2P5FA

Crystal structure of ph0725 from pyrococcus horikoshii ot3
Total Genus 82
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
82
sequence length
265
structure length
265
Chain Sequence
MVLYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQKLIGKEIRVLSREDVELNFENIVLPLAKENDVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSIYSAVGITGLHIYKFGKSMTVAYPEGNWFPTSYYDVIKENAERGLHTLLFLDIKAEKRMYMTANEAMELLLKVEDMKKGGVFTDDTLVVVLARAGSLNPTIRAGYVKDLIREDFGDPPHILIVPGKLHIVEAEYLVEIAGAPREILRVNV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords diphthine synthase
publication title Crystal structure of PH0725 from Pyrococcus horikoshii OT3
rcsb
source organism Pyrococcus horikoshii
total genus 82
structure length 265
sequence length 265
chains with identical sequence B
ec nomenclature ec 2.1.1.98: Diphthine synthase.
pdb deposition date 2007-03-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00590 TP_methylase Tetrapyrrole (Corrin/Porphyrin) Methylases
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.950.10 Alpha Beta 2-Layer Sandwich Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 2p5fA02
3.40.1010.10 Alpha Beta 3-Layer(aba) Sandwich Cobalt-precorrin-4 Transmethylase; domain 1 Cobalt-precorrin-4 Transmethylase; Domain 1 2p5fA01
2PCMA 1V9AA 2DSIA 2EJKA 2EH2A 2DV4A 2OWVA 2ZVCA 2E8HA 2ED5A 2EHLA 2ZVBA 2E16A 2EJJA 2P6DA 2YBOA 1PJQA 2HUXA 3FQ6A 2P6KA 2DEKA 2EL3A 1VA0A 2PB6A 2OWGA 2OWUA 2E0NA 2P2XA 2DV7A 5HW4A 2HUTA 2DSGA 1PJSA 2DSHA 2E8RA 2E07A 2EK3A 2E08A 2P6LA 2E8SA 2EGBA 2EL0A 1WDEA 2EEQA 2EK4A 2ELDA 2HUQA 2OWFA 1WNGA 2EHCA 2P6IA 2EGLA 2EMUA 2ED3A 2EK2A 2DV3A 2PB4A 2BB3A 2DXVA 2EN5A 2ENIA 2P5CA 2CBFA 2PCHA 2E4RA 2PCIA 2Z6RA 2HR8A 2DXWA 2DXXA 2EKAA 2P9DA 1PJTA 2QBUA 2E4NA 2EJZA 3NUTA 2YBQA 2EK7A 1CBFA 2DV5A 2E0KA 3NEIA 2NPNA 3FFYA 2E8QA 2E17A 2PB5A 2EH4A 2EH5A 1VCEA 2P5FA 2OWKA 3I4TA 1VHVA 4E16A 1VE2A 2EMRA 2ELEA 3NDCA 2EL2A 1S4DA 2PCGA 2HUVA 3KWPA 2EL1A 2EGSA 2PCAA 2E7RA 1WYZA 3ND1A 3HH1A 2E15A 2PCKA
chains in the Genus database with same CATH superfamily
2PCMA 3UV3A 1V9AA 2DSIA 2EJKA 2EH2A 2DV4A 2OWVA 3F7TA 3UTDA 2ZVCA 2E8HA 2ED5A 2EHLA 3SZLA 2ZVBA 2E16A 2EJJA 4MV0A 2P6DA 2YBOA 3UV6A 1PJQA 2HUXA 3FQ6A 4EB3A 2P6KA 2DEKA 2EL3A 1VA0A 2PB6A 2OWGA 2OWUA 2E0NA 2P2XA 2DV7A 5HW4A 2HUTA 2DSGA 2KYYA 3T0GA 3URKA 3KELA 3LMMA 1PJSA 2DSHA 2E8RA 3ZGLA 2E07A 2EK3A 2E08A 2P6LA 2E8SA 3ZGNA 3SZOA 2EGBA 4H4CA 2EL0A 1WDEA 2EEQA 2EK4A 2ELDA 2HUQA 2OWFA 4MV5A 1WNGA 2EHCA 2P6IA 2EGLA 2EMUA 2ED3A 2EK2A 2DV3A 2PB4A 2BB3A 2DXVA 2EN5A 2ENIA 3DNFA 3T0FA 3KEFA 2P5CA 2CBFA 2PCHA 2E4RA 2PCIA 2Z6RA 2HR8A 2DXWA 2DXXA 2EKAA 2P9DA 1PJTA 2QBUA 2E4NA 2EJZA 3NUTA 2YBQA 2EK7A 1CBFA 2DV5A 2E0KA 3NEIA 2NPNA 3FFYA 2E8QA 2E17A 2PB5A 2EH4A 2EH5A 1VCEA 2P5FA 3SZUA 3KE9A 4MUYA 3UV7A 2OWKA 3I4TA 1VHVA 4E16A 4H4EA 1VE2A 2EMRA 2ELEA 3NDCA 2EL2A 4H4DA 1S4DA 4N7BA 2PCGA 3UTCA 2HUVA 3KWPA 2EL1A 4MUXA 2EGSA 2PCAA 3KEMA 2E7RA 1WYZA 3ND1A 3HH1A 2E15A 3UWMA 2PCKA 3TIXB 3KE8A
chains in the Genus database with same CATH topology
2PCMA 3UV3A 1V9AA 2DSIA 2EJKA 2EH2A 2DV4A 2OWVA 3F7TA 3UTDA 2ZVCA 2E8HA 2ED5A 2EHLA 3SZLA 2ZVBA 2E16A 2EJJA 4MV0A 2P6DA 2YBOA 3UV6A 1PJQA 2HUXA 3FQ6A 4EB3A 2P6KA 2DEKA 2EL3A 1VA0A 2PB6A 2OWGA 2OWUA 2E0NA 2P2XA 2DV7A 5HW4A 2HUTA 2DSGA 2KYYA 3T0GA 3URKA 3KELA 3LMMA 1PJSA 2DSHA 2E8RA 3ZGLA 2E07A 2EK3A 2E08A 2P6LA 2E8SA 3ZGNA 3SZOA 2EGBA 4H4CA 2EL0A 1WDEA 2EEQA 2EK4A 2ELDA 2HUQA 2OWFA 4MV5A 1WNGA 2EHCA 2P6IA 2EGLA 2EMUA 2ED3A 2EK2A 2DV3A 2PB4A 2BB3A 2DXVA 2EN5A 2ENIA 3DNFA 3T0FA 3KEFA 2P5CA 2CBFA 2PCHA 2E4RA 2PCIA 2Z6RA 2HR8A 2DXWA 2DXXA 2EKAA 2P9DA 1PJTA 2QBUA 2E4NA 2EJZA 3NUTA 2YBQA 2EK7A 1CBFA 2DV5A 2E0KA 3NEIA 2NPNA 3FFYA 2E8QA 2E17A 2PB5A 2EH4A 2EH5A 1VCEA 2P5FA 3SZUA 3KE9A 4MUYA 3UV7A 2OWKA 3I4TA 1VHVA 4E16A 4H4EA 1VE2A 2EMRA 2ELEA 3NDCA 2EL2A 4H4DA 1S4DA 4N7BA 2PCGA 3UTCA 2HUVA 3KWPA 2EL1A 4MUXA 2EGSA 2PCAA 3KEMA 2E7RA 1WYZA 3ND1A 3HH1A 2E15A 3UWMA 2PCKA 3TIXB 3KE8A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2PCM A;  1V9A A;  2DSI A;  2EJK A;  2EH2 A;  2DV4 A;  2OWV A;  2ZVC A;  2E8H A;  2ED5 A;  2EHL A;  2ZVB A;  2E16 A;  2EJJ A;  2P6D A;  2YBO A;  1PJQ A;  2HUX A;  3FQ6 A;  2P6K A;  2DEK A;  2EL3 A;  1VA0 A;  2PB6 A;  2OWG A;  2OWU A;  2E0N A;  2P2X A;  2DV7 A;  5HW4 A;  2HUT A;  2DSG A;  1PJS A;  2DSH A;  2E8R A;  2E07 A;  2EK3 A;  2E08 A;  2P6L A;  2E8S A;  2EGB A;  2EL0 A;  1WDE A;  2EEQ A;  2EK4 A;  2ELD A;  2HUQ A;  2OWF A;  1WNG A;  2EHC A;  2P6I A;  2EGL A;  2EMU A;  2ED3 A;  2EK2 A;  2DV3 A;  2PB4 A;  2BB3 A;  2DXV A;  2EN5 A;  2ENI A;  2P5C A;  2CBF A;  2PCH A;  2E4R A;  2PCI A;  2Z6R A;  2HR8 A;  2DXW A;  2DXX A;  2EKA A;  2P9D A;  1PJT A;  2QBU A;  2E4N A;  2EJZ A;  3NUT A;  2YBQ A;  2EK7 A;  1CBF A;  2DV5 A;  2E0K A;  3NEI A;  2NPN A;  3FFY A;  2E8Q A;  2E17 A;  2PB5 A;  2EH4 A;  2EH5 A;  1VCE A;  2P5F A;  2OWK A;  3I4T A;  1VHV A;  4E16 A;  1VE2 A;  2EMR A;  2ELE A;  3NDC A;  2EL2 A;  1S4D A;  2PCG A;  2HUV A;  3KWP A;  2EL1 A;  2EGS A;  2PCA A;  2E7R A;  1WYZ A;  3ND1 A;  3HH1 A;  2E15 A;  2PCK A; 
#chains in the Genus database with same CATH topology
 2PCM A;  3UV3 A;  1V9A A;  2DSI A;  2EJK A;  2EH2 A;  2DV4 A;  2OWV A;  3F7T A;  3UTD A;  2ZVC A;  2E8H A;  2ED5 A;  2EHL A;  3SZL A;  2ZVB A;  2E16 A;  2EJJ A;  4MV0 A;  2P6D A;  2YBO A;  3UV6 A;  1PJQ A;  2HUX A;  3FQ6 A;  4EB3 A;  2P6K A;  2DEK A;  2EL3 A;  1VA0 A;  2PB6 A;  2OWG A;  2OWU A;  2E0N A;  2P2X A;  2DV7 A;  5HW4 A;  2HUT A;  2DSG A;  2KYY A;  3T0G A;  3URK A;  3KEL A;  3LMM A;  1PJS A;  2DSH A;  2E8R A;  3ZGL A;  2E07 A;  2EK3 A;  2E08 A;  2P6L A;  2E8S A;  3ZGN A;  3SZO A;  2EGB A;  4H4C A;  2EL0 A;  1WDE A;  2EEQ A;  2EK4 A;  2ELD A;  2HUQ A;  2OWF A;  4MV5 A;  1WNG A;  2EHC A;  2P6I A;  2EGL A;  2EMU A;  2ED3 A;  2EK2 A;  2DV3 A;  2PB4 A;  2BB3 A;  2DXV A;  2EN5 A;  2ENI A;  3DNF A;  3T0F A;  3KEF A;  2P5C A;  2CBF A;  2PCH A;  2E4R A;  2PCI A;  2Z6R A;  2HR8 A;  2DXW A;  2DXX A;  2EKA A;  2P9D A;  1PJT A;  2QBU A;  2E4N A;  2EJZ A;  3NUT A;  2YBQ A;  2EK7 A;  1CBF A;  2DV5 A;  2E0K A;  3NEI A;  2NPN A;  3FFY A;  2E8Q A;  2E17 A;  2PB5 A;  2EH4 A;  2EH5 A;  1VCE A;  2P5F A;  3SZU A;  3KE9 A;  4MUY A;  3UV7 A;  2OWK A;  3I4T A;  1VHV A;  4E16 A;  4H4E A;  1VE2 A;  2EMR A;  2ELE A;  3NDC A;  2EL2 A;  4H4D A;  1S4D A;  4N7B A;  2PCG A;  3UTC A;  2HUV A;  3KWP A;  2EL1 A;  4MUX A;  2EGS A;  2PCA A;  3KEM A;  2E7R A;  1WYZ A;  3ND1 A;  3HH1 A;  2E15 A;  3UWM A;  2PCK A;  3TIX B;  3KE8 A; 
#chains in the Genus database with same CATH homology
 2PCM A;  3UV3 A;  1V9A A;  2DSI A;  2EJK A;  2EH2 A;  2DV4 A;  2OWV A;  3F7T A;  3UTD A;  2ZVC A;  2E8H A;  2ED5 A;  2EHL A;  3SZL A;  2ZVB A;  2E16 A;  2EJJ A;  4MV0 A;  2P6D A;  2YBO A;  3UV6 A;  1PJQ A;  2HUX A;  3FQ6 A;  4EB3 A;  2P6K A;  2DEK A;  2EL3 A;  1VA0 A;  2PB6 A;  2OWG A;  2OWU A;  2E0N A;  2P2X A;  2DV7 A;  5HW4 A;  2HUT A;  2DSG A;  2KYY A;  3T0G A;  3URK A;  3KEL A;  3LMM A;  1PJS A;  2DSH A;  2E8R A;  3ZGL A;  2E07 A;  2EK3 A;  2E08 A;  2P6L A;  2E8S A;  3ZGN A;  3SZO A;  2EGB A;  4H4C A;  2EL0 A;  1WDE A;  2EEQ A;  2EK4 A;  2ELD A;  2HUQ A;  2OWF A;  4MV5 A;  1WNG A;  2EHC A;  2P6I A;  2EGL A;  2EMU A;  2ED3 A;  2EK2 A;  2DV3 A;  2PB4 A;  2BB3 A;  2DXV A;  2EN5 A;  2ENI A;  3DNF A;  3T0F A;  3KEF A;  2P5C A;  2CBF A;  2PCH A;  2E4R A;  2PCI A;  2Z6R A;  2HR8 A;  2DXW A;  2DXX A;  2EKA A;  2P9D A;  1PJT A;  2QBU A;  2E4N A;  2EJZ A;  3NUT A;  2YBQ A;  2EK7 A;  1CBF A;  2DV5 A;  2E0K A;  3NEI A;  2NPN A;  3FFY A;  2E8Q A;  2E17 A;  2PB5 A;  2EH4 A;  2EH5 A;  1VCE A;  2P5F A;  3SZU A;  3KE9 A;  4MUY A;  3UV7 A;  2OWK A;  3I4T A;  1VHV A;  4E16 A;  4H4E A;  1VE2 A;  2EMR A;  2ELE A;  3NDC A;  2EL2 A;  4H4D A;  1S4D A;  4N7B A;  2PCG A;  3UTC A;  2HUV A;  3KWP A;  2EL1 A;  4MUX A;  2EGS A;  2PCA A;  3KEM A;  2E7R A;  1WYZ A;  3ND1 A;  3HH1 A;  2E15 A;  3UWM A;  2PCK A;  3TIX B;  3KE8 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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