2P9DA

Crystal structure of ph0725 from pyrococcus horikoshii ot3
Total Genus 83
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
83
sequence length
265
structure length
265
Chain Sequence
MVLYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQKLIGKEIRVMSREDVELNFENIVLPLAKENDVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSIYSAVGITGLHIYKFGKSATVAYPEGNWFPTSYYDVIKENAERGLHTLLFLDIKAEKRMYMTANEAMELLLKVEDMKKGGVFTDDTLVVVLARAGSLNPTIRAGYVKDLIREDFGDPPHILIVPGKLHIVEAEYLVEIAGAPREILRVNV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of PH0725 from Pyrococcus horikoshii OT3
rcsb
source organism Pyrococcus horikoshii
molecule tags Transferase
molecule keywords diphthine synthase
total genus 83
structure length 265
sequence length 265
chains with identical sequence B
ec nomenclature ec 2.1.1.98: Diphthine synthase.
pdb deposition date 2007-03-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00590 TP_methylase Tetrapyrrole (Corrin/Porphyrin) Methylases
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.950.10 Alpha Beta 2-Layer Sandwich Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 2p9dA02
3.40.1010.10 Alpha Beta 3-Layer(aba) Sandwich Cobalt-precorrin-4 Transmethylase; domain 1 Cobalt-precorrin-4 Transmethylase; Domain 1 2p9dA01
1VHVA 2E08A 2EHLA 2E4RA 2DSGA 2HR8A 2HUTA 2EK4A 2DEKA 2DSIA 2OWKA 2EMUA 2PB6A 2EGLA 2HUVA 1PJTA 3I4TA 2EL3A 2OWUA 2ED3A 2ELEA 2EJJA 2P5CA 2E4NA 2NPNA 2P6DA 2PB4A 2PCMA 2P9DA 3NDCA 2EL2A 2BB3A 2P6KA 2QBUA 2EK2A 2PCHA 3ND1A 2Z6RA 2EH5A 1CBFA 2E16A 2DXVA 2EK3A 2EK7A 2PCGA 2E8QA 2P6LA 2EH4A 1V9AA 2OWFA 4E16A 2E8HA 2E07A 2DV5A 2EHCA 2E8SA 2DXWA 2P2XA 2EL0A 2DV3A 2E17A 2ELDA 2P5FA 2ZVBA 1PJSA 1WYZA 2E0NA 2OWGA 2EGBA 2E15A 1VE2A 2EH2A 2ZVCA 2E7RA 2PB5A 2DXXA 5HW4A 2EJZA 2EN5A 1WNGA 1S4DA 2ED5A 2EJKA 3FQ6A 2YBQA 2EGSA 3HH1A 2E0KA 1PJQA 2HUQA 2EKAA 2HUXA 2ENIA 2P6IA 2DV4A 2EL1A 3NUTA 2DV7A 3KWPA 2PCAA 3FFYA 2PCIA 2PCKA 2E8RA 1VCEA 1WDEA 2CBFA 1VA0A 2EMRA 3NEIA 2EEQA 2OWVA 2YBOA 2DSHA
chains in the Genus database with same CATH superfamily
1VHVA 2E08A 2EHLA 3DNFA 2E4RA 3KELA 2DSGA 2HR8A 2KYYA 3UV6A 2HUTA 2EK4A 2DEKA 2DSIA 2OWKA 2EMUA 4MV0A 2PB6A 2EGLA 2HUVA 1PJTA 4N7BA 3I4TA 2EL3A 3UWMA 2OWUA 3UV7A 2ED3A 2ELEA 3ZGLA 2EJJA 2P5CA 2E4NA 2NPNA 2P6DA 2PB4A 3SZOA 2PCMA 4H4DA 4MUXA 3KE9A 2P9DA 4EB3A 3NDCA 2EL2A 2BB3A 4MUYA 3UTCA 3ZGNA 4H4EA 2P6KA 2QBUA 2EK2A 2PCHA 3ND1A 3TIXB 2Z6RA 3UTDA 2EH5A 1CBFA 2E16A 2DXVA 2EK3A 2EK7A 2PCGA 3KEMA 2E8QA 2P6LA 2EH4A 1V9AA 2OWFA 4E16A 3T0GA 2E8HA 2E07A 2DV5A 2EHCA 2E8SA 2DXWA 2P2XA 4H4CA 2EL0A 2DV3A 2E17A 3URKA 2ELDA 2P5FA 2ZVBA 1PJSA 1WYZA 2E0NA 2OWGA 3KE8A 2EGBA 2E15A 1VE2A 2EH2A 2ZVCA 2E7RA 2PB5A 2DXXA 5HW4A 2EJZA 2EN5A 1WNGA 3SZUA 1S4DA 2ED5A 2EJKA 3FQ6A 2YBQA 2EGSA 3HH1A 2E0KA 1PJQA 2HUQA 2EKAA 2HUXA 2ENIA 2P6IA 2DV4A 3SZLA 2EL1A 3T0FA 3NUTA 3F7TA 2DV7A 3KWPA 2PCAA 3LMMA 3FFYA 2PCIA 3UV3A 2PCKA 2E8RA 4MV5A 1VCEA 1WDEA 2CBFA 1VA0A 2EMRA 3KEFA 3NEIA 2EEQA 2OWVA 2YBOA 2DSHA
chains in the Genus database with same CATH topology
1VHVA 2E08A 2EHLA 3DNFA 2E4RA 3KELA 2DSGA 2HR8A 2KYYA 3UV6A 2HUTA 2EK4A 2DEKA 2DSIA 2OWKA 2EMUA 4MV0A 2PB6A 2EGLA 2HUVA 1PJTA 4N7BA 3I4TA 2EL3A 3UWMA 2OWUA 3UV7A 2ED3A 2ELEA 3ZGLA 2EJJA 2P5CA 2E4NA 2NPNA 2P6DA 2PB4A 3SZOA 2PCMA 4H4DA 4MUXA 3KE9A 2P9DA 4EB3A 3NDCA 2EL2A 2BB3A 4MUYA 3UTCA 3ZGNA 4H4EA 2P6KA 2QBUA 2EK2A 2PCHA 3ND1A 3TIXB 2Z6RA 3UTDA 2EH5A 1CBFA 2E16A 2DXVA 2EK3A 2EK7A 2PCGA 3KEMA 2E8QA 2P6LA 2EH4A 1V9AA 2OWFA 4E16A 3T0GA 2E8HA 2E07A 2DV5A 2EHCA 2E8SA 2DXWA 2P2XA 4H4CA 2EL0A 2DV3A 2E17A 3URKA 2ELDA 2P5FA 2ZVBA 1PJSA 1WYZA 2E0NA 2OWGA 3KE8A 2EGBA 2E15A 1VE2A 2EH2A 2ZVCA 2E7RA 2PB5A 2DXXA 5HW4A 2EJZA 2EN5A 1WNGA 3SZUA 1S4DA 2ED5A 2EJKA 3FQ6A 2YBQA 2EGSA 3HH1A 2E0KA 1PJQA 2HUQA 2EKAA 2HUXA 2ENIA 2P6IA 2DV4A 3SZLA 2EL1A 3T0FA 3NUTA 3F7TA 2DV7A 3KWPA 2PCAA 3LMMA 3FFYA 2PCIA 3UV3A 2PCKA 2E8RA 4MV5A 1VCEA 1WDEA 2CBFA 1VA0A 2EMRA 3KEFA 3NEIA 2EEQA 2OWVA 2YBOA 2DSHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1VHV A;  2E08 A;  2EHL A;  2E4R A;  2DSG A;  2HR8 A;  2HUT A;  2EK4 A;  2DEK A;  2DSI A;  2OWK A;  2EMU A;  2PB6 A;  2EGL A;  2HUV A;  1PJT A;  3I4T A;  2EL3 A;  2OWU A;  2ED3 A;  2ELE A;  2EJJ A;  2P5C A;  2E4N A;  2NPN A;  2P6D A;  2PB4 A;  2PCM A;  2P9D A;  3NDC A;  2EL2 A;  2BB3 A;  2P6K A;  2QBU A;  2EK2 A;  2PCH A;  3ND1 A;  2Z6R A;  2EH5 A;  1CBF A;  2E16 A;  2DXV A;  2EK3 A;  2EK7 A;  2PCG A;  2E8Q A;  2P6L A;  2EH4 A;  1V9A A;  2OWF A;  4E16 A;  2E8H A;  2E07 A;  2DV5 A;  2EHC A;  2E8S A;  2DXW A;  2P2X A;  2EL0 A;  2DV3 A;  2E17 A;  2ELD A;  2P5F A;  2ZVB A;  1PJS A;  1WYZ A;  2E0N A;  2OWG A;  2EGB A;  2E15 A;  1VE2 A;  2EH2 A;  2ZVC A;  2E7R A;  2PB5 A;  2DXX A;  5HW4 A;  2EJZ A;  2EN5 A;  1WNG A;  1S4D A;  2ED5 A;  2EJK A;  3FQ6 A;  2YBQ A;  2EGS A;  3HH1 A;  2E0K A;  1PJQ A;  2HUQ A;  2EKA A;  2HUX A;  2ENI A;  2P6I A;  2DV4 A;  2EL1 A;  3NUT A;  2DV7 A;  3KWP A;  2PCA A;  3FFY A;  2PCI A;  2PCK A;  2E8R A;  1VCE A;  1WDE A;  2CBF A;  1VA0 A;  2EMR A;  3NEI A;  2EEQ A;  2OWV A;  2YBO A;  2DSH A; 
#chains in the Genus database with same CATH topology
 1VHV A;  2E08 A;  2EHL A;  3DNF A;  2E4R A;  3KEL A;  2DSG A;  2HR8 A;  2KYY A;  3UV6 A;  2HUT A;  2EK4 A;  2DEK A;  2DSI A;  2OWK A;  2EMU A;  4MV0 A;  2PB6 A;  2EGL A;  2HUV A;  1PJT A;  4N7B A;  3I4T A;  2EL3 A;  3UWM A;  2OWU A;  3UV7 A;  2ED3 A;  2ELE A;  3ZGL A;  2EJJ A;  2P5C A;  2E4N A;  2NPN A;  2P6D A;  2PB4 A;  3SZO A;  2PCM A;  4H4D A;  4MUX A;  3KE9 A;  2P9D A;  4EB3 A;  3NDC A;  2EL2 A;  2BB3 A;  4MUY A;  3UTC A;  3ZGN A;  4H4E A;  2P6K A;  2QBU A;  2EK2 A;  2PCH A;  3ND1 A;  3TIX B;  2Z6R A;  3UTD A;  2EH5 A;  1CBF A;  2E16 A;  2DXV A;  2EK3 A;  2EK7 A;  2PCG A;  3KEM A;  2E8Q A;  2P6L A;  2EH4 A;  1V9A A;  2OWF A;  4E16 A;  3T0G A;  2E8H A;  2E07 A;  2DV5 A;  2EHC A;  2E8S A;  2DXW A;  2P2X A;  4H4C A;  2EL0 A;  2DV3 A;  2E17 A;  3URK A;  2ELD A;  2P5F A;  2ZVB A;  1PJS A;  1WYZ A;  2E0N A;  2OWG A;  3KE8 A;  2EGB A;  2E15 A;  1VE2 A;  2EH2 A;  2ZVC A;  2E7R A;  2PB5 A;  2DXX A;  5HW4 A;  2EJZ A;  2EN5 A;  1WNG A;  3SZU A;  1S4D A;  2ED5 A;  2EJK A;  3FQ6 A;  2YBQ A;  2EGS A;  3HH1 A;  2E0K A;  1PJQ A;  2HUQ A;  2EKA A;  2HUX A;  2ENI A;  2P6I A;  2DV4 A;  3SZL A;  2EL1 A;  3T0F A;  3NUT A;  3F7T A;  2DV7 A;  3KWP A;  2PCA A;  3LMM A;  3FFY A;  2PCI A;  3UV3 A;  2PCK A;  2E8R A;  4MV5 A;  1VCE A;  1WDE A;  2CBF A;  1VA0 A;  2EMR A;  3KEF A;  3NEI A;  2EEQ A;  2OWV A;  2YBO A;  2DSH A; 
#chains in the Genus database with same CATH homology
 1VHV A;  2E08 A;  2EHL A;  3DNF A;  2E4R A;  3KEL A;  2DSG A;  2HR8 A;  2KYY A;  3UV6 A;  2HUT A;  2EK4 A;  2DEK A;  2DSI A;  2OWK A;  2EMU A;  4MV0 A;  2PB6 A;  2EGL A;  2HUV A;  1PJT A;  4N7B A;  3I4T A;  2EL3 A;  3UWM A;  2OWU A;  3UV7 A;  2ED3 A;  2ELE A;  3ZGL A;  2EJJ A;  2P5C A;  2E4N A;  2NPN A;  2P6D A;  2PB4 A;  3SZO A;  2PCM A;  4H4D A;  4MUX A;  3KE9 A;  2P9D A;  4EB3 A;  3NDC A;  2EL2 A;  2BB3 A;  4MUY A;  3UTC A;  3ZGN A;  4H4E A;  2P6K A;  2QBU A;  2EK2 A;  2PCH A;  3ND1 A;  3TIX B;  2Z6R A;  3UTD A;  2EH5 A;  1CBF A;  2E16 A;  2DXV A;  2EK3 A;  2EK7 A;  2PCG A;  3KEM A;  2E8Q A;  2P6L A;  2EH4 A;  1V9A A;  2OWF A;  4E16 A;  3T0G A;  2E8H A;  2E07 A;  2DV5 A;  2EHC A;  2E8S A;  2DXW A;  2P2X A;  4H4C A;  2EL0 A;  2DV3 A;  2E17 A;  3URK A;  2ELD A;  2P5F A;  2ZVB A;  1PJS A;  1WYZ A;  2E0N A;  2OWG A;  3KE8 A;  2EGB A;  2E15 A;  1VE2 A;  2EH2 A;  2ZVC A;  2E7R A;  2PB5 A;  2DXX A;  5HW4 A;  2EJZ A;  2EN5 A;  1WNG A;  3SZU A;  1S4D A;  2ED5 A;  2EJK A;  3FQ6 A;  2YBQ A;  2EGS A;  3HH1 A;  2E0K A;  1PJQ A;  2HUQ A;  2EKA A;  2HUX A;  2ENI A;  2P6I A;  2DV4 A;  3SZL A;  2EL1 A;  3T0F A;  3NUT A;  3F7T A;  2DV7 A;  3KWP A;  2PCA A;  3LMM A;  3FFY A;  2PCI A;  3UV3 A;  2PCK A;  2E8R A;  4MV5 A;  1VCE A;  1WDE A;  2CBF A;  1VA0 A;  2EMR A;  3KEF A;  3NEI A;  2EEQ A;  2OWV A;  2YBO A;  2DSH A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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