2P6KA

Crystal structure of ph0725 from pyrococcus horikoshii ot3
Total Genus 82
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
82
sequence length
265
structure length
265
Chain Sequence
b'MVLYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQKLIGKEIRVLSREDVELNFENIVLPLAKENDVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSIYSAVGITGLHIYKFGKSATVMYPEGNWFPTSYYDVIKENAERGLHTLLFLDIKAEKRMYMTANEAMELLLKVEDMKKGGVFTDDTLVVVLARAGSLNPTIRAGYVKDLIREDFGDPPHILIVPGKLHIVEAEYLVEIAGAPREILRVNV'
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule keywords diphthine synthase
publication title Crystal structure of PH0725 from Pyrococcus horikoshii OT3
rcsb
source organism Pyrococcus horikoshii
molecule tags Transferase
total genus 82
structure length 265
sequence length 265
chains with identical sequence B
ec nomenclature ec 2.1.1.98: Diphthine synthase.
pdb deposition date 2007-03-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00590 TP_methylase Tetrapyrrole (Corrin/Porphyrin) Methylases
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.950.10 Alpha Beta 2-Layer Sandwich Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 2p6kA02
3.40.1010.10 Alpha Beta 3-Layer(aba) Sandwich Cobalt-precorrin-4 Transmethylase; domain 1 Cobalt-precorrin-4 Transmethylase; Domain 1 2p6kA01
1PJTA 2NPNA 1VHVA 2EL0A 2ELDA 2PCIA 2PCMA 2DV4A 2EEQA 2Z6RA 2EK2A 2P6DA 3FQ6A 2E8SA 2EGLA 2EH2A 2PCGA 2OWVA 2ZVBA 2E8RA 2DSGA 2P6KA 2EGBA 2EGSA 2EL1A 2EMUA 2EJJA 2DEKA 2YBOA 2HR8A 1V9AA 1PJSA 1CBFA 2P9DA 2ENIA 1VE2A 2E15A 2E17A 2P5CA 5HW4A 2YBQA 2DXWA 3FFYA 1VA0A 3HH1A 2E07A 2EK3A 2OWGA 2EJZA 2PB4A 2DV5A 3NDCA 2HUVA 2EN5A 3I4TA 2PCAA 3NEIA 2OWKA 3KWPA 2ED3A 2EJKA 2DXVA 2PCKA 1VCEA 2EHLA 2E8QA 2BB3A 2E7RA 2HUXA 2EH4A 2E8HA 2DXXA 2E0KA 2EK7A 2DV7A 2OWUA 2EMRA 2ELEA 2E0NA 1S4DA 2ED5A 2HUQA 2DSIA 3NUTA 2E16A 2EHCA 2DV3A 2P6IA 2EKAA 1WYZA 2EH5A 2EL3A 2E4NA 2E08A 1WDEA 4E16A 1PJQA 3ND1A 2HUTA 2ZVCA 2OWFA 2PB5A 2DSHA 2PB6A 2EK4A 2QBUA 2EL2A 2P2XA 2CBFA 1WNGA 2P6LA 2PCHA 2P5FA 2E4RA
chains in the Genus database with same CATH superfamily
1PJTA 2NPNA 3URKA 1VHVA 2KYYA 2EL0A 3UV7A 2ELDA 2PCIA 2PCMA 2DV4A 4H4DA 2EEQA 2Z6RA 2EK2A 2P6DA 3FQ6A 2E8SA 2EGLA 2EH2A 2PCGA 2OWVA 2ZVBA 3UTCA 2E8RA 4N7BA 2DSGA 2P6KA 2EGBA 2EGSA 2EL1A 2EMUA 3KE9A 2EJJA 2DEKA 4H4EA 3UTDA 2YBOA 2HR8A 1V9AA 3F7TA 1PJSA 1CBFA 3UV3A 2P9DA 2ENIA 1VE2A 2E15A 2E17A 2P5CA 5HW4A 2YBQA 4H4CA 2DXWA 3FFYA 3KEFA 1VA0A 3HH1A 2E07A 4EB3A 2EK3A 2OWGA 2EJZA 2PB4A 2DV5A 3NDCA 2HUVA 2EN5A 3I4TA 2PCAA 3DNFA 3NEIA 2OWKA 3SZLA 3KWPA 2ED3A 2EJKA 2DXVA 2PCKA 1VCEA 4MV0A 2EHLA 2E8QA 3UV6A 2BB3A 2E7RA 2HUXA 2EH4A 2E8HA 2DXXA 3T0GA 2E0KA 3ZGNA 2EK7A 2DV7A 2OWUA 3ZGLA 2EMRA 2ELEA 4MUXA 2E0NA 1S4DA 2ED5A 2HUQA 2DSIA 3NUTA 2E16A 2EHCA 3KE8A 2DV3A 2P6IA 2EKAA 1WYZA 2EH5A 4MUYA 2EL3A 2E4NA 2E08A 1WDEA 4E16A 1PJQA 3ND1A 2HUTA 2ZVCA 2OWFA 2PB5A 2DSHA 2PB6A 3KELA 3T0FA 2EK4A 2QBUA 2EL2A 3TIXB 3SZUA 2P2XA 4MV5A 2CBFA 1WNGA 2P6LA 3LMMA 2PCHA 3KEMA 2P5FA 3SZOA 2E4RA 3UWMA
chains in the Genus database with same CATH topology
1PJTA 2NPNA 3URKA 1VHVA 2KYYA 2EL0A 3UV7A 2ELDA 2PCIA 2PCMA 2DV4A 4H4DA 2EEQA 2Z6RA 2EK2A 2P6DA 3FQ6A 2E8SA 2EGLA 2EH2A 2PCGA 2OWVA 2ZVBA 3UTCA 2E8RA 4N7BA 2DSGA 2P6KA 2EGBA 2EGSA 2EL1A 2EMUA 3KE9A 2EJJA 2DEKA 4H4EA 3UTDA 2YBOA 2HR8A 1V9AA 3F7TA 1PJSA 1CBFA 3UV3A 2P9DA 2ENIA 1VE2A 2E15A 2E17A 2P5CA 5HW4A 2YBQA 4H4CA 2DXWA 3FFYA 3KEFA 1VA0A 3HH1A 2E07A 4EB3A 2EK3A 2OWGA 2EJZA 2PB4A 2DV5A 3NDCA 2HUVA 2EN5A 3I4TA 2PCAA 3DNFA 3NEIA 2OWKA 3SZLA 3KWPA 2ED3A 2EJKA 2DXVA 2PCKA 1VCEA 4MV0A 2EHLA 2E8QA 3UV6A 2BB3A 2E7RA 2HUXA 2EH4A 2E8HA 2DXXA 3T0GA 2E0KA 3ZGNA 2EK7A 2DV7A 2OWUA 3ZGLA 2EMRA 2ELEA 4MUXA 2E0NA 1S4DA 2ED5A 2HUQA 2DSIA 3NUTA 2E16A 2EHCA 3KE8A 2DV3A 2P6IA 2EKAA 1WYZA 2EH5A 4MUYA 2EL3A 2E4NA 2E08A 1WDEA 4E16A 1PJQA 3ND1A 2HUTA 2ZVCA 2OWFA 2PB5A 2DSHA 2PB6A 3KELA 3T0FA 2EK4A 2QBUA 2EL2A 3TIXB 3SZUA 2P2XA 4MV5A 2CBFA 1WNGA 2P6LA 3LMMA 2PCHA 3KEMA 2P5FA 3SZOA 2E4RA 3UWMA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1PJT A;  2NPN A;  1VHV A;  2EL0 A;  2ELD A;  2PCI A;  2PCM A;  2DV4 A;  2EEQ A;  2Z6R A;  2EK2 A;  2P6D A;  3FQ6 A;  2E8S A;  2EGL A;  2EH2 A;  2PCG A;  2OWV A;  2ZVB A;  2E8R A;  2DSG A;  2P6K A;  2EGB A;  2EGS A;  2EL1 A;  2EMU A;  2EJJ A;  2DEK A;  2YBO A;  2HR8 A;  1V9A A;  1PJS A;  1CBF A;  2P9D A;  2ENI A;  1VE2 A;  2E15 A;  2E17 A;  2P5C A;  5HW4 A;  2YBQ A;  2DXW A;  3FFY A;  1VA0 A;  3HH1 A;  2E07 A;  2EK3 A;  2OWG A;  2EJZ A;  2PB4 A;  2DV5 A;  3NDC A;  2HUV A;  2EN5 A;  3I4T A;  2PCA A;  3NEI A;  2OWK A;  3KWP A;  2ED3 A;  2EJK A;  2DXV A;  2PCK A;  1VCE A;  2EHL A;  2E8Q A;  2BB3 A;  2E7R A;  2HUX A;  2EH4 A;  2E8H A;  2DXX A;  2E0K A;  2EK7 A;  2DV7 A;  2OWU A;  2EMR A;  2ELE A;  2E0N A;  1S4D A;  2ED5 A;  2HUQ A;  2DSI A;  3NUT A;  2E16 A;  2EHC A;  2DV3 A;  2P6I A;  2EKA A;  1WYZ A;  2EH5 A;  2EL3 A;  2E4N A;  2E08 A;  1WDE A;  4E16 A;  1PJQ A;  3ND1 A;  2HUT A;  2ZVC A;  2OWF A;  2PB5 A;  2DSH A;  2PB6 A;  2EK4 A;  2QBU A;  2EL2 A;  2P2X A;  2CBF A;  1WNG A;  2P6L A;  2PCH A;  2P5F A;  2E4R A; 
#chains in the Genus database with same CATH topology
 1PJT A;  2NPN A;  3URK A;  1VHV A;  2KYY A;  2EL0 A;  3UV7 A;  2ELD A;  2PCI A;  2PCM A;  2DV4 A;  4H4D A;  2EEQ A;  2Z6R A;  2EK2 A;  2P6D A;  3FQ6 A;  2E8S A;  2EGL A;  2EH2 A;  2PCG A;  2OWV A;  2ZVB A;  3UTC A;  2E8R A;  4N7B A;  2DSG A;  2P6K A;  2EGB A;  2EGS A;  2EL1 A;  2EMU A;  3KE9 A;  2EJJ A;  2DEK A;  4H4E A;  3UTD A;  2YBO A;  2HR8 A;  1V9A A;  3F7T A;  1PJS A;  1CBF A;  3UV3 A;  2P9D A;  2ENI A;  1VE2 A;  2E15 A;  2E17 A;  2P5C A;  5HW4 A;  2YBQ A;  4H4C A;  2DXW A;  3FFY A;  3KEF A;  1VA0 A;  3HH1 A;  2E07 A;  4EB3 A;  2EK3 A;  2OWG A;  2EJZ A;  2PB4 A;  2DV5 A;  3NDC A;  2HUV A;  2EN5 A;  3I4T A;  2PCA A;  3DNF A;  3NEI A;  2OWK A;  3SZL A;  3KWP A;  2ED3 A;  2EJK A;  2DXV A;  2PCK A;  1VCE A;  4MV0 A;  2EHL A;  2E8Q A;  3UV6 A;  2BB3 A;  2E7R A;  2HUX A;  2EH4 A;  2E8H A;  2DXX A;  3T0G A;  2E0K A;  3ZGN A;  2EK7 A;  2DV7 A;  2OWU A;  3ZGL A;  2EMR A;  2ELE A;  4MUX A;  2E0N A;  1S4D A;  2ED5 A;  2HUQ A;  2DSI A;  3NUT A;  2E16 A;  2EHC A;  3KE8 A;  2DV3 A;  2P6I A;  2EKA A;  1WYZ A;  2EH5 A;  4MUY A;  2EL3 A;  2E4N A;  2E08 A;  1WDE A;  4E16 A;  1PJQ A;  3ND1 A;  2HUT A;  2ZVC A;  2OWF A;  2PB5 A;  2DSH A;  2PB6 A;  3KEL A;  3T0F A;  2EK4 A;  2QBU A;  2EL2 A;  3TIX B;  3SZU A;  2P2X A;  4MV5 A;  2CBF A;  1WNG A;  2P6L A;  3LMM A;  2PCH A;  3KEM A;  2P5F A;  3SZO A;  2E4R A;  3UWM A; 
#chains in the Genus database with same CATH homology
 1PJT A;  2NPN A;  3URK A;  1VHV A;  2KYY A;  2EL0 A;  3UV7 A;  2ELD A;  2PCI A;  2PCM A;  2DV4 A;  4H4D A;  2EEQ A;  2Z6R A;  2EK2 A;  2P6D A;  3FQ6 A;  2E8S A;  2EGL A;  2EH2 A;  2PCG A;  2OWV A;  2ZVB A;  3UTC A;  2E8R A;  4N7B A;  2DSG A;  2P6K A;  2EGB A;  2EGS A;  2EL1 A;  2EMU A;  3KE9 A;  2EJJ A;  2DEK A;  4H4E A;  3UTD A;  2YBO A;  2HR8 A;  1V9A A;  3F7T A;  1PJS A;  1CBF A;  3UV3 A;  2P9D A;  2ENI A;  1VE2 A;  2E15 A;  2E17 A;  2P5C A;  5HW4 A;  2YBQ A;  4H4C A;  2DXW A;  3FFY A;  3KEF A;  1VA0 A;  3HH1 A;  2E07 A;  4EB3 A;  2EK3 A;  2OWG A;  2EJZ A;  2PB4 A;  2DV5 A;  3NDC A;  2HUV A;  2EN5 A;  3I4T A;  2PCA A;  3DNF A;  3NEI A;  2OWK A;  3SZL A;  3KWP A;  2ED3 A;  2EJK A;  2DXV A;  2PCK A;  1VCE A;  4MV0 A;  2EHL A;  2E8Q A;  3UV6 A;  2BB3 A;  2E7R A;  2HUX A;  2EH4 A;  2E8H A;  2DXX A;  3T0G A;  2E0K A;  3ZGN A;  2EK7 A;  2DV7 A;  2OWU A;  3ZGL A;  2EMR A;  2ELE A;  4MUX A;  2E0N A;  1S4D A;  2ED5 A;  2HUQ A;  2DSI A;  3NUT A;  2E16 A;  2EHC A;  3KE8 A;  2DV3 A;  2P6I A;  2EKA A;  1WYZ A;  2EH5 A;  4MUY A;  2EL3 A;  2E4N A;  2E08 A;  1WDE A;  4E16 A;  1PJQ A;  3ND1 A;  2HUT A;  2ZVC A;  2OWF A;  2PB5 A;  2DSH A;  2PB6 A;  3KEL A;  3T0F A;  2EK4 A;  2QBU A;  2EL2 A;  3TIX B;  3SZU A;  2P2X A;  4MV5 A;  2CBF A;  1WNG A;  2P6L A;  3LMM A;  2PCH A;  3KEM A;  2P5F A;  3SZO A;  2E4R A;  3UWM A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...