2P6KA

Crystal structure of ph0725 from pyrococcus horikoshii ot3
Total Genus 82
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
82
sequence length
265
structure length
265
Chain Sequence
MVLYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQKLIGKEIRVLSREDVELNFENIVLPLAKENDVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSIYSAVGITGLHIYKFGKSATVMYPEGNWFPTSYYDVIKENAERGLHTLLFLDIKAEKRMYMTANEAMELLLKVEDMKKGGVFTDDTLVVVLARAGSLNPTIRAGYVKDLIREDFGDPPHILIVPGKLHIVEAEYLVEIAGAPREILRVNV
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Transferase
molecule keywords diphthine synthase
publication title Crystal structure of PH0725 from Pyrococcus horikoshii OT3
rcsb
source organism Pyrococcus horikoshii
total genus 82
structure length 265
sequence length 265
chains with identical sequence B
ec nomenclature ec 2.1.1.98: Diphthine synthase.
pdb deposition date 2007-03-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00590 TP_methylase Tetrapyrrole (Corrin/Porphyrin) Methylases
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.950.10 Alpha Beta 2-Layer Sandwich Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 2p6kA02
3.40.1010.10 Alpha Beta 3-Layer(aba) Sandwich Cobalt-precorrin-4 Transmethylase; domain 1 Cobalt-precorrin-4 Transmethylase; Domain 1 2p6kA01
2ED3A 2EL1A 2E4RA 2HUQA 2EL2A 2EN5A 2HR8A 2EMRA 2EKAA 2DV7A 2EMUA 3I4TA 1WNGA 2DXXA 2E15A 2ELEA 2EGBA 2EH2A 2E0NA 2EH5A 2EJZA 2E08A 2E8QA 1PJSA 2ELDA 2E7RA 2ENIA 5HW4A 2CBFA 2PB5A 1S4DA 2ZVBA 2PCHA 2ZVCA 2DXWA 2EEQA 2PCIA 2E16A 2EK3A 2E0KA 2E8HA 2EK2A 2P6DA 2YBQA 3NUTA 2P6LA 3FFYA 1VA0A 2P5CA 2E8RA 2E17A 2E4NA 2OWUA 2DV4A 2OWKA 1PJQA 2OWVA 2DXVA 2P5FA 2DEKA 3HH1A 2DV3A 2BB3A 3NEIA 2EJKA 2DSHA 2P9DA 3KWPA 2DV5A 2NPNA 1VHVA 2P6KA 2HUVA 1WDEA 3FQ6A 1CBFA 1PJTA 2PCGA 2EK7A 2EH4A 1VCEA 2OWGA 2YBOA 2EL0A 2HUTA 2P6IA 4E16A 3ND1A 3NDCA 2EL3A 1VE2A 2DSIA 2PCKA 2E8SA 2PCMA 1V9AA 2EK4A 1WYZA 2ED5A 2EHCA 2E07A 2EGSA 2PB6A 2EGLA 2Z6RA 2OWFA 2DSGA 2QBUA 2EJJA 2HUXA 2P2XA 2PCAA 2PB4A 2EHLA
chains in the Genus database with same CATH superfamily
3T0GA 2ED3A 3UWMA 2EL1A 2E4RA 2HUQA 2EL2A 2EN5A 2HR8A 3KE9A 2EMRA 3KEFA 3LMMA 2EKAA 2DV7A 2EMUA 3I4TA 1WNGA 4MV5A 2DXXA 2E15A 2ELEA 3UTDA 3UV6A 3URKA 2EGBA 2EH2A 2E0NA 2EH5A 2EJZA 3SZUA 2E08A 2E8QA 1PJSA 3ZGNA 2ELDA 2E7RA 2ENIA 5HW4A 2CBFA 2PB5A 1S4DA 2ZVBA 2PCHA 2ZVCA 4EB3A 2DXWA 2EEQA 3T0FA 2PCIA 2E16A 2EK3A 4MUYA 3UV3A 3UV7A 2E0KA 2E8HA 2EK2A 2P6DA 2YBQA 3NUTA 2P6LA 3FFYA 1VA0A 3UTCA 2P5CA 2E8RA 2E17A 2E4NA 2OWUA 3ZGLA 2DV4A 2OWKA 3KEMA 1PJQA 3KELA 2OWVA 2DXVA 2P5FA 2DEKA 3HH1A 2DV3A 2BB3A 3NEIA 2EJKA 2DSHA 2P9DA 3KWPA 2DV5A 4N7BA 2NPNA 1VHVA 2P6KA 2HUVA 1WDEA 3FQ6A 1CBFA 1PJTA 2PCGA 2EK7A 2EH4A 3TIXB 1VCEA 2OWGA 2YBOA 2EL0A 2HUTA 2P6IA 4E16A 3ND1A 3SZOA 4MV0A 4H4DA 3NDCA 2EL3A 1VE2A 4H4CA 2DSIA 2PCKA 2E8SA 2PCMA 1V9AA 2EK4A 1WYZA 2ED5A 2EHCA 3F7TA 2E07A 2EGSA 4H4EA 2PB6A 2EGLA 2Z6RA 3KE8A 2OWFA 2DSGA 2QBUA 3DNFA 2EJJA 4MUXA 2HUXA 3SZLA 2P2XA 2PCAA 2KYYA 2PB4A 2EHLA
chains in the Genus database with same CATH topology
3T0GA 2ED3A 3UWMA 2EL1A 2E4RA 2HUQA 2EL2A 2EN5A 2HR8A 3KE9A 2EMRA 3KEFA 3LMMA 2EKAA 2DV7A 2EMUA 3I4TA 1WNGA 4MV5A 2DXXA 2E15A 2ELEA 3UTDA 3UV6A 3URKA 2EGBA 2EH2A 2E0NA 2EH5A 2EJZA 3SZUA 2E08A 2E8QA 1PJSA 3ZGNA 2ELDA 2E7RA 2ENIA 5HW4A 2CBFA 2PB5A 1S4DA 2ZVBA 2PCHA 2ZVCA 4EB3A 2DXWA 2EEQA 3T0FA 2PCIA 2E16A 2EK3A 4MUYA 3UV3A 3UV7A 2E0KA 2E8HA 2EK2A 2P6DA 2YBQA 3NUTA 2P6LA 3FFYA 1VA0A 3UTCA 2P5CA 2E8RA 2E17A 2E4NA 2OWUA 3ZGLA 2DV4A 2OWKA 3KEMA 1PJQA 3KELA 2OWVA 2DXVA 2P5FA 2DEKA 3HH1A 2DV3A 2BB3A 3NEIA 2EJKA 2DSHA 2P9DA 3KWPA 2DV5A 4N7BA 2NPNA 1VHVA 2P6KA 2HUVA 1WDEA 3FQ6A 1CBFA 1PJTA 2PCGA 2EK7A 2EH4A 3TIXB 1VCEA 2OWGA 2YBOA 2EL0A 2HUTA 2P6IA 4E16A 3ND1A 3SZOA 4MV0A 4H4DA 3NDCA 2EL3A 1VE2A 4H4CA 2DSIA 2PCKA 2E8SA 2PCMA 1V9AA 2EK4A 1WYZA 2ED5A 2EHCA 3F7TA 2E07A 2EGSA 4H4EA 2PB6A 2EGLA 2Z6RA 3KE8A 2OWFA 2DSGA 2QBUA 3DNFA 2EJJA 4MUXA 2HUXA 3SZLA 2P2XA 2PCAA 2KYYA 2PB4A 2EHLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2ED3 A;  2EL1 A;  2E4R A;  2HUQ A;  2EL2 A;  2EN5 A;  2HR8 A;  2EMR A;  2EKA A;  2DV7 A;  2EMU A;  3I4T A;  1WNG A;  2DXX A;  2E15 A;  2ELE A;  2EGB A;  2EH2 A;  2E0N A;  2EH5 A;  2EJZ A;  2E08 A;  2E8Q A;  1PJS A;  2ELD A;  2E7R A;  2ENI A;  5HW4 A;  2CBF A;  2PB5 A;  1S4D A;  2ZVB A;  2PCH A;  2ZVC A;  2DXW A;  2EEQ A;  2PCI A;  2E16 A;  2EK3 A;  2E0K A;  2E8H A;  2EK2 A;  2P6D A;  2YBQ A;  3NUT A;  2P6L A;  3FFY A;  1VA0 A;  2P5C A;  2E8R A;  2E17 A;  2E4N A;  2OWU A;  2DV4 A;  2OWK A;  1PJQ A;  2OWV A;  2DXV A;  2P5F A;  2DEK A;  3HH1 A;  2DV3 A;  2BB3 A;  3NEI A;  2EJK A;  2DSH A;  2P9D A;  3KWP A;  2DV5 A;  2NPN A;  1VHV A;  2P6K A;  2HUV A;  1WDE A;  3FQ6 A;  1CBF A;  1PJT A;  2PCG A;  2EK7 A;  2EH4 A;  1VCE A;  2OWG A;  2YBO A;  2EL0 A;  2HUT A;  2P6I A;  4E16 A;  3ND1 A;  3NDC A;  2EL3 A;  1VE2 A;  2DSI A;  2PCK A;  2E8S A;  2PCM A;  1V9A A;  2EK4 A;  1WYZ A;  2ED5 A;  2EHC A;  2E07 A;  2EGS A;  2PB6 A;  2EGL A;  2Z6R A;  2OWF A;  2DSG A;  2QBU A;  2EJJ A;  2HUX A;  2P2X A;  2PCA A;  2PB4 A;  2EHL A; 
#chains in the Genus database with same CATH topology
 3T0G A;  2ED3 A;  3UWM A;  2EL1 A;  2E4R A;  2HUQ A;  2EL2 A;  2EN5 A;  2HR8 A;  3KE9 A;  2EMR A;  3KEF A;  3LMM A;  2EKA A;  2DV7 A;  2EMU A;  3I4T A;  1WNG A;  4MV5 A;  2DXX A;  2E15 A;  2ELE A;  3UTD A;  3UV6 A;  3URK A;  2EGB A;  2EH2 A;  2E0N A;  2EH5 A;  2EJZ A;  3SZU A;  2E08 A;  2E8Q A;  1PJS A;  3ZGN A;  2ELD A;  2E7R A;  2ENI A;  5HW4 A;  2CBF A;  2PB5 A;  1S4D A;  2ZVB A;  2PCH A;  2ZVC A;  4EB3 A;  2DXW A;  2EEQ A;  3T0F A;  2PCI A;  2E16 A;  2EK3 A;  4MUY A;  3UV3 A;  3UV7 A;  2E0K A;  2E8H A;  2EK2 A;  2P6D A;  2YBQ A;  3NUT A;  2P6L A;  3FFY A;  1VA0 A;  3UTC A;  2P5C A;  2E8R A;  2E17 A;  2E4N A;  2OWU A;  3ZGL A;  2DV4 A;  2OWK A;  3KEM A;  1PJQ A;  3KEL A;  2OWV A;  2DXV A;  2P5F A;  2DEK A;  3HH1 A;  2DV3 A;  2BB3 A;  3NEI A;  2EJK A;  2DSH A;  2P9D A;  3KWP A;  2DV5 A;  4N7B A;  2NPN A;  1VHV A;  2P6K A;  2HUV A;  1WDE A;  3FQ6 A;  1CBF A;  1PJT A;  2PCG A;  2EK7 A;  2EH4 A;  3TIX B;  1VCE A;  2OWG A;  2YBO A;  2EL0 A;  2HUT A;  2P6I A;  4E16 A;  3ND1 A;  3SZO A;  4MV0 A;  4H4D A;  3NDC A;  2EL3 A;  1VE2 A;  4H4C A;  2DSI A;  2PCK A;  2E8S A;  2PCM A;  1V9A A;  2EK4 A;  1WYZ A;  2ED5 A;  2EHC A;  3F7T A;  2E07 A;  2EGS A;  4H4E A;  2PB6 A;  2EGL A;  2Z6R A;  3KE8 A;  2OWF A;  2DSG A;  2QBU A;  3DNF A;  2EJJ A;  4MUX A;  2HUX A;  3SZL A;  2P2X A;  2PCA A;  2KYY A;  2PB4 A;  2EHL A; 
#chains in the Genus database with same CATH homology
 3T0G A;  2ED3 A;  3UWM A;  2EL1 A;  2E4R A;  2HUQ A;  2EL2 A;  2EN5 A;  2HR8 A;  3KE9 A;  2EMR A;  3KEF A;  3LMM A;  2EKA A;  2DV7 A;  2EMU A;  3I4T A;  1WNG A;  4MV5 A;  2DXX A;  2E15 A;  2ELE A;  3UTD A;  3UV6 A;  3URK A;  2EGB A;  2EH2 A;  2E0N A;  2EH5 A;  2EJZ A;  3SZU A;  2E08 A;  2E8Q A;  1PJS A;  3ZGN A;  2ELD A;  2E7R A;  2ENI A;  5HW4 A;  2CBF A;  2PB5 A;  1S4D A;  2ZVB A;  2PCH A;  2ZVC A;  4EB3 A;  2DXW A;  2EEQ A;  3T0F A;  2PCI A;  2E16 A;  2EK3 A;  4MUY A;  3UV3 A;  3UV7 A;  2E0K A;  2E8H A;  2EK2 A;  2P6D A;  2YBQ A;  3NUT A;  2P6L A;  3FFY A;  1VA0 A;  3UTC A;  2P5C A;  2E8R A;  2E17 A;  2E4N A;  2OWU A;  3ZGL A;  2DV4 A;  2OWK A;  3KEM A;  1PJQ A;  3KEL A;  2OWV A;  2DXV A;  2P5F A;  2DEK A;  3HH1 A;  2DV3 A;  2BB3 A;  3NEI A;  2EJK A;  2DSH A;  2P9D A;  3KWP A;  2DV5 A;  4N7B A;  2NPN A;  1VHV A;  2P6K A;  2HUV A;  1WDE A;  3FQ6 A;  1CBF A;  1PJT A;  2PCG A;  2EK7 A;  2EH4 A;  3TIX B;  1VCE A;  2OWG A;  2YBO A;  2EL0 A;  2HUT A;  2P6I A;  4E16 A;  3ND1 A;  3SZO A;  4MV0 A;  4H4D A;  3NDC A;  2EL3 A;  1VE2 A;  4H4C A;  2DSI A;  2PCK A;  2E8S A;  2PCM A;  1V9A A;  2EK4 A;  1WYZ A;  2ED5 A;  2EHC A;  3F7T A;  2E07 A;  2EGS A;  4H4E A;  2PB6 A;  2EGL A;  2Z6R A;  3KE8 A;  2OWF A;  2DSG A;  2QBU A;  3DNF A;  2EJJ A;  4MUX A;  2HUX A;  3SZL A;  2P2X A;  2PCA A;  2KYY A;  2PB4 A;  2EHL A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...