2P6IA

Crystal structure of ph0725 from pyrococcus horikoshii ot3
Total Genus 81
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
81
sequence length
265
structure length
265
Chain Sequence
MVLYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQKLIGKEIRVLSREDVELNFENIVLPLAKENDVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSIYSAVGITGLHIYKFGKSATVAYPEGNWFPTSYYDVIKENAERGLHTLLFLDIKAEKRMYMTANEAMELLLKVEDMKKGGVFTDDTLVVVLARAGSLNPTIRAGYVKDLIREDFGDPPHILIVPGKLHIVEAEYLVEIAGAPRMILRVNV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords diphthine synthase
publication title Crystal structure of PH0725 from Pyrococcus horikoshii OT3
rcsb
source organism Pyrococcus horikoshii
total genus 81
structure length 265
sequence length 265
chains with identical sequence B
ec nomenclature ec 2.1.1.98: Diphthine synthase.
pdb deposition date 2007-03-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00590 TP_methylase Tetrapyrrole (Corrin/Porphyrin) Methylases
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.950.10 Alpha Beta 2-Layer Sandwich Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 2p6iA02
3.40.1010.10 Alpha Beta 3-Layer(aba) Sandwich Cobalt-precorrin-4 Transmethylase; domain 1 Cobalt-precorrin-4 Transmethylase; Domain 1 2p6iA01
2EH2A 2EL1A 2PCGA 2E07A 2EHLA 1WYZA 2E4NA 1VE2A 2PB4A 2ELDA 2QBUA 2E8HA 2DXVA 2P2XA 2CBFA 2EMRA 2ED5A 2EK3A 2EGBA 2EL3A 2EH4A 2EK7A 2E8QA 2DXXA 4E16A 2E8RA 2E15A 1WNGA 2HR8A 1VHVA 3NDCA 2DV7A 2EKAA 2PCKA 2EL2A 2OWFA 2P9DA 2E7RA 2EHCA 2OWUA 3ND1A 2HUQA 2BB3A 2P6LA 3FQ6A 2EL0A 2EJKA 2DSIA 2PCIA 2EJZA 2EJJA 2DV4A 1PJTA 1WDEA 2E0NA 2NPNA 2ENIA 2DSHA 2ZVCA 2P6KA 2YBQA 2PB6A 2E08A 1VCEA 2EK4A 2ED3A 1PJQA 3FFYA 3NEIA 5HW4A 2Z6RA 2E17A 2PCMA 2DEKA 2DXWA 2EK2A 1V9AA 3I4TA 2DV5A 2PB5A 2PCHA 2YBOA 2DV3A 2P6IA 2P6DA 2EN5A 1VA0A 2ZVBA 2E16A 3KWPA 2E0KA 2P5CA 2OWGA 2DSGA 2OWKA 2ELEA 2E4RA 2E8SA 1S4DA 2P5FA 2EGSA 2EEQA 3NUTA 2OWVA 3HH1A 2EH5A 2EMUA 2HUXA 1PJSA 2EGLA 1CBFA 2HUTA 2HUVA 2PCAA
chains in the Genus database with same CATH superfamily
2EH2A 2EL1A 2PCGA 2E07A 2EHLA 1WYZA 2E4NA 4MV5A 1VE2A 2PB4A 2ELDA 2QBUA 2E8HA 3KEFA 2DXVA 2P2XA 4H4DA 2CBFA 2EMRA 2ED5A 3KE8A 2EK3A 4H4CA 2EGBA 2EL3A 3T0FA 2EH4A 2EK7A 2E8QA 3ZGLA 4MUXA 2DXXA 4E16A 2E8RA 2E15A 1WNGA 2HR8A 3ZGNA 1VHVA 3NDCA 2DV7A 2EKAA 2PCKA 2EL2A 2OWFA 2P9DA 2E7RA 3SZLA 2EHCA 4MUYA 2OWUA 3ND1A 2HUQA 2BB3A 2P6LA 3FQ6A 2EL0A 3UTDA 2EJKA 2DSIA 2PCIA 2EJZA 3LMMA 2EJJA 2DV4A 1PJTA 1WDEA 2E0NA 3SZOA 2NPNA 4H4EA 2ENIA 3UWMA 2DSHA 2ZVCA 3URKA 2P6KA 2YBQA 2PB6A 2E08A 3UV7A 3SZUA 1VCEA 2EK4A 2ED3A 1PJQA 3FFYA 3KEMA 3NEIA 3KE9A 5HW4A 2Z6RA 2E17A 2PCMA 2DEKA 2DXWA 4EB3A 2EK2A 1V9AA 3I4TA 3T0GA 3UTCA 2DV5A 2PB5A 4MV0A 2PCHA 3F7TA 2YBOA 2DV3A 3UV6A 2P6IA 3TIXB 2P6DA 2EN5A 1VA0A 2ZVBA 2E16A 3KELA 2KYYA 3KWPA 2E0KA 2P5CA 2OWGA 2DSGA 2OWKA 2ELEA 2E4RA 2E8SA 1S4DA 2P5FA 3UV3A 2EGSA 2EEQA 3NUTA 2OWVA 4N7BA 3HH1A 2EH5A 2EMUA 2HUXA 3DNFA 1PJSA 2EGLA 1CBFA 2HUTA 2HUVA 2PCAA
chains in the Genus database with same CATH topology
2EH2A 2EL1A 2PCGA 2E07A 2EHLA 1WYZA 2E4NA 4MV5A 1VE2A 2PB4A 2ELDA 2QBUA 2E8HA 3KEFA 2DXVA 2P2XA 4H4DA 2CBFA 2EMRA 2ED5A 3KE8A 2EK3A 4H4CA 2EGBA 2EL3A 3T0FA 2EH4A 2EK7A 2E8QA 3ZGLA 4MUXA 2DXXA 4E16A 2E8RA 2E15A 1WNGA 2HR8A 3ZGNA 1VHVA 3NDCA 2DV7A 2EKAA 2PCKA 2EL2A 2OWFA 2P9DA 2E7RA 3SZLA 2EHCA 4MUYA 2OWUA 3ND1A 2HUQA 2BB3A 2P6LA 3FQ6A 2EL0A 3UTDA 2EJKA 2DSIA 2PCIA 2EJZA 3LMMA 2EJJA 2DV4A 1PJTA 1WDEA 2E0NA 3SZOA 2NPNA 4H4EA 2ENIA 3UWMA 2DSHA 2ZVCA 3URKA 2P6KA 2YBQA 2PB6A 2E08A 3UV7A 3SZUA 1VCEA 2EK4A 2ED3A 1PJQA 3FFYA 3KEMA 3NEIA 3KE9A 5HW4A 2Z6RA 2E17A 2PCMA 2DEKA 2DXWA 4EB3A 2EK2A 1V9AA 3I4TA 3T0GA 3UTCA 2DV5A 2PB5A 4MV0A 2PCHA 3F7TA 2YBOA 2DV3A 3UV6A 2P6IA 3TIXB 2P6DA 2EN5A 1VA0A 2ZVBA 2E16A 3KELA 2KYYA 3KWPA 2E0KA 2P5CA 2OWGA 2DSGA 2OWKA 2ELEA 2E4RA 2E8SA 1S4DA 2P5FA 3UV3A 2EGSA 2EEQA 3NUTA 2OWVA 4N7BA 3HH1A 2EH5A 2EMUA 2HUXA 3DNFA 1PJSA 2EGLA 1CBFA 2HUTA 2HUVA 2PCAA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2EH2 A;  2EL1 A;  2PCG A;  2E07 A;  2EHL A;  1WYZ A;  2E4N A;  1VE2 A;  2PB4 A;  2ELD A;  2QBU A;  2E8H A;  2DXV A;  2P2X A;  2CBF A;  2EMR A;  2ED5 A;  2EK3 A;  2EGB A;  2EL3 A;  2EH4 A;  2EK7 A;  2E8Q A;  2DXX A;  4E16 A;  2E8R A;  2E15 A;  1WNG A;  2HR8 A;  1VHV A;  3NDC A;  2DV7 A;  2EKA A;  2PCK A;  2EL2 A;  2OWF A;  2P9D A;  2E7R A;  2EHC A;  2OWU A;  3ND1 A;  2HUQ A;  2BB3 A;  2P6L A;  3FQ6 A;  2EL0 A;  2EJK A;  2DSI A;  2PCI A;  2EJZ A;  2EJJ A;  2DV4 A;  1PJT A;  1WDE A;  2E0N A;  2NPN A;  2ENI A;  2DSH A;  2ZVC A;  2P6K A;  2YBQ A;  2PB6 A;  2E08 A;  1VCE A;  2EK4 A;  2ED3 A;  1PJQ A;  3FFY A;  3NEI A;  5HW4 A;  2Z6R A;  2E17 A;  2PCM A;  2DEK A;  2DXW A;  2EK2 A;  1V9A A;  3I4T A;  2DV5 A;  2PB5 A;  2PCH A;  2YBO A;  2DV3 A;  2P6I A;  2P6D A;  2EN5 A;  1VA0 A;  2ZVB A;  2E16 A;  3KWP A;  2E0K A;  2P5C A;  2OWG A;  2DSG A;  2OWK A;  2ELE A;  2E4R A;  2E8S A;  1S4D A;  2P5F A;  2EGS A;  2EEQ A;  3NUT A;  2OWV A;  3HH1 A;  2EH5 A;  2EMU A;  2HUX A;  1PJS A;  2EGL A;  1CBF A;  2HUT A;  2HUV A;  2PCA A; 
#chains in the Genus database with same CATH topology
 2EH2 A;  2EL1 A;  2PCG A;  2E07 A;  2EHL A;  1WYZ A;  2E4N A;  4MV5 A;  1VE2 A;  2PB4 A;  2ELD A;  2QBU A;  2E8H A;  3KEF A;  2DXV A;  2P2X A;  4H4D A;  2CBF A;  2EMR A;  2ED5 A;  3KE8 A;  2EK3 A;  4H4C A;  2EGB A;  2EL3 A;  3T0F A;  2EH4 A;  2EK7 A;  2E8Q A;  3ZGL A;  4MUX A;  2DXX A;  4E16 A;  2E8R A;  2E15 A;  1WNG A;  2HR8 A;  3ZGN A;  1VHV A;  3NDC A;  2DV7 A;  2EKA A;  2PCK A;  2EL2 A;  2OWF A;  2P9D A;  2E7R A;  3SZL A;  2EHC A;  4MUY A;  2OWU A;  3ND1 A;  2HUQ A;  2BB3 A;  2P6L A;  3FQ6 A;  2EL0 A;  3UTD A;  2EJK A;  2DSI A;  2PCI A;  2EJZ A;  3LMM A;  2EJJ A;  2DV4 A;  1PJT A;  1WDE A;  2E0N A;  3SZO A;  2NPN A;  4H4E A;  2ENI A;  3UWM A;  2DSH A;  2ZVC A;  3URK A;  2P6K A;  2YBQ A;  2PB6 A;  2E08 A;  3UV7 A;  3SZU A;  1VCE A;  2EK4 A;  2ED3 A;  1PJQ A;  3FFY A;  3KEM A;  3NEI A;  3KE9 A;  5HW4 A;  2Z6R A;  2E17 A;  2PCM A;  2DEK A;  2DXW A;  4EB3 A;  2EK2 A;  1V9A A;  3I4T A;  3T0G A;  3UTC A;  2DV5 A;  2PB5 A;  4MV0 A;  2PCH A;  3F7T A;  2YBO A;  2DV3 A;  3UV6 A;  2P6I A;  3TIX B;  2P6D A;  2EN5 A;  1VA0 A;  2ZVB A;  2E16 A;  3KEL A;  2KYY A;  3KWP A;  2E0K A;  2P5C A;  2OWG A;  2DSG A;  2OWK A;  2ELE A;  2E4R A;  2E8S A;  1S4D A;  2P5F A;  3UV3 A;  2EGS A;  2EEQ A;  3NUT A;  2OWV A;  4N7B A;  3HH1 A;  2EH5 A;  2EMU A;  2HUX A;  3DNF A;  1PJS A;  2EGL A;  1CBF A;  2HUT A;  2HUV A;  2PCA A; 
#chains in the Genus database with same CATH homology
 2EH2 A;  2EL1 A;  2PCG A;  2E07 A;  2EHL A;  1WYZ A;  2E4N A;  4MV5 A;  1VE2 A;  2PB4 A;  2ELD A;  2QBU A;  2E8H A;  3KEF A;  2DXV A;  2P2X A;  4H4D A;  2CBF A;  2EMR A;  2ED5 A;  3KE8 A;  2EK3 A;  4H4C A;  2EGB A;  2EL3 A;  3T0F A;  2EH4 A;  2EK7 A;  2E8Q A;  3ZGL A;  4MUX A;  2DXX A;  4E16 A;  2E8R A;  2E15 A;  1WNG A;  2HR8 A;  3ZGN A;  1VHV A;  3NDC A;  2DV7 A;  2EKA A;  2PCK A;  2EL2 A;  2OWF A;  2P9D A;  2E7R A;  3SZL A;  2EHC A;  4MUY A;  2OWU A;  3ND1 A;  2HUQ A;  2BB3 A;  2P6L A;  3FQ6 A;  2EL0 A;  3UTD A;  2EJK A;  2DSI A;  2PCI A;  2EJZ A;  3LMM A;  2EJJ A;  2DV4 A;  1PJT A;  1WDE A;  2E0N A;  3SZO A;  2NPN A;  4H4E A;  2ENI A;  3UWM A;  2DSH A;  2ZVC A;  3URK A;  2P6K A;  2YBQ A;  2PB6 A;  2E08 A;  3UV7 A;  3SZU A;  1VCE A;  2EK4 A;  2ED3 A;  1PJQ A;  3FFY A;  3KEM A;  3NEI A;  3KE9 A;  5HW4 A;  2Z6R A;  2E17 A;  2PCM A;  2DEK A;  2DXW A;  4EB3 A;  2EK2 A;  1V9A A;  3I4T A;  3T0G A;  3UTC A;  2DV5 A;  2PB5 A;  4MV0 A;  2PCH A;  3F7T A;  2YBO A;  2DV3 A;  3UV6 A;  2P6I A;  3TIX B;  2P6D A;  2EN5 A;  1VA0 A;  2ZVB A;  2E16 A;  3KEL A;  2KYY A;  3KWP A;  2E0K A;  2P5C A;  2OWG A;  2DSG A;  2OWK A;  2ELE A;  2E4R A;  2E8S A;  1S4D A;  2P5F A;  3UV3 A;  2EGS A;  2EEQ A;  3NUT A;  2OWV A;  4N7B A;  3HH1 A;  2EH5 A;  2EMU A;  2HUX A;  3DNF A;  1PJS A;  2EGL A;  1CBF A;  2HUT A;  2HUV A;  2PCA A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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