2P6LA

Crystal structure of ph0725 from pyrococcus horikoshii ot3
Total Genus 83
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
83
sequence length
265
structure length
265
Chain Sequence
b'MVLYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQKLIGKEIRVLSREDVELNFENIVLPLAKENDVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSIYSAVGITGLHIYKFGKSATVAYPEGNWFPTSYYDVIKENAERGLHTLLFLDIKAEKRMYMTANEAMELLLKVEDMKKGGVFTDDTLVVVLARAGSLNPTIRAGMVKDLIREDFGDPPHILIVPGKLHIVEAEYLVEIAGAPREILRVNV'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords diphthine synthase
publication title Crystal structure of PH0725 from Pyrococcus horikoshii OT3
rcsb
source organism Pyrococcus horikoshii
molecule tags Transferase
total genus 83
structure length 265
sequence length 265
chains with identical sequence B
ec nomenclature ec 2.1.1.98: Diphthine synthase.
pdb deposition date 2007-03-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00590 TP_methylase Tetrapyrrole (Corrin/Porphyrin) Methylases
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.950.10 Alpha Beta 2-Layer Sandwich Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 2p6lA02
3.40.1010.10 Alpha Beta 3-Layer(aba) Sandwich Cobalt-precorrin-4 Transmethylase; domain 1 Cobalt-precorrin-4 Transmethylase; Domain 1 2p6lA01
2EGSA 1VCEA 1WDEA 2DXXA 2PCGA 2OWUA 2P6LA 1CBFA 2EJZA 2OWFA 2E16A 2P5FA 2DV3A 2YBQA 2P5CA 2DSIA 2OWGA 1VHVA 2PCMA 2HUXA 2HR8A 2EL1A 2P6KA 3HH1A 2PCHA 1PJSA 1WNGA 2EK3A 2EN5A 3I4TA 2EHCA 2ED5A 2HUVA 2QBUA 2DV7A 2EL2A 1VE2A 3KWPA 1VA0A 2CBFA 2BB3A 2PCIA 1V9AA 2E4NA 2P6IA 1PJQA 3ND1A 2E08A 3NEIA 2NPNA 2DV5A 2PCAA 2E8RA 2ENIA 2P2XA 2E17A 3NDCA 2EL3A 1WYZA 2EEQA 2E7RA 2E15A 2EK4A 2P6DA 2PB5A 2PB6A 2ED3A 2HUTA 2E8SA 2EHLA 5HW4A 2E8HA 2EK7A 2EL0A 2YBOA 2OWVA 2PCKA 2ELEA 2E4RA 2DV4A 2DEKA 2DXVA 2DXWA 2EGBA 2E8QA 2DSHA 2EH4A 2OWKA 2EJJA 2Z6RA 2EGLA 2E0KA 2EH2A 3FQ6A 2ZVBA 2P9DA 2EMUA 2E0NA 4E16A 2EH5A 2EK2A 3NUTA 2EMRA 2DSGA 2PB4A 1S4DA 2EKAA 2EJKA 3FFYA 2E07A 2HUQA 1PJTA 2ZVCA 2ELDA
chains in the Genus database with same CATH superfamily
2EGSA 1VCEA 1WDEA 2DXXA 3KEFA 2PCGA 2OWUA 2P6LA 1CBFA 2EJZA 2OWFA 2E16A 4H4EA 3T0GA 2P5FA 3UV7A 2DV3A 2YBQA 2P5CA 3UTCA 2DSIA 4N7BA 4EB3A 2OWGA 3ZGLA 1VHVA 3SZUA 2PCMA 2HUXA 2HR8A 3UTDA 2EL1A 2P6KA 3KE8A 3HH1A 2PCHA 1PJSA 1WNGA 2EK3A 2EN5A 3I4TA 2EHCA 2ED5A 2HUVA 2QBUA 2DV7A 2EL2A 1VE2A 3KWPA 1VA0A 2CBFA 2BB3A 2PCIA 1V9AA 2E4NA 4MUXA 2P6IA 1PJQA 3ND1A 2E08A 3SZOA 3NEIA 2NPNA 2DV5A 2PCAA 2E8RA 2ENIA 2P2XA 3F7TA 4H4CA 3KE9A 2E17A 3NDCA 4MV5A 2EL3A 3KEMA 1WYZA 2EEQA 3SZLA 2E7RA 2E15A 2EK4A 3KELA 2P6DA 3URKA 2PB5A 2PB6A 2ED3A 2HUTA 2E8SA 2EHLA 4MV0A 5HW4A 2E8HA 2EK7A 2EL0A 2YBOA 2OWVA 2PCKA 2ELEA 2E4RA 2DV4A 2DEKA 3UV3A 3DNFA 2DXVA 2DXWA 2EGBA 3UWMA 2E8QA 2DSHA 2KYYA 2EH4A 2OWKA 2EJJA 2Z6RA 2EGLA 2E0KA 2EH2A 3FQ6A 2ZVBA 3TIXB 2P9DA 2EMUA 3T0FA 2E0NA 4E16A 3ZGNA 2EH5A 2EK2A 3NUTA 2EMRA 2DSGA 4MUYA 2PB4A 1S4DA 2EKAA 3UV6A 2EJKA 3LMMA 3FFYA 2E07A 2HUQA 1PJTA 2ZVCA 4H4DA 2ELDA
chains in the Genus database with same CATH topology
2EGSA 1VCEA 1WDEA 2DXXA 3KEFA 2PCGA 2OWUA 2P6LA 1CBFA 2EJZA 2OWFA 2E16A 4H4EA 3T0GA 2P5FA 3UV7A 2DV3A 2YBQA 2P5CA 3UTCA 2DSIA 4N7BA 4EB3A 2OWGA 3ZGLA 1VHVA 3SZUA 2PCMA 2HUXA 2HR8A 3UTDA 2EL1A 2P6KA 3KE8A 3HH1A 2PCHA 1PJSA 1WNGA 2EK3A 2EN5A 3I4TA 2EHCA 2ED5A 2HUVA 2QBUA 2DV7A 2EL2A 1VE2A 3KWPA 1VA0A 2CBFA 2BB3A 2PCIA 1V9AA 2E4NA 4MUXA 2P6IA 1PJQA 3ND1A 2E08A 3SZOA 3NEIA 2NPNA 2DV5A 2PCAA 2E8RA 2ENIA 2P2XA 3F7TA 4H4CA 3KE9A 2E17A 3NDCA 4MV5A 2EL3A 3KEMA 1WYZA 2EEQA 3SZLA 2E7RA 2E15A 2EK4A 3KELA 2P6DA 3URKA 2PB5A 2PB6A 2ED3A 2HUTA 2E8SA 2EHLA 4MV0A 5HW4A 2E8HA 2EK7A 2EL0A 2YBOA 2OWVA 2PCKA 2ELEA 2E4RA 2DV4A 2DEKA 3UV3A 3DNFA 2DXVA 2DXWA 2EGBA 3UWMA 2E8QA 2DSHA 2KYYA 2EH4A 2OWKA 2EJJA 2Z6RA 2EGLA 2E0KA 2EH2A 3FQ6A 2ZVBA 3TIXB 2P9DA 2EMUA 3T0FA 2E0NA 4E16A 3ZGNA 2EH5A 2EK2A 3NUTA 2EMRA 2DSGA 4MUYA 2PB4A 1S4DA 2EKAA 3UV6A 2EJKA 3LMMA 3FFYA 2E07A 2HUQA 1PJTA 2ZVCA 4H4DA 2ELDA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2EGS A;  1VCE A;  1WDE A;  2DXX A;  2PCG A;  2OWU A;  2P6L A;  1CBF A;  2EJZ A;  2OWF A;  2E16 A;  2P5F A;  2DV3 A;  2YBQ A;  2P5C A;  2DSI A;  2OWG A;  1VHV A;  2PCM A;  2HUX A;  2HR8 A;  2EL1 A;  2P6K A;  3HH1 A;  2PCH A;  1PJS A;  1WNG A;  2EK3 A;  2EN5 A;  3I4T A;  2EHC A;  2ED5 A;  2HUV A;  2QBU A;  2DV7 A;  2EL2 A;  1VE2 A;  3KWP A;  1VA0 A;  2CBF A;  2BB3 A;  2PCI A;  1V9A A;  2E4N A;  2P6I A;  1PJQ A;  3ND1 A;  2E08 A;  3NEI A;  2NPN A;  2DV5 A;  2PCA A;  2E8R A;  2ENI A;  2P2X A;  2E17 A;  3NDC A;  2EL3 A;  1WYZ A;  2EEQ A;  2E7R A;  2E15 A;  2EK4 A;  2P6D A;  2PB5 A;  2PB6 A;  2ED3 A;  2HUT A;  2E8S A;  2EHL A;  5HW4 A;  2E8H A;  2EK7 A;  2EL0 A;  2YBO A;  2OWV A;  2PCK A;  2ELE A;  2E4R A;  2DV4 A;  2DEK A;  2DXV A;  2DXW A;  2EGB A;  2E8Q A;  2DSH A;  2EH4 A;  2OWK A;  2EJJ A;  2Z6R A;  2EGL A;  2E0K A;  2EH2 A;  3FQ6 A;  2ZVB A;  2P9D A;  2EMU A;  2E0N A;  4E16 A;  2EH5 A;  2EK2 A;  3NUT A;  2EMR A;  2DSG A;  2PB4 A;  1S4D A;  2EKA A;  2EJK A;  3FFY A;  2E07 A;  2HUQ A;  1PJT A;  2ZVC A;  2ELD A; 
#chains in the Genus database with same CATH topology
 2EGS A;  1VCE A;  1WDE A;  2DXX A;  3KEF A;  2PCG A;  2OWU A;  2P6L A;  1CBF A;  2EJZ A;  2OWF A;  2E16 A;  4H4E A;  3T0G A;  2P5F A;  3UV7 A;  2DV3 A;  2YBQ A;  2P5C A;  3UTC A;  2DSI A;  4N7B A;  4EB3 A;  2OWG A;  3ZGL A;  1VHV A;  3SZU A;  2PCM A;  2HUX A;  2HR8 A;  3UTD A;  2EL1 A;  2P6K A;  3KE8 A;  3HH1 A;  2PCH A;  1PJS A;  1WNG A;  2EK3 A;  2EN5 A;  3I4T A;  2EHC A;  2ED5 A;  2HUV A;  2QBU A;  2DV7 A;  2EL2 A;  1VE2 A;  3KWP A;  1VA0 A;  2CBF A;  2BB3 A;  2PCI A;  1V9A A;  2E4N A;  4MUX A;  2P6I A;  1PJQ A;  3ND1 A;  2E08 A;  3SZO A;  3NEI A;  2NPN A;  2DV5 A;  2PCA A;  2E8R A;  2ENI A;  2P2X A;  3F7T A;  4H4C A;  3KE9 A;  2E17 A;  3NDC A;  4MV5 A;  2EL3 A;  3KEM A;  1WYZ A;  2EEQ A;  3SZL A;  2E7R A;  2E15 A;  2EK4 A;  3KEL A;  2P6D A;  3URK A;  2PB5 A;  2PB6 A;  2ED3 A;  2HUT A;  2E8S A;  2EHL A;  4MV0 A;  5HW4 A;  2E8H A;  2EK7 A;  2EL0 A;  2YBO A;  2OWV A;  2PCK A;  2ELE A;  2E4R A;  2DV4 A;  2DEK A;  3UV3 A;  3DNF A;  2DXV A;  2DXW A;  2EGB A;  3UWM A;  2E8Q A;  2DSH A;  2KYY A;  2EH4 A;  2OWK A;  2EJJ A;  2Z6R A;  2EGL A;  2E0K A;  2EH2 A;  3FQ6 A;  2ZVB A;  3TIX B;  2P9D A;  2EMU A;  3T0F A;  2E0N A;  4E16 A;  3ZGN A;  2EH5 A;  2EK2 A;  3NUT A;  2EMR A;  2DSG A;  4MUY A;  2PB4 A;  1S4D A;  2EKA A;  3UV6 A;  2EJK A;  3LMM A;  3FFY A;  2E07 A;  2HUQ A;  1PJT A;  2ZVC A;  4H4D A;  2ELD A; 
#chains in the Genus database with same CATH homology
 2EGS A;  1VCE A;  1WDE A;  2DXX A;  3KEF A;  2PCG A;  2OWU A;  2P6L A;  1CBF A;  2EJZ A;  2OWF A;  2E16 A;  4H4E A;  3T0G A;  2P5F A;  3UV7 A;  2DV3 A;  2YBQ A;  2P5C A;  3UTC A;  2DSI A;  4N7B A;  4EB3 A;  2OWG A;  3ZGL A;  1VHV A;  3SZU A;  2PCM A;  2HUX A;  2HR8 A;  3UTD A;  2EL1 A;  2P6K A;  3KE8 A;  3HH1 A;  2PCH A;  1PJS A;  1WNG A;  2EK3 A;  2EN5 A;  3I4T A;  2EHC A;  2ED5 A;  2HUV A;  2QBU A;  2DV7 A;  2EL2 A;  1VE2 A;  3KWP A;  1VA0 A;  2CBF A;  2BB3 A;  2PCI A;  1V9A A;  2E4N A;  4MUX A;  2P6I A;  1PJQ A;  3ND1 A;  2E08 A;  3SZO A;  3NEI A;  2NPN A;  2DV5 A;  2PCA A;  2E8R A;  2ENI A;  2P2X A;  3F7T A;  4H4C A;  3KE9 A;  2E17 A;  3NDC A;  4MV5 A;  2EL3 A;  3KEM A;  1WYZ A;  2EEQ A;  3SZL A;  2E7R A;  2E15 A;  2EK4 A;  3KEL A;  2P6D A;  3URK A;  2PB5 A;  2PB6 A;  2ED3 A;  2HUT A;  2E8S A;  2EHL A;  4MV0 A;  5HW4 A;  2E8H A;  2EK7 A;  2EL0 A;  2YBO A;  2OWV A;  2PCK A;  2ELE A;  2E4R A;  2DV4 A;  2DEK A;  3UV3 A;  3DNF A;  2DXV A;  2DXW A;  2EGB A;  3UWM A;  2E8Q A;  2DSH A;  2KYY A;  2EH4 A;  2OWK A;  2EJJ A;  2Z6R A;  2EGL A;  2E0K A;  2EH2 A;  3FQ6 A;  2ZVB A;  3TIX B;  2P9D A;  2EMU A;  3T0F A;  2E0N A;  4E16 A;  3ZGN A;  2EH5 A;  2EK2 A;  3NUT A;  2EMR A;  2DSG A;  4MUY A;  2PB4 A;  1S4D A;  2EKA A;  3UV6 A;  2EJK A;  3LMM A;  3FFY A;  2E07 A;  2HUQ A;  1PJT A;  2ZVC A;  4H4D A;  2ELD A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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