2P6DA

Crystal structure of ph0725 from pyrococcus horikoshii ot3
Total Genus 76
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
76
sequence length
265
structure length
265
Chain Sequence
MVLYFIGLGLYDERDITVKGLMIAKKCDYVFAEFYTSLMAGTTLGRIQKLIGKEIRVLSREDVELNFENIVLPLAKENDVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSIYSAVGITGLHIYKFGKSATVAYPEGNWFPTSYYDVIKENAERGLHTLLFLDIKAEKRMYMTANEAMELLLKVEDMKKGGVFTDDTLVVVLARAGSLNPTIRAGYVKDLIREDFGDPPHILIVPGKLHIVEAEYLVEIAGAPREILRVNV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of PH0725 from Pyrococcus horikoshii OT3
rcsb
source organism Pyrococcus horikoshii
molecule tags Transferase
molecule keywords diphthine synthase
total genus 76
structure length 265
sequence length 265
chains with identical sequence B
ec nomenclature ec 2.1.1.98: Diphthine synthase.
pdb deposition date 2007-03-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00590 TP_methylase Tetrapyrrole (Corrin/Porphyrin) Methylases
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.950.10 Alpha Beta 2-Layer Sandwich Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 2p6dA02
3.40.1010.10 Alpha Beta 3-Layer(aba) Sandwich Cobalt-precorrin-4 Transmethylase; domain 1 Cobalt-precorrin-4 Transmethylase; Domain 1 2p6dA01
2HUTA 2EL1A 2E15A 2EKAA 1VHVA 2E0KA 2E08A 2PCIA 3FQ6A 2E07A 3NUTA 3FFYA 2E8QA 2PB5A 2ED3A 2EMRA 3ND1A 2P6LA 3NEIA 2YBOA 2PCGA 1WNGA 2ENIA 2DXWA 2E8HA 2PCAA 1WDEA 2DSGA 2DSHA 1PJTA 3KWPA 2DV4A 2EK4A 2EMUA 2EL0A 2ZVBA 2ELEA 2EGSA 2P5FA 2E7RA 2PB6A 2EH2A 2EL3A 2YBQA 2ZVCA 2HUQA 2OWUA 2P6DA 2BB3A 2P6KA 2EK7A 2DXVA 1CBFA 2E17A 1VCEA 2E16A 2DSIA 2DV3A 2HUVA 2DV7A 2EK3A 2E8SA 1PJQA 2EJJA 2OWVA 5HW4A 3I4TA 2QBUA 2P2XA 2EL2A 3HH1A 2E4NA 2CBFA 2P5CA 2EHCA 2DEKA 1S4DA 2EHLA 1V9AA 2DXXA 2EN5A 2OWFA 2ED5A 2EJZA 2P6IA 2Z6RA 1WYZA 4E16A 2OWKA 2EGLA 2PCKA 2EJKA 2E4RA 2EEQA 2EK2A 2DV5A 2HUXA 2ELDA 1VA0A 2PB4A 2HR8A 2E0NA 2OWGA 1VE2A 2EH4A 2EGBA 2E8RA 2NPNA 3NDCA 2PCHA 2PCMA 1PJSA 2P9DA 2EH5A
chains in the Genus database with same CATH superfamily
4H4CA 3UV3A 3F7TA 2HUTA 2EL1A 2E15A 2EKAA 1VHVA 2E0KA 2E08A 3LMMA 2PCIA 3FQ6A 2E07A 3NUTA 3SZUA 3FFYA 2E8QA 2PB5A 2ED3A 2EMRA 3URKA 3ND1A 2P6LA 3NEIA 2YBOA 2PCGA 1WNGA 2ENIA 2DXWA 2E8HA 2PCAA 1WDEA 2DSGA 2DSHA 1PJTA 3TIXB 3KELA 3KWPA 2DV4A 2EK4A 2EMUA 2EL0A 4H4EA 2ZVBA 3KEMA 2ELEA 2EGSA 2P5FA 2E7RA 2PB6A 2EH2A 2EL3A 4MV0A 4N7BA 2YBQA 2ZVCA 2HUQA 2OWUA 2P6DA 2BB3A 3T0GA 3SZOA 2P6KA 4MUYA 4MV5A 2EK7A 2DXVA 1CBFA 2E17A 1VCEA 2E16A 3DNFA 2DSIA 2DV3A 2HUVA 3UWMA 2DV7A 2EK3A 2E8SA 1PJQA 2KYYA 2EJJA 2OWVA 5HW4A 3UV7A 3I4TA 2QBUA 2P2XA 2EL2A 3HH1A 2E4NA 2CBFA 2P5CA 3KEFA 2EHCA 2DEKA 3ZGLA 1S4DA 2EHLA 1V9AA 2DXXA 2EN5A 2OWFA 3KE8A 3UTDA 2ED5A 4H4DA 2P6IA 2EJZA 2Z6RA 1WYZA 4E16A 2OWKA 3T0FA 2EGLA 2PCKA 2EJKA 3UTCA 2E4RA 2EEQA 2EK2A 2DV5A 2HUXA 2ELDA 4EB3A 1VA0A 2PB4A 4MUXA 3SZLA 2HR8A 2E0NA 2OWGA 3KE9A 1VE2A 2EH4A 2EGBA 2E8RA 2NPNA 3NDCA 2PCHA 2PCMA 1PJSA 2P9DA 2EH5A 3ZGNA 3UV6A
chains in the Genus database with same CATH topology
4H4CA 3UV3A 3F7TA 2HUTA 2EL1A 2E15A 2EKAA 1VHVA 2E0KA 2E08A 3LMMA 2PCIA 3FQ6A 2E07A 3NUTA 3SZUA 3FFYA 2E8QA 2PB5A 2ED3A 2EMRA 3URKA 3ND1A 2P6LA 3NEIA 2YBOA 2PCGA 1WNGA 2ENIA 2DXWA 2E8HA 2PCAA 1WDEA 2DSGA 2DSHA 1PJTA 3TIXB 3KELA 3KWPA 2DV4A 2EK4A 2EMUA 2EL0A 4H4EA 2ZVBA 3KEMA 2ELEA 2EGSA 2P5FA 2E7RA 2PB6A 2EH2A 2EL3A 4MV0A 4N7BA 2YBQA 2ZVCA 2HUQA 2OWUA 2P6DA 2BB3A 3T0GA 3SZOA 2P6KA 4MUYA 4MV5A 2EK7A 2DXVA 1CBFA 2E17A 1VCEA 2E16A 3DNFA 2DSIA 2DV3A 2HUVA 3UWMA 2DV7A 2EK3A 2E8SA 1PJQA 2KYYA 2EJJA 2OWVA 5HW4A 3UV7A 3I4TA 2QBUA 2P2XA 2EL2A 3HH1A 2E4NA 2CBFA 2P5CA 3KEFA 2EHCA 2DEKA 3ZGLA 1S4DA 2EHLA 1V9AA 2DXXA 2EN5A 2OWFA 3KE8A 3UTDA 2ED5A 4H4DA 2P6IA 2EJZA 2Z6RA 1WYZA 4E16A 2OWKA 3T0FA 2EGLA 2PCKA 2EJKA 3UTCA 2E4RA 2EEQA 2EK2A 2DV5A 2HUXA 2ELDA 4EB3A 1VA0A 2PB4A 4MUXA 3SZLA 2HR8A 2E0NA 2OWGA 3KE9A 1VE2A 2EH4A 2EGBA 2E8RA 2NPNA 3NDCA 2PCHA 2PCMA 1PJSA 2P9DA 2EH5A 3ZGNA 3UV6A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2HUT A;  2EL1 A;  2E15 A;  2EKA A;  1VHV A;  2E0K A;  2E08 A;  2PCI A;  3FQ6 A;  2E07 A;  3NUT A;  3FFY A;  2E8Q A;  2PB5 A;  2ED3 A;  2EMR A;  3ND1 A;  2P6L A;  3NEI A;  2YBO A;  2PCG A;  1WNG A;  2ENI A;  2DXW A;  2E8H A;  2PCA A;  1WDE A;  2DSG A;  2DSH A;  1PJT A;  3KWP A;  2DV4 A;  2EK4 A;  2EMU A;  2EL0 A;  2ZVB A;  2ELE A;  2EGS A;  2P5F A;  2E7R A;  2PB6 A;  2EH2 A;  2EL3 A;  2YBQ A;  2ZVC A;  2HUQ A;  2OWU A;  2P6D A;  2BB3 A;  2P6K A;  2EK7 A;  2DXV A;  1CBF A;  2E17 A;  1VCE A;  2E16 A;  2DSI A;  2DV3 A;  2HUV A;  2DV7 A;  2EK3 A;  2E8S A;  1PJQ A;  2EJJ A;  2OWV A;  5HW4 A;  3I4T A;  2QBU A;  2P2X A;  2EL2 A;  3HH1 A;  2E4N A;  2CBF A;  2P5C A;  2EHC A;  2DEK A;  1S4D A;  2EHL A;  1V9A A;  2DXX A;  2EN5 A;  2OWF A;  2ED5 A;  2EJZ A;  2P6I A;  2Z6R A;  1WYZ A;  4E16 A;  2OWK A;  2EGL A;  2PCK A;  2EJK A;  2E4R A;  2EEQ A;  2EK2 A;  2DV5 A;  2HUX A;  2ELD A;  1VA0 A;  2PB4 A;  2HR8 A;  2E0N A;  2OWG A;  1VE2 A;  2EH4 A;  2EGB A;  2E8R A;  2NPN A;  3NDC A;  2PCH A;  2PCM A;  1PJS A;  2P9D A;  2EH5 A; 
#chains in the Genus database with same CATH topology
 4H4C A;  3UV3 A;  3F7T A;  2HUT A;  2EL1 A;  2E15 A;  2EKA A;  1VHV A;  2E0K A;  2E08 A;  3LMM A;  2PCI A;  3FQ6 A;  2E07 A;  3NUT A;  3SZU A;  3FFY A;  2E8Q A;  2PB5 A;  2ED3 A;  2EMR A;  3URK A;  3ND1 A;  2P6L A;  3NEI A;  2YBO A;  2PCG A;  1WNG A;  2ENI A;  2DXW A;  2E8H A;  2PCA A;  1WDE A;  2DSG A;  2DSH A;  1PJT A;  3TIX B;  3KEL A;  3KWP A;  2DV4 A;  2EK4 A;  2EMU A;  2EL0 A;  4H4E A;  2ZVB A;  3KEM A;  2ELE A;  2EGS A;  2P5F A;  2E7R A;  2PB6 A;  2EH2 A;  2EL3 A;  4MV0 A;  4N7B A;  2YBQ A;  2ZVC A;  2HUQ A;  2OWU A;  2P6D A;  2BB3 A;  3T0G A;  3SZO A;  2P6K A;  4MUY A;  4MV5 A;  2EK7 A;  2DXV A;  1CBF A;  2E17 A;  1VCE A;  2E16 A;  3DNF A;  2DSI A;  2DV3 A;  2HUV A;  3UWM A;  2DV7 A;  2EK3 A;  2E8S A;  1PJQ A;  2KYY A;  2EJJ A;  2OWV A;  5HW4 A;  3UV7 A;  3I4T A;  2QBU A;  2P2X A;  2EL2 A;  3HH1 A;  2E4N A;  2CBF A;  2P5C A;  3KEF A;  2EHC A;  2DEK A;  3ZGL A;  1S4D A;  2EHL A;  1V9A A;  2DXX A;  2EN5 A;  2OWF A;  3KE8 A;  3UTD A;  2ED5 A;  4H4D A;  2P6I A;  2EJZ A;  2Z6R A;  1WYZ A;  4E16 A;  2OWK A;  3T0F A;  2EGL A;  2PCK A;  2EJK A;  3UTC A;  2E4R A;  2EEQ A;  2EK2 A;  2DV5 A;  2HUX A;  2ELD A;  4EB3 A;  1VA0 A;  2PB4 A;  4MUX A;  3SZL A;  2HR8 A;  2E0N A;  2OWG A;  3KE9 A;  1VE2 A;  2EH4 A;  2EGB A;  2E8R A;  2NPN A;  3NDC A;  2PCH A;  2PCM A;  1PJS A;  2P9D A;  2EH5 A;  3ZGN A;  3UV6 A; 
#chains in the Genus database with same CATH homology
 4H4C A;  3UV3 A;  3F7T A;  2HUT A;  2EL1 A;  2E15 A;  2EKA A;  1VHV A;  2E0K A;  2E08 A;  3LMM A;  2PCI A;  3FQ6 A;  2E07 A;  3NUT A;  3SZU A;  3FFY A;  2E8Q A;  2PB5 A;  2ED3 A;  2EMR A;  3URK A;  3ND1 A;  2P6L A;  3NEI A;  2YBO A;  2PCG A;  1WNG A;  2ENI A;  2DXW A;  2E8H A;  2PCA A;  1WDE A;  2DSG A;  2DSH A;  1PJT A;  3TIX B;  3KEL A;  3KWP A;  2DV4 A;  2EK4 A;  2EMU A;  2EL0 A;  4H4E A;  2ZVB A;  3KEM A;  2ELE A;  2EGS A;  2P5F A;  2E7R A;  2PB6 A;  2EH2 A;  2EL3 A;  4MV0 A;  4N7B A;  2YBQ A;  2ZVC A;  2HUQ A;  2OWU A;  2P6D A;  2BB3 A;  3T0G A;  3SZO A;  2P6K A;  4MUY A;  4MV5 A;  2EK7 A;  2DXV A;  1CBF A;  2E17 A;  1VCE A;  2E16 A;  3DNF A;  2DSI A;  2DV3 A;  2HUV A;  3UWM A;  2DV7 A;  2EK3 A;  2E8S A;  1PJQ A;  2KYY A;  2EJJ A;  2OWV A;  5HW4 A;  3UV7 A;  3I4T A;  2QBU A;  2P2X A;  2EL2 A;  3HH1 A;  2E4N A;  2CBF A;  2P5C A;  3KEF A;  2EHC A;  2DEK A;  3ZGL A;  1S4D A;  2EHL A;  1V9A A;  2DXX A;  2EN5 A;  2OWF A;  3KE8 A;  3UTD A;  2ED5 A;  4H4D A;  2P6I A;  2EJZ A;  2Z6R A;  1WYZ A;  4E16 A;  2OWK A;  3T0F A;  2EGL A;  2PCK A;  2EJK A;  3UTC A;  2E4R A;  2EEQ A;  2EK2 A;  2DV5 A;  2HUX A;  2ELD A;  4EB3 A;  1VA0 A;  2PB4 A;  4MUX A;  3SZL A;  2HR8 A;  2E0N A;  2OWG A;  3KE9 A;  1VE2 A;  2EH4 A;  2EGB A;  2E8R A;  2NPN A;  3NDC A;  2PCH A;  2PCM A;  1PJS A;  2P9D A;  2EH5 A;  3ZGN A;  3UV6 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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