2P6LA

Crystal structure of ph0725 from pyrococcus horikoshii ot3
Total Genus 83
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
83
sequence length
265
structure length
265
Chain Sequence
MVLYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQKLIGKEIRVLSREDVELNFENIVLPLAKENDVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSIYSAVGITGLHIYKFGKSATVAYPEGNWFPTSYYDVIKENAERGLHTLLFLDIKAEKRMYMTANEAMELLLKVEDMKKGGVFTDDTLVVVLARAGSLNPTIRAGMVKDLIREDFGDPPHILIVPGKLHIVEAEYLVEIAGAPREILRVNV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of PH0725 from Pyrococcus horikoshii OT3
rcsb
source organism Pyrococcus horikoshii
molecule tags Transferase
molecule keywords diphthine synthase
total genus 83
structure length 265
sequence length 265
chains with identical sequence B
ec nomenclature ec 2.1.1.98: Diphthine synthase.
pdb deposition date 2007-03-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00590 TP_methylase Tetrapyrrole (Corrin/Porphyrin) Methylases
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.950.10 Alpha Beta 2-Layer Sandwich Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 2p6lA02
3.40.1010.10 Alpha Beta 3-Layer(aba) Sandwich Cobalt-precorrin-4 Transmethylase; domain 1 Cobalt-precorrin-4 Transmethylase; Domain 1 2p6lA01
1CBFA 2PCMA 2ENIA 2E17A 2HUVA 3HH1A 2EMRA 2PB6A 2P6LA 2PCAA 2EH2A 2EN5A 2EJZA 2E7RA 3NUTA 2EMUA 2DSGA 2EEQA 2YBQA 2E0KA 1PJTA 2HR8A 2E4RA 2PCIA 1PJQA 2DV4A 5HW4A 2DXXA 2DXVA 2ZVBA 3I4TA 2P2XA 2ED3A 2EJJA 2HUTA 2P6IA 2EGSA 2E0NA 2DSIA 2DXWA 2EK2A 1VHVA 2DV5A 2E07A 2E8RA 2EL3A 3NEIA 2EL1A 2EGBA 2PB4A 1V9AA 2EHCA 1PJSA 2NPNA 2P9DA 2ZVCA 4E16A 2P6DA 2EK4A 2E4NA 2DV3A 1WNGA 2EKAA 2EL2A 2ED5A 2PB5A 1VCEA 3KWPA 2E8QA 2HUXA 2OWGA 1WDEA 2P5FA 2YBOA 3NDCA 3FFYA 2OWKA 2PCGA 2EHLA 2EK3A 2BB3A 2DSHA 1WYZA 2OWUA 2EH4A 2P6KA 2DV7A 2ELEA 2PCHA 2EL0A 1VA0A 2CBFA 2DEKA 2OWFA 2Z6RA 3ND1A 2QBUA 2OWVA 1S4DA 1VE2A 2EK7A 2E15A 2EGLA 2E8HA 3FQ6A 2E08A 2E16A 2E8SA 2EJKA 2EH5A 2P5CA 2ELDA 2PCKA 2HUQA
chains in the Genus database with same CATH superfamily
1CBFA 4MV5A 2PCMA 2ENIA 2E17A 2HUVA 3HH1A 2EMRA 2PB6A 2P6LA 2PCAA 2EH2A 3SZLA 2EN5A 2EJZA 2E7RA 3NUTA 2EMUA 3KE8A 2DSGA 2EEQA 2YBQA 3KEMA 2E0KA 1PJTA 3UV7A 2HR8A 4MUYA 2E4RA 4N7BA 2PCIA 1PJQA 2DV4A 3ZGLA 5HW4A 3KEFA 2DXXA 4H4CA 3ZGNA 2DXVA 2ZVBA 3I4TA 3LMMA 3KELA 2P2XA 2ED3A 2EJJA 3KE9A 4H4EA 3T0FA 3T0GA 2HUTA 3SZUA 3UTCA 2P6IA 2EGSA 2E0NA 2DSIA 2DXWA 2EK2A 1VHVA 2DV5A 2E07A 2E8RA 2EL3A 3NEIA 2EL1A 3TIXB 2EGBA 4EB3A 2PB4A 1V9AA 2EHCA 1PJSA 2NPNA 3UV6A 2P9DA 3DNFA 3SZOA 2ZVCA 4E16A 2P6DA 2EK4A 2E4NA 2DV3A 1WNGA 3F7TA 3URKA 2EKAA 2EL2A 2ED5A 2PB5A 1VCEA 3KWPA 2E8QA 2HUXA 2OWGA 1WDEA 3UTDA 4MV0A 2P5FA 2YBOA 3NDCA 3FFYA 2OWKA 2PCGA 2EHLA 2EK3A 2BB3A 2KYYA 4MUXA 2DSHA 1WYZA 4H4DA 2OWUA 2EH4A 2P6KA 2DV7A 2ELEA 2PCHA 2EL0A 1VA0A 2CBFA 2DEKA 2OWFA 2Z6RA 3ND1A 2QBUA 3UV3A 2OWVA 1S4DA 1VE2A 2EK7A 2E15A 2EGLA 2E8HA 3FQ6A 2E08A 2E16A 2E8SA 3UWMA 2EJKA 2EH5A 2P5CA 2ELDA 2PCKA 2HUQA
chains in the Genus database with same CATH topology
1CBFA 4MV5A 2PCMA 2ENIA 2E17A 2HUVA 3HH1A 2EMRA 2PB6A 2P6LA 2PCAA 2EH2A 3SZLA 2EN5A 2EJZA 2E7RA 3NUTA 2EMUA 3KE8A 2DSGA 2EEQA 2YBQA 3KEMA 2E0KA 1PJTA 3UV7A 2HR8A 4MUYA 2E4RA 4N7BA 2PCIA 1PJQA 2DV4A 3ZGLA 5HW4A 3KEFA 2DXXA 4H4CA 3ZGNA 2DXVA 2ZVBA 3I4TA 3LMMA 3KELA 2P2XA 2ED3A 2EJJA 3KE9A 4H4EA 3T0FA 3T0GA 2HUTA 3SZUA 3UTCA 2P6IA 2EGSA 2E0NA 2DSIA 2DXWA 2EK2A 1VHVA 2DV5A 2E07A 2E8RA 2EL3A 3NEIA 2EL1A 3TIXB 2EGBA 4EB3A 2PB4A 1V9AA 2EHCA 1PJSA 2NPNA 3UV6A 2P9DA 3DNFA 3SZOA 2ZVCA 4E16A 2P6DA 2EK4A 2E4NA 2DV3A 1WNGA 3F7TA 3URKA 2EKAA 2EL2A 2ED5A 2PB5A 1VCEA 3KWPA 2E8QA 2HUXA 2OWGA 1WDEA 3UTDA 4MV0A 2P5FA 2YBOA 3NDCA 3FFYA 2OWKA 2PCGA 2EHLA 2EK3A 2BB3A 2KYYA 4MUXA 2DSHA 1WYZA 4H4DA 2OWUA 2EH4A 2P6KA 2DV7A 2ELEA 2PCHA 2EL0A 1VA0A 2CBFA 2DEKA 2OWFA 2Z6RA 3ND1A 2QBUA 3UV3A 2OWVA 1S4DA 1VE2A 2EK7A 2E15A 2EGLA 2E8HA 3FQ6A 2E08A 2E16A 2E8SA 3UWMA 2EJKA 2EH5A 2P5CA 2ELDA 2PCKA 2HUQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1CBF A;  2PCM A;  2ENI A;  2E17 A;  2HUV A;  3HH1 A;  2EMR A;  2PB6 A;  2P6L A;  2PCA A;  2EH2 A;  2EN5 A;  2EJZ A;  2E7R A;  3NUT A;  2EMU A;  2DSG A;  2EEQ A;  2YBQ A;  2E0K A;  1PJT A;  2HR8 A;  2E4R A;  2PCI A;  1PJQ A;  2DV4 A;  5HW4 A;  2DXX A;  2DXV A;  2ZVB A;  3I4T A;  2P2X A;  2ED3 A;  2EJJ A;  2HUT A;  2P6I A;  2EGS A;  2E0N A;  2DSI A;  2DXW A;  2EK2 A;  1VHV A;  2DV5 A;  2E07 A;  2E8R A;  2EL3 A;  3NEI A;  2EL1 A;  2EGB A;  2PB4 A;  1V9A A;  2EHC A;  1PJS A;  2NPN A;  2P9D A;  2ZVC A;  4E16 A;  2P6D A;  2EK4 A;  2E4N A;  2DV3 A;  1WNG A;  2EKA A;  2EL2 A;  2ED5 A;  2PB5 A;  1VCE A;  3KWP A;  2E8Q A;  2HUX A;  2OWG A;  1WDE A;  2P5F A;  2YBO A;  3NDC A;  3FFY A;  2OWK A;  2PCG A;  2EHL A;  2EK3 A;  2BB3 A;  2DSH A;  1WYZ A;  2OWU A;  2EH4 A;  2P6K A;  2DV7 A;  2ELE A;  2PCH A;  2EL0 A;  1VA0 A;  2CBF A;  2DEK A;  2OWF A;  2Z6R A;  3ND1 A;  2QBU A;  2OWV A;  1S4D A;  1VE2 A;  2EK7 A;  2E15 A;  2EGL A;  2E8H A;  3FQ6 A;  2E08 A;  2E16 A;  2E8S A;  2EJK A;  2EH5 A;  2P5C A;  2ELD A;  2PCK A;  2HUQ A; 
#chains in the Genus database with same CATH topology
 1CBF A;  4MV5 A;  2PCM A;  2ENI A;  2E17 A;  2HUV A;  3HH1 A;  2EMR A;  2PB6 A;  2P6L A;  2PCA A;  2EH2 A;  3SZL A;  2EN5 A;  2EJZ A;  2E7R A;  3NUT A;  2EMU A;  3KE8 A;  2DSG A;  2EEQ A;  2YBQ A;  3KEM A;  2E0K A;  1PJT A;  3UV7 A;  2HR8 A;  4MUY A;  2E4R A;  4N7B A;  2PCI A;  1PJQ A;  2DV4 A;  3ZGL A;  5HW4 A;  3KEF A;  2DXX A;  4H4C A;  3ZGN A;  2DXV A;  2ZVB A;  3I4T A;  3LMM A;  3KEL A;  2P2X A;  2ED3 A;  2EJJ A;  3KE9 A;  4H4E A;  3T0F A;  3T0G A;  2HUT A;  3SZU A;  3UTC A;  2P6I A;  2EGS A;  2E0N A;  2DSI A;  2DXW A;  2EK2 A;  1VHV A;  2DV5 A;  2E07 A;  2E8R A;  2EL3 A;  3NEI A;  2EL1 A;  3TIX B;  2EGB A;  4EB3 A;  2PB4 A;  1V9A A;  2EHC A;  1PJS A;  2NPN A;  3UV6 A;  2P9D A;  3DNF A;  3SZO A;  2ZVC A;  4E16 A;  2P6D A;  2EK4 A;  2E4N A;  2DV3 A;  1WNG A;  3F7T A;  3URK A;  2EKA A;  2EL2 A;  2ED5 A;  2PB5 A;  1VCE A;  3KWP A;  2E8Q A;  2HUX A;  2OWG A;  1WDE A;  3UTD A;  4MV0 A;  2P5F A;  2YBO A;  3NDC A;  3FFY A;  2OWK A;  2PCG A;  2EHL A;  2EK3 A;  2BB3 A;  2KYY A;  4MUX A;  2DSH A;  1WYZ A;  4H4D A;  2OWU A;  2EH4 A;  2P6K A;  2DV7 A;  2ELE A;  2PCH A;  2EL0 A;  1VA0 A;  2CBF A;  2DEK A;  2OWF A;  2Z6R A;  3ND1 A;  2QBU A;  3UV3 A;  2OWV A;  1S4D A;  1VE2 A;  2EK7 A;  2E15 A;  2EGL A;  2E8H A;  3FQ6 A;  2E08 A;  2E16 A;  2E8S A;  3UWM A;  2EJK A;  2EH5 A;  2P5C A;  2ELD A;  2PCK A;  2HUQ A; 
#chains in the Genus database with same CATH homology
 1CBF A;  4MV5 A;  2PCM A;  2ENI A;  2E17 A;  2HUV A;  3HH1 A;  2EMR A;  2PB6 A;  2P6L A;  2PCA A;  2EH2 A;  3SZL A;  2EN5 A;  2EJZ A;  2E7R A;  3NUT A;  2EMU A;  3KE8 A;  2DSG A;  2EEQ A;  2YBQ A;  3KEM A;  2E0K A;  1PJT A;  3UV7 A;  2HR8 A;  4MUY A;  2E4R A;  4N7B A;  2PCI A;  1PJQ A;  2DV4 A;  3ZGL A;  5HW4 A;  3KEF A;  2DXX A;  4H4C A;  3ZGN A;  2DXV A;  2ZVB A;  3I4T A;  3LMM A;  3KEL A;  2P2X A;  2ED3 A;  2EJJ A;  3KE9 A;  4H4E A;  3T0F A;  3T0G A;  2HUT A;  3SZU A;  3UTC A;  2P6I A;  2EGS A;  2E0N A;  2DSI A;  2DXW A;  2EK2 A;  1VHV A;  2DV5 A;  2E07 A;  2E8R A;  2EL3 A;  3NEI A;  2EL1 A;  3TIX B;  2EGB A;  4EB3 A;  2PB4 A;  1V9A A;  2EHC A;  1PJS A;  2NPN A;  3UV6 A;  2P9D A;  3DNF A;  3SZO A;  2ZVC A;  4E16 A;  2P6D A;  2EK4 A;  2E4N A;  2DV3 A;  1WNG A;  3F7T A;  3URK A;  2EKA A;  2EL2 A;  2ED5 A;  2PB5 A;  1VCE A;  3KWP A;  2E8Q A;  2HUX A;  2OWG A;  1WDE A;  3UTD A;  4MV0 A;  2P5F A;  2YBO A;  3NDC A;  3FFY A;  2OWK A;  2PCG A;  2EHL A;  2EK3 A;  2BB3 A;  2KYY A;  4MUX A;  2DSH A;  1WYZ A;  4H4D A;  2OWU A;  2EH4 A;  2P6K A;  2DV7 A;  2ELE A;  2PCH A;  2EL0 A;  1VA0 A;  2CBF A;  2DEK A;  2OWF A;  2Z6R A;  3ND1 A;  2QBU A;  3UV3 A;  2OWV A;  1S4D A;  1VE2 A;  2EK7 A;  2E15 A;  2EGL A;  2E8H A;  3FQ6 A;  2E08 A;  2E16 A;  2E8S A;  3UWM A;  2EJK A;  2EH5 A;  2P5C A;  2ELD A;  2PCK A;  2HUQ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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