2P9PD

Crystal structure of bovine arp2/3 complex co-crystallized with adp
Total Genus 91
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
91
sequence length
283
structure length
273
Chain Sequence
MILLEVNNRIIEETLALKFENAAAGNKPEAVEVTFADFDGVLYHISNPNGDKTKVMVSISLKFYKELQAHGADELLKRVYGSYLVNPESGYNVSLLYDLENLPASKDSIVHQAGMLKRNCFASVFEKYFQFQEEGKEGENRAVIHYRDDETMYVESKKDRVTVVFSTVFKDDDDVVIGKVFMQEFKEGRRASHTAPQVLFSHREPPGDNIGYITFVLFPRHTNASARDNTINLIHTFRDYLHYHIKCSKAYIHTRMRAKTSDFLKVLNRARPD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural protein
molecule keywords Actin-like protein 3
publication title Insights into the Influence of Nucleotides on Actin Family Proteins from Seven Structures of Arp2/3 Complex.
pubmed doi rcsb
source organism Bos taurus
total genus 91
structure length 273
sequence length 283
ec nomenclature
pdb deposition date 2007-03-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF04045 P34-Arc Arp2/3 complex, 34 kD subunit p34-Arc
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1460.20 Alpha Beta 2-Layer Sandwich Yope Regulator; Chain: A, Yope Regulator; Chain: A, 2p9pD02
3.30.1460.20 Alpha Beta 2-Layer Sandwich Yope Regulator; Chain: A, Yope Regulator; Chain: A, 2p9pD01
2P9KD 1TYQF 1U2VD 2P9SD 3UKUF 3RSED 2P9UD 2P9ND 3DXMD 4XEIF 2P9LF 3DWLD 4JD2D 3UKRD 1K8KD 3ULED 2P9KF 3DXKD 2P9ID 1U2VF 2P9SF 3RSEF 2P9UF 2P9PD 4JD2F 1TYQD 2P9NF 3DXMF 3DWLF 3UKRF 3UKUD 1K8KF 3ULEF 4XEID 2P9LD 3DXKF 2P9IF 2P9PF
chains in the Genus database with same CATH superfamily
2P9KD 1TYQF 3EPUA 3KXYA 1U2VD 2P9SD 3CXJA 3UKUF 3RSED 1RY9A 2P9UD 3VX8B 1JYAA 2OD0A 4EBRA 2P9ND 3DXMD 1TTWA 2BSIA 2P9LF 3DWLD 4H5BA 4JD2D 4XEIF 3UKRD 4GSLC 4GF3A 4G6TA 1K8KD 2BSJA 1N5BA 2PLGA 3TU3A 1JYOA 2P9KF 1S28A 2LPUA 3ULED 2KC5A 3DXKD 1K6ZA 2FM8A 2P9ID 1U2VF 2P9SF 3RSEF 1K3EA 2P9UF 2P9PD 4JD2F 4JMFB 1TYQD 2P9NF 3DXMF 4AKXA 3DWLF 1XKPB 3UKRF 2BSHA 3UKUD 1K8KF 1L2WA 2XGAA 3ULEF 4XEID 2P9LD 1K3SA 2BHOA 2MQDA 3DXKF 1XKPC 2P9IF 2P9PF 2DYTA 3VX7B
chains in the Genus database with same CATH topology
2P9KD 1TYQF 3EPUA 3KXYA 1U2VD 2P9SD 3CXJA 3UKUF 3RSED 1RY9A 2P9UD 3VX8B 1JYAA 4EBRA 2P9ND 3DXMD 1TTWA 2BSIA 2P9LF 3DWLD 4H5BA 4JD2D 4XEIF 3UKRD 4GSLC 4GF3A 4G6TA 1K8KD 2BSJA 1N5BA 2PLGA 3TU3A 1JYOA 2P9KF 1S28A 2LPUA 3ULED 2KC5A 3DXKD 1K6ZA 2FM8A 2P9ID 1U2VF 2P9SF 3RSEF 1K3EA 2P9UF 2P9PD 4JD2F 4JMFB 1TYQD 2P9NF 3DXMF 4AKXA 3DWLF 1XKPB 3UKRF 2BSHA 3UKUD 1K8KF 1L2WA 2XGAA 3ULEF 4XEID 2P9LD 1K3SA 2BHOA 2MQDA 3DXKF 1XKPC 2P9IF 2P9PF 2DYTA 3VX7B
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2P9K D;  1TYQ F;  1U2V D;  2P9S D;  3UKU F;  3RSE D;  2P9U D;  2P9N D;  3DXM D;  4XEI F;  2P9L F;  3DWL D;  4JD2 D;  3UKR D;  1K8K D;  3ULE D;  2P9K F;  3DXK D;  2P9I D;  1U2V F;  2P9S F;  3RSE F;  2P9U F;  2P9P D;  4JD2 F;  1TYQ D;  2P9N F;  3DXM F;  3DWL F;  3UKR F;  3UKU D;  1K8K F;  3ULE F;  4XEI D;  2P9L D;  3DXK F;  2P9I F;  2P9P F; 
#chains in the Genus database with same CATH topology
 2P9K D;  1TYQ F;  3EPU A;  3KXY A;  1U2V D;  2P9S D;  3CXJ A;  3UKU F;  3RSE D;  1RY9 A;  2P9U D;  3VX8 B;  1JYA A;  2OD0 A;  4EBR A;  2P9N D;  3DXM D;  1TTW A;  2BSI A;  2P9L F;  3DWL D;  4H5B A;  4JD2 D;  4XEI F;  3UKR D;  4GSL C;  4GF3 A;  4G6T A;  1K8K D;  2BSJ A;  1N5B A;  2PLG A;  3TU3 A;  1JYO A;  2P9K F;  1S28 A;  2LPU A;  3ULE D;  2KC5 A;  3DXK D;  1K6Z A;  2FM8 A;  2P9I D;  1U2V F;  2P9S F;  3RSE F;  1K3E A;  2P9U F;  2P9P D;  4JD2 F;  4JMF B;  1TYQ D;  2P9N F;  3DXM F;  4AKX A;  3DWL F;  1XKP B;  3UKR F;  2BSH A;  3UKU D;  1K8K F;  1L2W A;  2XGA A;  3ULE F;  4XEI D;  2P9L D;  1K3S A;  2BHO A;  2MQD A;  3DXK F;  1XKP C;  2P9I F;  2P9P F;  2DYT A;  3VX7 B; 
#chains in the Genus database with same CATH homology
 2P9K D;  1TYQ F;  3EPU A;  3KXY A;  1U2V D;  2P9S D;  3CXJ A;  3UKU F;  3RSE D;  1RY9 A;  2P9U D;  3VX8 B;  1JYA A;  4EBR A;  2P9N D;  3DXM D;  1TTW A;  2BSI A;  2P9L F;  3DWL D;  4H5B A;  4JD2 D;  4XEI F;  3UKR D;  4GSL C;  4GF3 A;  4G6T A;  1K8K D;  2BSJ A;  1N5B A;  2PLG A;  3TU3 A;  1JYO A;  2P9K F;  1S28 A;  2LPU A;  3ULE D;  2KC5 A;  3DXK D;  1K6Z A;  2FM8 A;  2P9I D;  1U2V F;  2P9S F;  3RSE F;  1K3E A;  2P9U F;  2P9P D;  4JD2 F;  4JMF B;  1TYQ D;  2P9N F;  3DXM F;  4AKX A;  3DWL F;  1XKP B;  3UKR F;  2BSH A;  3UKU D;  1K8K F;  1L2W A;  2XGA A;  3ULE F;  4XEI D;  2P9L D;  1K3S A;  2BHO A;  2MQD A;  3DXK F;  1XKP C;  2P9I F;  2P9P F;  2DYT A;  3VX7 B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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