2P6KA

Crystal structure of ph0725 from pyrococcus horikoshii ot3
Total Genus 82
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
82
sequence length
265
structure length
265
Chain Sequence
MVLYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQKLIGKEIRVLSREDVELNFENIVLPLAKENDVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSIYSAVGITGLHIYKFGKSATVMYPEGNWFPTSYYDVIKENAERGLHTLLFLDIKAEKRMYMTANEAMELLLKVEDMKKGGVFTDDTLVVVLARAGSLNPTIRAGYVKDLIREDFGDPPHILIVPGKLHIVEAEYLVEIAGAPREILRVNV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of PH0725 from Pyrococcus horikoshii OT3
rcsb
source organism Pyrococcus horikoshii
molecule tags Transferase
molecule keywords diphthine synthase
total genus 82
structure length 265
sequence length 265
chains with identical sequence B
ec nomenclature ec 2.1.1.98: Diphthine synthase.
pdb deposition date 2007-03-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00590 TP_methylase Tetrapyrrole (Corrin/Porphyrin) Methylases
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.950.10 Alpha Beta 2-Layer Sandwich Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 2p6kA02
3.40.1010.10 Alpha Beta 3-Layer(aba) Sandwich Cobalt-precorrin-4 Transmethylase; domain 1 Cobalt-precorrin-4 Transmethylase; Domain 1 2p6kA01
3KWPA 2EEQA 2DSIA 2EHLA 2E8QA 2EL1A 2HUXA 2DXXA 1VCEA 2EGBA 2PB6A 2E07A 1VE2A 2E0KA 2OWVA 1S4DA 2EL3A 1PJTA 2EGSA 2E8SA 1WDEA 2DXWA 3FFYA 2ED3A 2EMUA 1V9AA 2EK2A 2HUTA 2P6DA 4E16A 2DSHA 2P9DA 2CBFA 2E16A 2DSGA 2EL2A 5HW4A 2P2XA 1WNGA 2ZVCA 2E8HA 2ENIA 2PB5A 2QBUA 2P6LA 2E7RA 2PCHA 2PCGA 2PB4A 2DV5A 2HUVA 2EL0A 1WYZA 2ZVBA 2E8RA 2EK3A 2EJZA 2EK4A 2EJKA 2E4NA 2YBOA 2OWGA 2EK7A 2PCIA 2YBQA 1CBFA 2E4RA 2EJJA 2DV4A 2BB3A 2OWUA 2HUQA 1PJSA 2EKAA 2DV7A 2PCKA 2EGLA 3FQ6A 2E08A 2Z6RA 2OWKA 2EN5A 3I4TA 3ND1A 2ELEA 1VHVA 2P5CA 2ELDA 2EH4A 2E15A 2EH5A 2P6IA 2EHCA 2EH2A 2PCAA 2HR8A 2DV3A 2OWFA 2EMRA 2P6KA 2ED5A 2P5FA 3HH1A 2E0NA 2E17A 2NPNA 3NDCA 2DXVA 2PCMA 1PJQA 1VA0A 3NUTA 3NEIA 2DEKA
chains in the Genus database with same CATH superfamily
3KWPA 3T0GA 2EEQA 2DSIA 2EHLA 3UV7A 2E8QA 2EL1A 2HUXA 2DXXA 1VCEA 2EGBA 2PB6A 4MUXA 2E07A 1VE2A 2E0KA 2OWVA 1S4DA 2EL3A 3LMMA 3ZGNA 1PJTA 2EGSA 3SZLA 3SZUA 2E8SA 3URKA 1WDEA 2DXWA 3FFYA 3KE9A 2ED3A 3KEFA 2EMUA 1V9AA 2EK2A 2HUTA 2P6DA 4E16A 2DSHA 3UTCA 3UWMA 2P9DA 2CBFA 2E16A 2DSGA 3KEMA 2EL2A 5HW4A 2P2XA 4MUYA 1WNGA 2ZVCA 2E8HA 2ENIA 2PB5A 4MV0A 2QBUA 2P6LA 2E7RA 2PCHA 2PCGA 2PB4A 3TIXB 2DV5A 2HUVA 2EL0A 4H4CA 1WYZA 2ZVBA 4N7BA 3UV3A 3F7TA 2E8RA 2EK3A 2EJZA 2EK4A 2EJKA 2E4NA 2YBOA 2OWGA 2EK7A 2PCIA 2YBQA 1CBFA 2E4RA 2EJJA 3KELA 2DV4A 2BB3A 2OWUA 2HUQA 1PJSA 2EKAA 2DV7A 2PCKA 2EGLA 3FQ6A 3DNFA 2E08A 2Z6RA 2OWKA 2EN5A 3I4TA 3SZOA 3ND1A 2ELEA 1VHVA 2P5CA 3KE8A 4EB3A 2ELDA 2EH4A 2E15A 2EH5A 2P6IA 2EHCA 3ZGLA 3UTDA 2EH2A 2PCAA 2HR8A 3UV6A 2DV3A 2OWFA 4H4EA 2EMRA 2P6KA 3T0FA 2ED5A 2P5FA 3HH1A 2E0NA 2E17A 4H4DA 2NPNA 3NDCA 2DXVA 2PCMA 1PJQA 1VA0A 4MV5A 3NUTA 3NEIA 2KYYA 2DEKA
chains in the Genus database with same CATH topology
3KWPA 3T0GA 2EEQA 2DSIA 2EHLA 3UV7A 2E8QA 2EL1A 2HUXA 2DXXA 1VCEA 2EGBA 2PB6A 4MUXA 2E07A 1VE2A 2E0KA 2OWVA 1S4DA 2EL3A 3LMMA 3ZGNA 1PJTA 2EGSA 3SZLA 3SZUA 2E8SA 3URKA 1WDEA 2DXWA 3FFYA 3KE9A 2ED3A 3KEFA 2EMUA 1V9AA 2EK2A 2HUTA 2P6DA 4E16A 2DSHA 3UTCA 3UWMA 2P9DA 2CBFA 2E16A 2DSGA 3KEMA 2EL2A 5HW4A 2P2XA 4MUYA 1WNGA 2ZVCA 2E8HA 2ENIA 2PB5A 4MV0A 2QBUA 2P6LA 2E7RA 2PCHA 2PCGA 2PB4A 3TIXB 2DV5A 2HUVA 2EL0A 4H4CA 1WYZA 2ZVBA 4N7BA 3UV3A 3F7TA 2E8RA 2EK3A 2EJZA 2EK4A 2EJKA 2E4NA 2YBOA 2OWGA 2EK7A 2PCIA 2YBQA 1CBFA 2E4RA 2EJJA 3KELA 2DV4A 2BB3A 2OWUA 2HUQA 1PJSA 2EKAA 2DV7A 2PCKA 2EGLA 3FQ6A 3DNFA 2E08A 2Z6RA 2OWKA 2EN5A 3I4TA 3SZOA 3ND1A 2ELEA 1VHVA 2P5CA 3KE8A 4EB3A 2ELDA 2EH4A 2E15A 2EH5A 2P6IA 2EHCA 3ZGLA 3UTDA 2EH2A 2PCAA 2HR8A 3UV6A 2DV3A 2OWFA 4H4EA 2EMRA 2P6KA 3T0FA 2ED5A 2P5FA 3HH1A 2E0NA 2E17A 4H4DA 2NPNA 3NDCA 2DXVA 2PCMA 1PJQA 1VA0A 4MV5A 3NUTA 3NEIA 2KYYA 2DEKA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3KWP A;  2EEQ A;  2DSI A;  2EHL A;  2E8Q A;  2EL1 A;  2HUX A;  2DXX A;  1VCE A;  2EGB A;  2PB6 A;  2E07 A;  1VE2 A;  2E0K A;  2OWV A;  1S4D A;  2EL3 A;  1PJT A;  2EGS A;  2E8S A;  1WDE A;  2DXW A;  3FFY A;  2ED3 A;  2EMU A;  1V9A A;  2EK2 A;  2HUT A;  2P6D A;  4E16 A;  2DSH A;  2P9D A;  2CBF A;  2E16 A;  2DSG A;  2EL2 A;  5HW4 A;  2P2X A;  1WNG A;  2ZVC A;  2E8H A;  2ENI A;  2PB5 A;  2QBU A;  2P6L A;  2E7R A;  2PCH A;  2PCG A;  2PB4 A;  2DV5 A;  2HUV A;  2EL0 A;  1WYZ A;  2ZVB A;  2E8R A;  2EK3 A;  2EJZ A;  2EK4 A;  2EJK A;  2E4N A;  2YBO A;  2OWG A;  2EK7 A;  2PCI A;  2YBQ A;  1CBF A;  2E4R A;  2EJJ A;  2DV4 A;  2BB3 A;  2OWU A;  2HUQ A;  1PJS A;  2EKA A;  2DV7 A;  2PCK A;  2EGL A;  3FQ6 A;  2E08 A;  2Z6R A;  2OWK A;  2EN5 A;  3I4T A;  3ND1 A;  2ELE A;  1VHV A;  2P5C A;  2ELD A;  2EH4 A;  2E15 A;  2EH5 A;  2P6I A;  2EHC A;  2EH2 A;  2PCA A;  2HR8 A;  2DV3 A;  2OWF A;  2EMR A;  2P6K A;  2ED5 A;  2P5F A;  3HH1 A;  2E0N A;  2E17 A;  2NPN A;  3NDC A;  2DXV A;  2PCM A;  1PJQ A;  1VA0 A;  3NUT A;  3NEI A;  2DEK A; 
#chains in the Genus database with same CATH topology
 3KWP A;  3T0G A;  2EEQ A;  2DSI A;  2EHL A;  3UV7 A;  2E8Q A;  2EL1 A;  2HUX A;  2DXX A;  1VCE A;  2EGB A;  2PB6 A;  4MUX A;  2E07 A;  1VE2 A;  2E0K A;  2OWV A;  1S4D A;  2EL3 A;  3LMM A;  3ZGN A;  1PJT A;  2EGS A;  3SZL A;  3SZU A;  2E8S A;  3URK A;  1WDE A;  2DXW A;  3FFY A;  3KE9 A;  2ED3 A;  3KEF A;  2EMU A;  1V9A A;  2EK2 A;  2HUT A;  2P6D A;  4E16 A;  2DSH A;  3UTC A;  3UWM A;  2P9D A;  2CBF A;  2E16 A;  2DSG A;  3KEM A;  2EL2 A;  5HW4 A;  2P2X A;  4MUY A;  1WNG A;  2ZVC A;  2E8H A;  2ENI A;  2PB5 A;  4MV0 A;  2QBU A;  2P6L A;  2E7R A;  2PCH A;  2PCG A;  2PB4 A;  3TIX B;  2DV5 A;  2HUV A;  2EL0 A;  4H4C A;  1WYZ A;  2ZVB A;  4N7B A;  3UV3 A;  3F7T A;  2E8R A;  2EK3 A;  2EJZ A;  2EK4 A;  2EJK A;  2E4N A;  2YBO A;  2OWG A;  2EK7 A;  2PCI A;  2YBQ A;  1CBF A;  2E4R A;  2EJJ A;  3KEL A;  2DV4 A;  2BB3 A;  2OWU A;  2HUQ A;  1PJS A;  2EKA A;  2DV7 A;  2PCK A;  2EGL A;  3FQ6 A;  3DNF A;  2E08 A;  2Z6R A;  2OWK A;  2EN5 A;  3I4T A;  3SZO A;  3ND1 A;  2ELE A;  1VHV A;  2P5C A;  3KE8 A;  4EB3 A;  2ELD A;  2EH4 A;  2E15 A;  2EH5 A;  2P6I A;  2EHC A;  3ZGL A;  3UTD A;  2EH2 A;  2PCA A;  2HR8 A;  3UV6 A;  2DV3 A;  2OWF A;  4H4E A;  2EMR A;  2P6K A;  3T0F A;  2ED5 A;  2P5F A;  3HH1 A;  2E0N A;  2E17 A;  4H4D A;  2NPN A;  3NDC A;  2DXV A;  2PCM A;  1PJQ A;  1VA0 A;  4MV5 A;  3NUT A;  3NEI A;  2KYY A;  2DEK A; 
#chains in the Genus database with same CATH homology
 3KWP A;  3T0G A;  2EEQ A;  2DSI A;  2EHL A;  3UV7 A;  2E8Q A;  2EL1 A;  2HUX A;  2DXX A;  1VCE A;  2EGB A;  2PB6 A;  4MUX A;  2E07 A;  1VE2 A;  2E0K A;  2OWV A;  1S4D A;  2EL3 A;  3LMM A;  3ZGN A;  1PJT A;  2EGS A;  3SZL A;  3SZU A;  2E8S A;  3URK A;  1WDE A;  2DXW A;  3FFY A;  3KE9 A;  2ED3 A;  3KEF A;  2EMU A;  1V9A A;  2EK2 A;  2HUT A;  2P6D A;  4E16 A;  2DSH A;  3UTC A;  3UWM A;  2P9D A;  2CBF A;  2E16 A;  2DSG A;  3KEM A;  2EL2 A;  5HW4 A;  2P2X A;  4MUY A;  1WNG A;  2ZVC A;  2E8H A;  2ENI A;  2PB5 A;  4MV0 A;  2QBU A;  2P6L A;  2E7R A;  2PCH A;  2PCG A;  2PB4 A;  3TIX B;  2DV5 A;  2HUV A;  2EL0 A;  4H4C A;  1WYZ A;  2ZVB A;  4N7B A;  3UV3 A;  3F7T A;  2E8R A;  2EK3 A;  2EJZ A;  2EK4 A;  2EJK A;  2E4N A;  2YBO A;  2OWG A;  2EK7 A;  2PCI A;  2YBQ A;  1CBF A;  2E4R A;  2EJJ A;  3KEL A;  2DV4 A;  2BB3 A;  2OWU A;  2HUQ A;  1PJS A;  2EKA A;  2DV7 A;  2PCK A;  2EGL A;  3FQ6 A;  3DNF A;  2E08 A;  2Z6R A;  2OWK A;  2EN5 A;  3I4T A;  3SZO A;  3ND1 A;  2ELE A;  1VHV A;  2P5C A;  3KE8 A;  4EB3 A;  2ELD A;  2EH4 A;  2E15 A;  2EH5 A;  2P6I A;  2EHC A;  3ZGL A;  3UTD A;  2EH2 A;  2PCA A;  2HR8 A;  3UV6 A;  2DV3 A;  2OWF A;  4H4E A;  2EMR A;  2P6K A;  3T0F A;  2ED5 A;  2P5F A;  3HH1 A;  2E0N A;  2E17 A;  4H4D A;  2NPN A;  3NDC A;  2DXV A;  2PCM A;  1PJQ A;  1VA0 A;  4MV5 A;  3NUT A;  3NEI A;  2KYY A;  2DEK A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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