2P6IA

Crystal structure of ph0725 from pyrococcus horikoshii ot3
Total Genus 81
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
81
sequence length
265
structure length
265
Chain Sequence
b'MVLYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQKLIGKEIRVLSREDVELNFENIVLPLAKENDVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSIYSAVGITGLHIYKFGKSATVAYPEGNWFPTSYYDVIKENAERGLHTLLFLDIKAEKRMYMTANEAMELLLKVEDMKKGGVFTDDTLVVVLARAGSLNPTIRAGYVKDLIREDFGDPPHILIVPGKLHIVEAEYLVEIAGAPRMILRVNV'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords diphthine synthase
publication title Crystal structure of PH0725 from Pyrococcus horikoshii OT3
rcsb
source organism Pyrococcus horikoshii
molecule tags Transferase
total genus 81
structure length 265
sequence length 265
chains with identical sequence B
ec nomenclature ec 2.1.1.98: Diphthine synthase.
pdb deposition date 2007-03-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00590 TP_methylase Tetrapyrrole (Corrin/Porphyrin) Methylases
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.950.10 Alpha Beta 2-Layer Sandwich Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 2p6iA02
3.40.1010.10 Alpha Beta 3-Layer(aba) Sandwich Cobalt-precorrin-4 Transmethylase; domain 1 Cobalt-precorrin-4 Transmethylase; Domain 1 2p6iA01
2PB4A 2OWUA 2HUTA 2P6DA 3FQ6A 1S4DA 2EN5A 3NUTA 2HUQA 3ND1A 1WDEA 2EEQA 2DV4A 2E8SA 2E15A 2DV3A 2OWVA 2DXVA 2EH4A 2PCKA 1CBFA 2P2XA 2EL1A 2EHCA 3FFYA 3KWPA 2YBOA 2EGLA 2ELDA 2P5FA 2P5CA 2ZVCA 2E0NA 2EH2A 2EK2A 2OWFA 1WYZA 2PCIA 2EH5A 2NPNA 2OWKA 2ZVBA 2P6IA 4E16A 1PJQA 2PCGA 2EK7A 2EL0A 2PCAA 2P6LA 2E16A 2EGBA 3NDCA 2HUVA 1PJSA 2DEKA 2DSHA 1VCEA 2DSGA 2E4RA 2OWGA 2EJJA 2P6KA 2EL2A 2E0KA 2E07A 2BB3A 2EK3A 3NEIA 2E8HA 2EL3A 2ENIA 2PB6A 2PCMA 2Z6RA 3I4TA 2PB5A 2EJKA 2DSIA 2E8RA 2DXWA 2EJZA 2ED3A 2HR8A 2ELEA 2E4NA 2EKAA 2DV5A 2E8QA 2E08A 2CBFA 1VA0A 2EK4A 2YBQA 2EMUA 2EGSA 3HH1A 2HUXA 1VHVA 2P9DA 1PJTA 1V9AA 2EMRA 2E17A 2QBUA 1WNGA 1VE2A 2DV7A 2DXXA 2EHLA 2ED5A 2E7RA 5HW4A 2PCHA
chains in the Genus database with same CATH superfamily
2PB4A 2OWUA 2HUTA 2P6DA 3FQ6A 1S4DA 2EN5A 3NUTA 2HUQA 3ND1A 1WDEA 2EEQA 3KEFA 2DV4A 2E8SA 2E15A 2DV3A 2OWVA 4EB3A 2DXVA 2EH4A 2PCKA 1CBFA 2P2XA 2EL1A 2EHCA 3F7TA 3FFYA 3KWPA 3LMMA 2YBOA 2EGLA 2ELDA 2P5FA 2P5CA 2ZVCA 2E0NA 3TIXB 2EH2A 2EK2A 2OWFA 1WYZA 2PCIA 2EH5A 2NPNA 2OWKA 2ZVBA 2P6IA 4E16A 1PJQA 2PCGA 2EK7A 4H4DA 2EL0A 2PCAA 4MV5A 2P6LA 2E16A 3KELA 2EGBA 3NDCA 3UTCA 3DNFA 3UV7A 3UV3A 2HUVA 1PJSA 2DEKA 2KYYA 2DSHA 1VCEA 3ZGNA 2DSGA 2E4RA 3KEMA 3KE8A 3UV6A 3URKA 2OWGA 2EJJA 2P6KA 2EL2A 2E0KA 2E07A 2BB3A 2EK3A 3NEIA 2E8HA 3SZOA 2EL3A 2ENIA 2PB6A 2PCMA 2Z6RA 3I4TA 2PB5A 2EJKA 2DSIA 2E8RA 2DXWA 2EJZA 2ED3A 2HR8A 2ELEA 3ZGLA 2E4NA 2EKAA 2DV5A 2E8QA 2E08A 2CBFA 1VA0A 4MV0A 2EK4A 2YBQA 2EMUA 3SZUA 2EGSA 3HH1A 4MUYA 2HUXA 1VHVA 4MUXA 2P9DA 4N7BA 3SZLA 1PJTA 1V9AA 3KE9A 2EMRA 2E17A 3T0FA 2QBUA 1WNGA 1VE2A 3T0GA 2DV7A 2DXXA 4H4EA 3UWMA 2EHLA 2ED5A 2E7RA 5HW4A 2PCHA 3UTDA 4H4CA
chains in the Genus database with same CATH topology
2PB4A 2OWUA 2HUTA 2P6DA 3FQ6A 1S4DA 2EN5A 3NUTA 2HUQA 3ND1A 1WDEA 2EEQA 3KEFA 2DV4A 2E8SA 2E15A 2DV3A 2OWVA 4EB3A 2DXVA 2EH4A 2PCKA 1CBFA 2P2XA 2EL1A 2EHCA 3F7TA 3FFYA 3KWPA 3LMMA 2YBOA 2EGLA 2ELDA 2P5FA 2P5CA 2ZVCA 2E0NA 3TIXB 2EH2A 2EK2A 2OWFA 1WYZA 2PCIA 2EH5A 2NPNA 2OWKA 2ZVBA 2P6IA 4E16A 1PJQA 2PCGA 2EK7A 4H4DA 2EL0A 2PCAA 4MV5A 2P6LA 2E16A 3KELA 2EGBA 3NDCA 3UTCA 3DNFA 3UV7A 3UV3A 2HUVA 1PJSA 2DEKA 2KYYA 2DSHA 1VCEA 3ZGNA 2DSGA 2E4RA 3KEMA 3KE8A 3UV6A 3URKA 2OWGA 2EJJA 2P6KA 2EL2A 2E0KA 2E07A 2BB3A 2EK3A 3NEIA 2E8HA 3SZOA 2EL3A 2ENIA 2PB6A 2PCMA 2Z6RA 3I4TA 2PB5A 2EJKA 2DSIA 2E8RA 2DXWA 2EJZA 2ED3A 2HR8A 2ELEA 3ZGLA 2E4NA 2EKAA 2DV5A 2E8QA 2E08A 2CBFA 1VA0A 4MV0A 2EK4A 2YBQA 2EMUA 3SZUA 2EGSA 3HH1A 4MUYA 2HUXA 1VHVA 4MUXA 2P9DA 4N7BA 3SZLA 1PJTA 1V9AA 3KE9A 2EMRA 2E17A 3T0FA 2QBUA 1WNGA 1VE2A 3T0GA 2DV7A 2DXXA 4H4EA 3UWMA 2EHLA 2ED5A 2E7RA 5HW4A 2PCHA 3UTDA 4H4CA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2PB4 A;  2OWU A;  2HUT A;  2P6D A;  3FQ6 A;  1S4D A;  2EN5 A;  3NUT A;  2HUQ A;  3ND1 A;  1WDE A;  2EEQ A;  2DV4 A;  2E8S A;  2E15 A;  2DV3 A;  2OWV A;  2DXV A;  2EH4 A;  2PCK A;  1CBF A;  2P2X A;  2EL1 A;  2EHC A;  3FFY A;  3KWP A;  2YBO A;  2EGL A;  2ELD A;  2P5F A;  2P5C A;  2ZVC A;  2E0N A;  2EH2 A;  2EK2 A;  2OWF A;  1WYZ A;  2PCI A;  2EH5 A;  2NPN A;  2OWK A;  2ZVB A;  2P6I A;  4E16 A;  1PJQ A;  2PCG A;  2EK7 A;  2EL0 A;  2PCA A;  2P6L A;  2E16 A;  2EGB A;  3NDC A;  2HUV A;  1PJS A;  2DEK A;  2DSH A;  1VCE A;  2DSG A;  2E4R A;  2OWG A;  2EJJ A;  2P6K A;  2EL2 A;  2E0K A;  2E07 A;  2BB3 A;  2EK3 A;  3NEI A;  2E8H A;  2EL3 A;  2ENI A;  2PB6 A;  2PCM A;  2Z6R A;  3I4T A;  2PB5 A;  2EJK A;  2DSI A;  2E8R A;  2DXW A;  2EJZ A;  2ED3 A;  2HR8 A;  2ELE A;  2E4N A;  2EKA A;  2DV5 A;  2E8Q A;  2E08 A;  2CBF A;  1VA0 A;  2EK4 A;  2YBQ A;  2EMU A;  2EGS A;  3HH1 A;  2HUX A;  1VHV A;  2P9D A;  1PJT A;  1V9A A;  2EMR A;  2E17 A;  2QBU A;  1WNG A;  1VE2 A;  2DV7 A;  2DXX A;  2EHL A;  2ED5 A;  2E7R A;  5HW4 A;  2PCH A; 
#chains in the Genus database with same CATH topology
 2PB4 A;  2OWU A;  2HUT A;  2P6D A;  3FQ6 A;  1S4D A;  2EN5 A;  3NUT A;  2HUQ A;  3ND1 A;  1WDE A;  2EEQ A;  3KEF A;  2DV4 A;  2E8S A;  2E15 A;  2DV3 A;  2OWV A;  4EB3 A;  2DXV A;  2EH4 A;  2PCK A;  1CBF A;  2P2X A;  2EL1 A;  2EHC A;  3F7T A;  3FFY A;  3KWP A;  3LMM A;  2YBO A;  2EGL A;  2ELD A;  2P5F A;  2P5C A;  2ZVC A;  2E0N A;  3TIX B;  2EH2 A;  2EK2 A;  2OWF A;  1WYZ A;  2PCI A;  2EH5 A;  2NPN A;  2OWK A;  2ZVB A;  2P6I A;  4E16 A;  1PJQ A;  2PCG A;  2EK7 A;  4H4D A;  2EL0 A;  2PCA A;  4MV5 A;  2P6L A;  2E16 A;  3KEL A;  2EGB A;  3NDC A;  3UTC A;  3DNF A;  3UV7 A;  3UV3 A;  2HUV A;  1PJS A;  2DEK A;  2KYY A;  2DSH A;  1VCE A;  3ZGN A;  2DSG A;  2E4R A;  3KEM A;  3KE8 A;  3UV6 A;  3URK A;  2OWG A;  2EJJ A;  2P6K A;  2EL2 A;  2E0K A;  2E07 A;  2BB3 A;  2EK3 A;  3NEI A;  2E8H A;  3SZO A;  2EL3 A;  2ENI A;  2PB6 A;  2PCM A;  2Z6R A;  3I4T A;  2PB5 A;  2EJK A;  2DSI A;  2E8R A;  2DXW A;  2EJZ A;  2ED3 A;  2HR8 A;  2ELE A;  3ZGL A;  2E4N A;  2EKA A;  2DV5 A;  2E8Q A;  2E08 A;  2CBF A;  1VA0 A;  4MV0 A;  2EK4 A;  2YBQ A;  2EMU A;  3SZU A;  2EGS A;  3HH1 A;  4MUY A;  2HUX A;  1VHV A;  4MUX A;  2P9D A;  4N7B A;  3SZL A;  1PJT A;  1V9A A;  3KE9 A;  2EMR A;  2E17 A;  3T0F A;  2QBU A;  1WNG A;  1VE2 A;  3T0G A;  2DV7 A;  2DXX A;  4H4E A;  3UWM A;  2EHL A;  2ED5 A;  2E7R A;  5HW4 A;  2PCH A;  3UTD A;  4H4C A; 
#chains in the Genus database with same CATH homology
 2PB4 A;  2OWU A;  2HUT A;  2P6D A;  3FQ6 A;  1S4D A;  2EN5 A;  3NUT A;  2HUQ A;  3ND1 A;  1WDE A;  2EEQ A;  3KEF A;  2DV4 A;  2E8S A;  2E15 A;  2DV3 A;  2OWV A;  4EB3 A;  2DXV A;  2EH4 A;  2PCK A;  1CBF A;  2P2X A;  2EL1 A;  2EHC A;  3F7T A;  3FFY A;  3KWP A;  3LMM A;  2YBO A;  2EGL A;  2ELD A;  2P5F A;  2P5C A;  2ZVC A;  2E0N A;  3TIX B;  2EH2 A;  2EK2 A;  2OWF A;  1WYZ A;  2PCI A;  2EH5 A;  2NPN A;  2OWK A;  2ZVB A;  2P6I A;  4E16 A;  1PJQ A;  2PCG A;  2EK7 A;  4H4D A;  2EL0 A;  2PCA A;  4MV5 A;  2P6L A;  2E16 A;  3KEL A;  2EGB A;  3NDC A;  3UTC A;  3DNF A;  3UV7 A;  3UV3 A;  2HUV A;  1PJS A;  2DEK A;  2KYY A;  2DSH A;  1VCE A;  3ZGN A;  2DSG A;  2E4R A;  3KEM A;  3KE8 A;  3UV6 A;  3URK A;  2OWG A;  2EJJ A;  2P6K A;  2EL2 A;  2E0K A;  2E07 A;  2BB3 A;  2EK3 A;  3NEI A;  2E8H A;  3SZO A;  2EL3 A;  2ENI A;  2PB6 A;  2PCM A;  2Z6R A;  3I4T A;  2PB5 A;  2EJK A;  2DSI A;  2E8R A;  2DXW A;  2EJZ A;  2ED3 A;  2HR8 A;  2ELE A;  3ZGL A;  2E4N A;  2EKA A;  2DV5 A;  2E8Q A;  2E08 A;  2CBF A;  1VA0 A;  4MV0 A;  2EK4 A;  2YBQ A;  2EMU A;  3SZU A;  2EGS A;  3HH1 A;  4MUY A;  2HUX A;  1VHV A;  4MUX A;  2P9D A;  4N7B A;  3SZL A;  1PJT A;  1V9A A;  3KE9 A;  2EMR A;  2E17 A;  3T0F A;  2QBU A;  1WNG A;  1VE2 A;  3T0G A;  2DV7 A;  2DXX A;  4H4E A;  3UWM A;  2EHL A;  2ED5 A;  2E7R A;  5HW4 A;  2PCH A;  3UTD A;  4H4C A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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