2P9ID

Crystal structure of bovine arp2/3 complex co-crystallized with adp and crosslinked with gluteraldehyde
Total Genus 89
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
89
sequence length
283
structure length
280
Chain Sequence
MILLEVNNRIIEETLALKFENAAAGNKPEAVEVTFADFDGVLYHISNPNGDKTKVMVSISLKFYKELQAHGADELLKRVYGSYLVNPESGYNVSLLYDLENLPASKDSIVHQAGMLKRNCFASVFEKYFQFQEEGKEGENRAVIHYRDDETMYVESKKDRVTVVFSTVFKDDDDVVIGKVFMQEFKEGRRASHTAPQVLFSHREPPLELDAAVGDNIGYITFVLFPRHTNASARDNTINLIHTFRDYLHYHIKCSKAYIHTRMRAKTSDFLKVLNRARPD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural protein
molecule keywords Actin-like protein 3
publication title Insights into the Influence of Nucleotides on Actin Family Proteins from Seven Structures of Arp2/3 Complex.
pubmed doi rcsb
source organism Bos taurus
total genus 89
structure length 280
sequence length 283
ec nomenclature
pdb deposition date 2007-03-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF04045 P34-Arc Arp2/3 complex, 34 kD subunit p34-Arc
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1460.20 Alpha Beta 2-Layer Sandwich Yope Regulator; Chain: A, Yope Regulator; Chain: A, 2p9iD02
3.30.1460.20 Alpha Beta 2-Layer Sandwich Yope Regulator; Chain: A, Yope Regulator; Chain: A, 2p9iD01
2P9UF 2P9ID 2P9KF 2P9LD 1K8KD 2P9IF 2P9SD 4XEID 2P9LF 1K8KF 4JD2D 2P9ND 3UKRD 2P9SF 4XEIF 3ULED 2P9NF 3DWLD 4JD2F 3RSED 1TYQD 3DXKD 3UKRF 3ULEF 3DWLF 2P9PD 1U2VD 3DXKF 3RSEF 1TYQF 2P9PF 1U2VF 3UKUD 3DXMD 2P9UD 3DXMF 3UKUF 2P9KD
chains in the Genus database with same CATH superfamily
4H5BA 2BSIA 2P9UF 4G6TA 4GSLC 2P9ID 4EBRA 2P9KF 2P9KD 2P9LD 3KXYA 1K8KD 1XKPC 1K6ZA 2P9IF 2P9SD 1RY9A 3EPUA 4XEID 2P9LF 3TU3A 3VX8B 2BSHA 2FM8A 1K8KF 2OD0A 3CXJA 2P9ND 4JD2D 2MQDA 2BHOA 2P9SF 4JMFB 1N5BA 4XEIF 3UKRD 3ULED 4AKXA 1TTWA 2P9NF 2XGAA 3DWLD 1K3EA 2BSJA 4JD2F 1TYQD 3DXKD 3RSED 3UKRF 1JYAA 1S28A 3ULEF 3DWLF 2P9PD 1U2VD 3DXKF 3RSEF 1TYQF 4GF3A 2DYTA 2P9PF 1U2VF 1XKPB 3UKUD 2LPUA 3DXMD 2KC5A 1L2WA 2P9UD 3DXMF 3UKUF 3VX7B 2PLGA 1K3SA 1JYOA
chains in the Genus database with same CATH topology
4H5BA 2BSIA 2P9UF 4G6TA 4GSLC 2P9ID 4EBRA 2P9KF 2P9KD 2P9LD 3KXYA 1K8KD 1XKPC 1K6ZA 2P9IF 2P9SD 1RY9A 3EPUA 4XEID 2P9LF 3TU3A 3VX8B 2BSHA 2FM8A 1K8KF 3CXJA 4JD2D 2P9ND 4JMFB 2MQDA 2BHOA 2P9SF 4XEIF 1N5BA 3UKRD 3ULED 4AKXA 1TTWA 2P9NF 2XGAA 3DWLD 1K3EA 2BSJA 4JD2F 1TYQD 3DXKD 3RSED 3UKRF 1JYAA 1S28A 3ULEF 3DWLF 2P9PD 1U2VD 3DXKF 3RSEF 1TYQF 4GF3A 2DYTA 2P9PF 1U2VF 1XKPB 3UKUD 2LPUA 3DXMD 2KC5A 1L2WA 2P9UD 3DXMF 3UKUF 3VX7B 2PLGA 1K3SA 1JYOA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2P9U F;  2P9I D;  2P9K F;  2P9L D;  1K8K D;  2P9I F;  2P9S D;  4XEI D;  2P9L F;  1K8K F;  4JD2 D;  2P9N D;  3UKR D;  2P9S F;  4XEI F;  3ULE D;  2P9N F;  3DWL D;  4JD2 F;  3RSE D;  1TYQ D;  3DXK D;  3UKR F;  3ULE F;  3DWL F;  2P9P D;  1U2V D;  3DXK F;  3RSE F;  1TYQ F;  2P9P F;  1U2V F;  3UKU D;  3DXM D;  2P9U D;  3DXM F;  3UKU F;  2P9K D; 
#chains in the Genus database with same CATH topology
 4H5B A;  2BSI A;  2P9U F;  4G6T A;  4GSL C;  2P9I D;  4EBR A;  2P9K F;  2P9K D;  2P9L D;  3KXY A;  1K8K D;  1XKP C;  1K6Z A;  2P9I F;  2P9S D;  1RY9 A;  3EPU A;  4XEI D;  2P9L F;  3TU3 A;  3VX8 B;  2BSH A;  2FM8 A;  1K8K F;  2OD0 A;  3CXJ A;  2P9N D;  4JD2 D;  2MQD A;  2BHO A;  2P9S F;  4JMF B;  1N5B A;  4XEI F;  3UKR D;  3ULE D;  4AKX A;  1TTW A;  2P9N F;  2XGA A;  3DWL D;  1K3E A;  2BSJ A;  4JD2 F;  1TYQ D;  3DXK D;  3RSE D;  3UKR F;  1JYA A;  1S28 A;  3ULE F;  3DWL F;  2P9P D;  1U2V D;  3DXK F;  3RSE F;  1TYQ F;  4GF3 A;  2DYT A;  2P9P F;  1U2V F;  1XKP B;  3UKU D;  2LPU A;  3DXM D;  2KC5 A;  1L2W A;  2P9U D;  3DXM F;  3UKU F;  3VX7 B;  2PLG A;  1K3S A;  1JYO A; 
#chains in the Genus database with same CATH homology
 4H5B A;  2BSI A;  2P9U F;  4G6T A;  4GSL C;  2P9I D;  4EBR A;  2P9K F;  2P9K D;  2P9L D;  3KXY A;  1K8K D;  1XKP C;  1K6Z A;  2P9I F;  2P9S D;  1RY9 A;  3EPU A;  4XEI D;  2P9L F;  3TU3 A;  3VX8 B;  2BSH A;  2FM8 A;  1K8K F;  3CXJ A;  4JD2 D;  2P9N D;  4JMF B;  2MQD A;  2BHO A;  2P9S F;  4XEI F;  1N5B A;  3UKR D;  3ULE D;  4AKX A;  1TTW A;  2P9N F;  2XGA A;  3DWL D;  1K3E A;  2BSJ A;  4JD2 F;  1TYQ D;  3DXK D;  3RSE D;  3UKR F;  1JYA A;  1S28 A;  3ULE F;  3DWL F;  2P9P D;  1U2V D;  3DXK F;  3RSE F;  1TYQ F;  4GF3 A;  2DYT A;  2P9P F;  1U2V F;  1XKP B;  3UKU D;  2LPU A;  3DXM D;  2KC5 A;  1L2W A;  2P9U D;  3DXM F;  3UKU F;  3VX7 B;  2PLG A;  1K3S A;  1JYO A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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