The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
126
|
sequence length |
442
|
structure length |
407
|
Chain Sequence |
PIVEPFALAHATIVTGDKAGTILRNMTIVVGADGRIEQVAPSIETSIPAEYHYLDGTGKIVMPGLINAHTHLFSYMAATVKHNATTLLESGVTTIRTLGDVGYEVVTLRDQIDAGQILGPRILASGPLMAIPEGHGAPLIALTSGTPEEARTAVAQNLKAGVNAIKIAATGGVTDAQEIQMSVEQMRAICDEAHQYGVIVGAHAQSPEGVRRSLLAGVDTIEHGSVLDDELIGMFRHNPNALRGYSALIPTLSAGLPLTLLGQDVTGITDIQLENSKNVVGGMVSGARQAHEAGLMIGVGTDTGMTFVPQYATWRELELLVAYAGFSPAEALHAATAVNASILGVDAETGSLEVGKSADLLVLNANPLDDLRALEHPALVIAAGHPVWRPGPKRFADIDALLDEAYA
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
publication title |
Crystal structure of putative prolidase from Bifidobacterium longum
rcsb |
molecule tags |
Hydrolase
|
source organism |
Bifidobacterium longum ncc2705
|
molecule keywords |
Possible prolidase
|
total genus |
126
|
structure length |
407
|
sequence length |
442
|
ec nomenclature | |
pdb deposition date | 2007-03-24 |
chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
---|---|---|---|
A | PF01979 | Amidohydro_1 | Amidohydrolase family |
cath code
| Class | Architecture | Topology | Homology | Domain |
---|---|---|---|---|---|
Mainly Alpha | Up-down Bundle | Methane Monooxygenase Hydroxylase; Chain G, domain 1 | Methane Monooxygenase Hydroxylase; Chain G, domain 1 | ||
Mainly Beta | Roll | Urease, subunit C; domain 1 | Urease, subunit C, domain 1 | ||
Alpha Beta | 2-Layer Sandwich | Translation Initiation Factor IF3 | Translation Initiation Factor IF3 | ||
Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Rossmann fold |