK A;  3NDC A;  2E8Q A;  2PCA A;  2E8S A;  2DV5 A;  4MUY A;  4EB3 A;  2EJJ A;  2DV3 A;  3ZGL A;  3KEL A;  2HUT A;  4H4D A;  2ED5 A;  2EKA A;  2PCI A;  2OWK A;  3F7T A;  2EK3 A;  2EGB A;  2E17 A;  1VA0 A;  3NUT A;  2E8H A;  3FQ6 A;  2OWV A;  1WDE A;  2E4N A;  2P6L A;  2P6K A;  2P6D A;  2E0N A;  3KWP A;  1V9A A;  2PB5 A;  3KEM A;  2EL2 A;  2EL1 A;  4H4E A;  2OWF A;  2OWG A;  2DSI A;  2NPN A;  2EL0 A;  2PB4 A;  3HH1 A;  2EH4 A;  2EJZ A;  2PCM A;  3UTD A;  2EL3 A;  2EH5 A;  2P5F A;  3UTC A;  4MUX A;  3NEI A;  2HR8 A;  2HUX A;  2PB6 A;  2DV4 A;  4MV5 A;  3LMM A;  2ZVB A;  3UV3 A;  3KEF A;  1VHV A;  2YBQ A;  2YBO A;  2EGL A;  2EMU A;  2HUV A;  2CBF A;  2E4R A;  2DSH A;  2E8R A;  2ELD A;  3SZU A;  2ENI A;  3KE8 A;  3ND1 A;  2P5C A;  2E08 A;  2DEK A;  2P2X A;  2KYY A;  3UV7 A;  2EK7 A;  1CBF A;  1PJQ A;  4MV0 A;  3UWM A;  1S4D A;  2Z6R A;  2ELE A;  2PCK A;  2EGS A;  2EMR A;  1WYZ A;  2PCG A;  3SZL A;  1PJT A;  2EHC A;  3FFY A;  1VCE A;  2QBU A;  2BB3 A;  2P6I A;  4E16 A;  1PJS A;  2EN5 A;  2E07 A;  2HUQ A;  2E0K A;  2DSG A;  2DV7 A;  3T0G A;  3TIX B;  2OWU A;  3SZO A;  2E16 A;  3KE9 A;  3ZGN A;  3DNF A;  2P9D A;  2PCH A;  5HW4 A;  3UV6 A;  2EH2 A;  4H4C A;  3T0F A;  2DXW A;  2ED3 A;  3URK A;  2E7R A;  2DXV A;  2E15 A;  2EK4 A;  3I4T A;  2ZVC A;  2EEQ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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