2P9DA

Crystal structure of ph0725 from pyrococcus horikoshii ot3
Total Genus 83
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
83
sequence length
265
structure length
265
Chain Sequence
MVLYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQKLIGKEIRVMSREDVELNFENIVLPLAKENDVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSIYSAVGITGLHIYKFGKSATVAYPEGNWFPTSYYDVIKENAERGLHTLLFLDIKAEKRMYMTANEAMELLLKVEDMKKGGVFTDDTLVVVLARAGSLNPTIRAGYVKDLIREDFGDPPHILIVPGKLHIVEAEYLVEIAGAPREILRVNV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of PH0725 from Pyrococcus horikoshii OT3
rcsb
source organism Pyrococcus horikoshii
molecule tags Transferase
molecule keywords diphthine synthase
total genus 83
structure length 265
sequence length 265
chains with identical sequence B
ec nomenclature ec 2.1.1.98: Diphthine synthase.
pdb deposition date 2007-03-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00590 TP_methylase Tetrapyrrole (Corrin/Porphyrin) Methylases
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.950.10 Alpha Beta 2-Layer Sandwich Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 2p9dA02
3.40.1010.10 Alpha Beta 3-Layer(aba) Sandwich Cobalt-precorrin-4 Transmethylase; domain 1 Cobalt-precorrin-4 Transmethylase; Domain 1 2p9dA01
2HUVA 2EHLA 2HR8A 2EK7A 2PB6A 3ND1A 2E07A 2E8QA 2DV4A 2EK3A 2Z6RA 1WNGA 2HUQA 3I4TA 2EHCA 2CBFA 2DXVA 2PCGA 2ELEA 2PCAA 1WYZA 1CBFA 2EK2A 2EL2A 2DSIA 2E17A 2PCKA 2E8SA 1VA0A 3NEIA 2E4RA 3NDCA 2EH5A 2EL0A 2P6KA 2EK4A 2EKAA 2ED5A 2DSGA 2DEKA 2P5FA 2P6DA 2E16A 2P2XA 2E08A 1S4DA 2OWGA 1PJQA 1VE2A 2YBOA 2EL1A 2EMRA 2P6IA 2DSHA 3FQ6A 2E15A 2E0NA 2EEQA 2EN5A 2EGSA 4E16A 1V9AA 2EGBA 2ED3A 3FFYA 2QBUA 5HW4A 2PB4A 2E8HA 2EMUA 2EL3A 3HH1A 1PJSA 2OWKA 2EJZA 2EJKA 2PCIA 2P5CA 2ZVCA 2PCHA 2DXWA 2E7RA 2ENIA 2DXXA 2HUTA 2OWFA 2PB5A 2P6LA 2EJJA 2ZVBA 1VCEA 2OWVA 1PJTA 2EGLA 1VHVA 2BB3A 2HUXA 2P9DA 2EH2A 2E0KA 2OWUA 2DV7A 2DV5A 2DV3A 2E4NA 3NUTA 1WDEA 2E8RA 2EH4A 2YBQA 3KWPA 2ELDA 2PCMA 2NPNA
chains in the Genus database with same CATH superfamily
2HUVA 2EHLA 2HR8A 2EK7A 2PB6A 3ND1A 2E07A 2E8QA 2DV4A 2EK3A 2Z6RA 1WNGA 3ZGLA 2HUQA 3I4TA 3UV6A 2EHCA 2CBFA 2DXVA 2PCGA 2ELEA 3LMMA 2PCAA 1WYZA 1CBFA 2EK2A 2EL2A 3ZGNA 2DSIA 2E17A 2PCKA 2E8SA 1VA0A 3NEIA 4H4EA 3KEMA 2E4RA 3NDCA 2EH5A 2EL0A 2P6KA 2EK4A 2EKAA 2ED5A 2DSGA 2DEKA 2P5FA 2P6DA 3KEFA 2E16A 2P2XA 2E08A 1S4DA 2OWGA 1PJQA 1VE2A 2YBOA 4MV0A 2EL1A 3UWMA 2EMRA 2P6IA 3TIXB 3URKA 4EB3A 2DSHA 3FQ6A 2E15A 2E0NA 4MUXA 3KE8A 2EEQA 2EN5A 2EGSA 4E16A 1V9AA 2EGBA 2ED3A 3KE9A 3UV7A 3FFYA 3UTDA 2QBUA 3UV3A 5HW4A 2PB4A 2E8HA 2EMUA 2EL3A 3HH1A 1PJSA 2OWKA 2EJZA 2EJKA 2KYYA 2PCIA 2P5CA 4MV5A 2ZVCA 2PCHA 2DXWA 2E7RA 2ENIA 2DXXA 2HUTA 2OWFA 2PB5A 2P6LA 3SZLA 2EJJA 2ZVBA 1VCEA 2OWVA 1PJTA 2EGLA 3DNFA 3KELA 1VHVA 2BB3A 4MUYA 2HUXA 2P9DA 2EH2A 2E0KA 3SZOA 2OWUA 2DV7A 3SZUA 2DV5A 4H4CA 3T0FA 2DV3A 2E4NA 3NUTA 1WDEA 2E8RA 4H4DA 2EH4A 2YBQA 3F7TA 3KWPA 2ELDA 2PCMA 3T0GA 3UTCA 2NPNA 4N7BA
chains in the Genus database with same CATH topology
2HUVA 2EHLA 2HR8A 2EK7A 2PB6A 3ND1A 2E07A 2E8QA 2DV4A 2EK3A 2Z6RA 1WNGA 3ZGLA 2HUQA 3I4TA 3UV6A 2EHCA 2CBFA 2DXVA 2PCGA 2ELEA 3LMMA 2PCAA 1WYZA 1CBFA 2EK2A 2EL2A 3ZGNA 2DSIA 2E17A 2PCKA 2E8SA 1VA0A 3NEIA 4H4EA 3KEMA 2E4RA 3NDCA 2EH5A 2EL0A 2P6KA 2EK4A 2EKAA 2ED5A 2DSGA 2DEKA 2P5FA 2P6DA 3KEFA 2E16A 2P2XA 2E08A 1S4DA 2OWGA 1PJQA 1VE2A 2YBOA 4MV0A 2EL1A 3UWMA 2EMRA 2P6IA 3TIXB 3URKA 4EB3A 2DSHA 3FQ6A 2E15A 2E0NA 4MUXA 3KE8A 2EEQA 2EN5A 2EGSA 4E16A 1V9AA 2EGBA 2ED3A 3KE9A 3UV7A 3FFYA 3UTDA 2QBUA 3UV3A 5HW4A 2PB4A 2E8HA 2EMUA 2EL3A 3HH1A 1PJSA 2OWKA 2EJZA 2EJKA 2KYYA 2PCIA 2P5CA 4MV5A 2ZVCA 2PCHA 2DXWA 2E7RA 2ENIA 2DXXA 2HUTA 2OWFA 2PB5A 2P6LA 3SZLA 2EJJA 2ZVBA 1VCEA 2OWVA 1PJTA 2EGLA 3DNFA 3KELA 1VHVA 2BB3A 4MUYA 2HUXA 2P9DA 2EH2A 2E0KA 3SZOA 2OWUA 2DV7A 3SZUA 2DV5A 4H4CA 3T0FA 2DV3A 2E4NA 3NUTA 1WDEA 2E8RA 4H4DA 2EH4A 2YBQA 3F7TA 3KWPA 2ELDA 2PCMA 3T0GA 3UTCA 2NPNA 4N7BA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2HUV A;  2EHL A;  2HR8 A;  2EK7 A;  2PB6 A;  3ND1 A;  2E07 A;  2E8Q A;  2DV4 A;  2EK3 A;  2Z6R A;  1WNG A;  2HUQ A;  3I4T A;  2EHC A;  2CBF A;  2DXV A;  2PCG A;  2ELE A;  2PCA A;  1WYZ A;  1CBF A;  2EK2 A;  2EL2 A;  2DSI A;  2E17 A;  2PCK A;  2E8S A;  1VA0 A;  3NEI A;  2E4R A;  3NDC A;  2EH5 A;  2EL0 A;  2P6K A;  2EK4 A;  2EKA A;  2ED5 A;  2DSG A;  2DEK A;  2P5F A;  2P6D A;  2E16 A;  2P2X A;  2E08 A;  1S4D A;  2OWG A;  1PJQ A;  1VE2 A;  2YBO A;  2EL1 A;  2EMR A;  2P6I A;  2DSH A;  3FQ6 A;  2E15 A;  2E0N A;  2EEQ A;  2EN5 A;  2EGS A;  4E16 A;  1V9A A;  2EGB A;  2ED3 A;  3FFY A;  2QBU A;  5HW4 A;  2PB4 A;  2E8H A;  2EMU A;  2EL3 A;  3HH1 A;  1PJS A;  2OWK A;  2EJZ A;  2EJK A;  2PCI A;  2P5C A;  2ZVC A;  2PCH A;  2DXW A;  2E7R A;  2ENI A;  2DXX A;  2HUT A;  2OWF A;  2PB5 A;  2P6L A;  2EJJ A;  2ZVB A;  1VCE A;  2OWV A;  1PJT A;  2EGL A;  1VHV A;  2BB3 A;  2HUX A;  2P9D A;  2EH2 A;  2E0K A;  2OWU A;  2DV7 A;  2DV5 A;  2DV3 A;  2E4N A;  3NUT A;  1WDE A;  2E8R A;  2EH4 A;  2YBQ A;  3KWP A;  2ELD A;  2PCM A;  2NPN A; 
#chains in the Genus database with same CATH topology
 2HUV A;  2EHL A;  2HR8 A;  2EK7 A;  2PB6 A;  3ND1 A;  2E07 A;  2E8Q A;  2DV4 A;  2EK3 A;  2Z6R A;  1WNG A;  3ZGL A;  2HUQ A;  3I4T A;  3UV6 A;  2EHC A;  2CBF A;  2DXV A;  2PCG A;  2ELE A;  3LMM A;  2PCA A;  1WYZ A;  1CBF A;  2EK2 A;  2EL2 A;  3ZGN A;  2DSI A;  2E17 A;  2PCK A;  2E8S A;  1VA0 A;  3NEI A;  4H4E A;  3KEM A;  2E4R A;  3NDC A;  2EH5 A;  2EL0 A;  2P6K A;  2EK4 A;  2EKA A;  2ED5 A;  2DSG A;  2DEK A;  2P5F A;  2P6D A;  3KEF A;  2E16 A;  2P2X A;  2E08 A;  1S4D A;  2OWG A;  1PJQ A;  1VE2 A;  2YBO A;  4MV0 A;  2EL1 A;  3UWM A;  2EMR A;  2P6I A;  3TIX B;  3URK A;  4EB3 A;  2DSH A;  3FQ6 A;  2E15 A;  2E0N A;  4MUX A;  3KE8 A;  2EEQ A;  2EN5 A;  2EGS A;  4E16 A;  1V9A A;  2EGB A;  2ED3 A;  3KE9 A;  3UV7 A;  3FFY A;  3UTD A;  2QBU A;  3UV3 A;  5HW4 A;  2PB4 A;  2E8H A;  2EMU A;  2EL3 A;  3HH1 A;  1PJS A;  2OWK A;  2EJZ A;  2EJK A;  2KYY A;  2PCI A;  2P5C A;  4MV5 A;  2ZVC A;  2PCH A;  2DXW A;  2E7R A;  2ENI A;  2DXX A;  2HUT A;  2OWF A;  2PB5 A;  2P6L A;  3SZL A;  2EJJ A;  2ZVB A;  1VCE A;  2OWV A;  1PJT A;  2EGL A;  3DNF A;  3KEL A;  1VHV A;  2BB3 A;  4MUY A;  2HUX A;  2P9D A;  2EH2 A;  2E0K A;  3SZO A;  2OWU A;  2DV7 A;  3SZU A;  2DV5 A;  4H4C A;  3T0F A;  2DV3 A;  2E4N A;  3NUT A;  1WDE A;  2E8R A;  4H4D A;  2EH4 A;  2YBQ A;  3F7T A;  3KWP A;  2ELD A;  2PCM A;  3T0G A;  3UTC A;  2NPN A;  4N7B A; 
#chains in the Genus database with same CATH homology
 2HUV A;  2EHL A;  2HR8 A;  2EK7 A;  2PB6 A;  3ND1 A;  2E07 A;  2E8Q A;  2DV4 A;  2EK3 A;  2Z6R A;  1WNG A;  3ZGL A;  2HUQ A;  3I4T A;  3UV6 A;  2EHC A;  2CBF A;  2DXV A;  2PCG A;  2ELE A;  3LMM A;  2PCA A;  1WYZ A;  1CBF A;  2EK2 A;  2EL2 A;  3ZGN A;  2DSI A;  2E17 A;  2PCK A;  2E8S A;  1VA0 A;  3NEI A;  4H4E A;  3KEM A;  2E4R A;  3NDC A;  2EH5 A;  2EL0 A;  2P6K A;  2EK4 A;  2EKA A;  2ED5 A;  2DSG A;  2DEK A;  2P5F A;  2P6D A;  3KEF A;  2E16 A;  2P2X A;  2E08 A;  1S4D A;  2OWG A;  1PJQ A;  1VE2 A;  2YBO A;  4MV0 A;  2EL1 A;  3UWM A;  2EMR A;  2P6I A;  3TIX B;  3URK A;  4EB3 A;  2DSH A;  3FQ6 A;  2E15 A;  2E0N A;  4MUX A;  3KE8 A;  2EEQ A;  2EN5 A;  2EGS A;  4E16 A;  1V9A A;  2EGB A;  2ED3 A;  3KE9 A;  3UV7 A;  3FFY A;  3UTD A;  2QBU A;  3UV3 A;  5HW4 A;  2PB4 A;  2E8H A;  2EMU A;  2EL3 A;  3HH1 A;  1PJS A;  2OWK A;  2EJZ A;  2EJK A;  2KYY A;  2PCI A;  2P5C A;  4MV5 A;  2ZVC A;  2PCH A;  2DXW A;  2E7R A;  2ENI A;  2DXX A;  2HUT A;  2OWF A;  2PB5 A;  2P6L A;  3SZL A;  2EJJ A;  2ZVB A;  1VCE A;  2OWV A;  1PJT A;  2EGL A;  3DNF A;  3KEL A;  1VHV A;  2BB3 A;  4MUY A;  2HUX A;  2P9D A;  2EH2 A;  2E0K A;  3SZO A;  2OWU A;  2DV7 A;  3SZU A;  2DV5 A;  4H4C A;  3T0F A;  2DV3 A;  2E4N A;  3NUT A;  1WDE A;  2E8R A;  4H4D A;  2EH4 A;  2YBQ A;  3F7T A;  3KWP A;  2ELD A;  2PCM A;  3T0G A;  3UTC A;  2NPN A;  4N7B A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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