The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
76
|
sequence length |
265
|
structure length |
265
|
Chain Sequence |
MVLYFIGLGLYDERDITVKGLMIAKKCDYVFAEFYTSLMAGTTLGRIQKLIGKEIRVLSREDVELNFENIVLPLAKENDVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSIYSAVGITGLHIYKFGKSATVAYPEGNWFPTSYYDVIKENAERGLHTLLFLDIKAEKRMYMTANEAMELLLKVEDMKKGGVFTDDTLVVVLARAGSLNPTIRAGYVKDLIREDFGDPPHILIVPGKLHIVEAEYLVEIAGAPREILRVNV
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Crystal structure of PH0725 from Pyrococcus horikoshii OT3
rcsb |
| molecule tags |
Transferase
|
| source organism |
Pyrococcus horikoshii
|
| molecule keywords |
diphthine synthase
|
| total genus |
76
|
| structure length |
265
|
| sequence length |
265
|
| chains with identical sequence |
B
|
| ec nomenclature |
ec
2.1.1.98: Diphthine synthase. |
| pdb deposition date | 2007-03-17 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00590 | TP_methylase | Tetrapyrrole (Corrin/Porphyrin) Methylases |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 2-Layer Sandwich | Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 | Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 | ||
| Alpha Beta | 3-Layer(aba) Sandwich | Cobalt-precorrin-4 Transmethylase; domain 1 | Cobalt-precorrin-4 Transmethylase; Domain 1 |
#chains in the Genus database with same CATH superfamily 2DSG A; 3KWP A; 2PB6 A; 2HR8 A; 2DV7 A; 2EGS A; 2PCA A; 1PJQ A; 2EJJ A; 3I4T A; 2DSH A; 2YBO A; 2ENI A; 1PJT A; 2DXX A; 1WDE A; 2PCI A; 2DV5 A; 2DV4 A; 2CBF A; 2PB5 A; 2EN5 A; 1WNG A; 2E7R A; 2E0N A; 2P5F A; 2OWV A; 3FQ6 A; 2DEK A; 2EH2 A; 3FFY A; 2YBQ A; 2PCG A; 2E8Q A; 2HUT A; 2E0K A; 2EJK A; 2EGB A; 2PCH A; 1PJS A; 2EKA A; 2EL3 A; 2QBU A; 2ZVC A; 2Z6R A; 2EHC A; 2P6I A; 2ZVB A; 2EHL A; 2EK2 A; 2EH4 A; 2EMR A; 2HUX A; 2EL0 A; 2P9D A; 2DSI A; 2EEQ A; 1WYZ A; 2P6D A; 5HW4 A; 2HUV A; 2E15 A; 2E4N A; 2ELE A; 1CBF A; 2DV3 A; 3ND1 A; 4E16 A; 2P2X A; 2OWK A; 2PCM A; 2PB4 A; 2EK4 A; 2ED5 A; 1VA0 A; 2EL1 A; 2ELD A; 2EMU A; 2NPN A; 1VHV A; 3NUT A; 2E4R A; 1V9A A; 2EK3 A; 2P6K A; 2DXV A; 2E08 A; 2OWF A; 1S4D A; 2P5C A; 2EK7 A; 2E8R A; 1VCE A; 2E16 A; 2E8H A; 3NDC A; 2E07 A; 3HH1 A; 2P6L A; 1VE2 A; 2DXW A; 2EGL A; 2HUQ A; 2ED3 A; 2OWG A; 2E8S A; 2EL2 A; 2OWU A; 2EH5 A; 2PCK A; 2EJZ A; 2BB3 A; 2E17 A; 3NEI A; #chains in the Genus database with same CATH topology 2DSG A; 3KWP A; 2PB6 A; 2HR8 A; 2DV7 A; 3KEL A; 2EGS A; 2PCA A; 1PJQ A; 2EJJ A; 3I4T A; 2DSH A; 2YBO A; 2ENI A; 1PJT A; 2DXX A; 1WDE A; 2PCI A; 3LMM A; 3SZO A; 2DV5 A; 4H4E A; 2DV4 A; 3F7T A; 2CBF A; 2PB5 A; 2EN5 A; 1WNG A; 2E7R A; 3KE8 A; 2E0N A; 2P5F A; 2OWV A; 3FQ6 A; 2KYY A; 2DEK A; 2EH2 A; 3FFY A; 2YBQ A; 2PCG A; 3KEF A; 3T0F A; 3UV3 A; 2E8Q A; 2HUT A; 2E0K A; 2EJK A; 3UV7 A; 2EGB A; 2PCH A; 1PJS A; 2EKA A; 2EL3 A; 2QBU A; 2ZVC A; 4EB3 A; 4N7B A; 2Z6R A; 3KE9 A; 2EHC A; 2P6I A; 2ZVB A; 2EHL A; 2EK2 A; 2EH4 A; 2EMR A; 2HUX A; 2EL0 A; 3SZU A; 2P9D A; 2DSI A; 2EEQ A; 1WYZ A; 2P6D A; 5HW4 A; 2HUV A; 2E15 A; 2E4N A; 2ELE A; 1CBF A; 2DV3 A; 3ND1 A; 4E16 A; 4H4D A; 2P2X A; 3KEM A; 2OWK A; 2PCM A; 2PB4 A; 2EK4 A; 2ED5 A; 1VA0 A; 2EL1 A; 2ELD A; 3UWM A; 2EMU A; 3URK A; 2NPN A; 3T0G A; 1VHV A; 3NUT A; 2E4R A; 3DNF A; 4MUY A; 1V9A A; 3SZL A; 2EK3 A; 4MUX A; 3ZGN A; 2P6K A; 2DXV A; 2E08 A; 4MV5 A; 2OWF A; 1S4D A; 2P5C A; 2EK7 A; 4H4C A; 2E8R A; 3TIX B; 1VCE A; 2E16 A; 2E8H A; 3NDC A; 2E07 A; 3HH1 A; 2P6L A; 3UV6 A; 1VE2 A; 2DXW A; 2EGL A; 3UTC A; 2HUQ A; 2ED3 A; 2OWG A; 2E8S A; 3ZGL A; 4MV0 A; 2EL2 A; 3UTD A; 2OWU A; 2EH5 A; 2PCK A; 2EJZ A; 2BB3 A; 2E17 A; 3NEI A; #chains in the Genus database with same CATH homology 2DSG A; 3KWP A; 2PB6 A; 2HR8 A; 2DV7 A; 3KEL A; 2EGS A; 2PCA A; 1PJQ A; 2EJJ A; 3I4T A; 2DSH A; 2YBO A; 2ENI A; 1PJT A; 2DXX A; 1WDE A; 2PCI A; 3LMM A; 3SZO A; 2DV5 A; 4H4E A; 2DV4 A; 3F7T A; 2CBF A; 2PB5 A; 2EN5 A; 1WNG A; 2E7R A; 3KE8 A; 2E0N A; 2P5F A; 2OWV A; 3FQ6 A; 2KYY A; 2DEK A; 2EH2 A; 3FFY A; 2YBQ A; 2PCG A; 3KEF A; 3T0F A; 3UV3 A; 2E8Q A; 2HUT A; 2E0K A; 2EJK A; 3UV7 A; 2EGB A; 2PCH A; 1PJS A; 2EKA A; 2EL3 A; 2QBU A; 2ZVC A; 4EB3 A; 4N7B A; 2Z6R A; 3KE9 A; 2EHC A; 2P6I A; 2ZVB A; 2EHL A; 2EK2 A; 2EH4 A; 2EMR A; 2HUX A; 2EL0 A; 3SZU A; 2P9D A; 2DSI A; 2EEQ A; 1WYZ A; 2P6D A; 5HW4 A; 2HUV A; 2E15 A; 2E4N A; 2ELE A; 1CBF A; 2DV3 A; 3ND1 A; 4E16 A; 4H4D A; 2P2X A; 3KEM A; 2OWK A; 2PCM A; 2PB4 A; 2EK4 A; 2ED5 A; 1VA0 A; 2EL1 A; 2ELD A; 3UWM A; 2EMU A; 3URK A; 2NPN A; 3T0G A; 1VHV A; 3NUT A; 2E4R A; 3DNF A; 4MUY A; 1V9A A; 3SZL A; 2EK3 A; 4MUX A; 3ZGN A; 2P6K A; 2DXV A; 2E08 A; 4MV5 A; 2OWF A; 1S4D A; 2P5C A; 2EK7 A; 4H4C A; 2E8R A; 3TIX B; 1VCE A; 2E16 A; 2E8H A; 3NDC A; 2E07 A; 3HH1 A; 2P6L A; 3UV6 A; 1VE2 A; 2DXW A; 2EGL A; 3UTC A; 2HUQ A; 2ED3 A; 2OWG A; 2E8S A; 3ZGL A; 4MV0 A; 2EL2 A; 3UTD A; 2OWU A; 2EH5 A; 2PCK A; 2EJZ A; 2BB3 A; 2E17 A; 3NEI A;
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